data_7TU3
#
_model_server_result.job_id            6FafwoRCpLM-spWfT5RFRw 
_model_server_result.datetime_utc      '2024-11-19 14:35:57' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7tu3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":501}' 
#
_entry.id    7TU3 
#
_exptl.entry_id    7TU3 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7TU3 
_cell.length_a            181.41 
_cell.length_b            181.41 
_cell.length_c            110.858 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7TU3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    'P 4abw 2nw' 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 8_666 -y+1,-x+1,-z+3/2 0 -1 0 -1 0 0 0 0 -1 181.41 181.41 166.287 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 D N N 
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
? 2 O N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASP 271 A ASP 249 1_555 I MG MG . A MG 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? 
metalc ? metalc2 I MG MG . A MG 506 1_555 R O HOH . A HOH 663 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? 
metalc ? metalc3 I MG MG . A MG 506 1_555 R O HOH . A HOH 665 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.411 ? 
metalc ? metalc4 B OD1 ASP 271 B ASP 249 1_555 N MG MG . B MG 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? 
metalc ? metalc5 N MG MG . B MG 505 1_555 S O HOH . B HOH 634 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.438 ? 
metalc ? metalc6 N MG MG . B MG 505 1_555 S O HOH . B HOH 654 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.154 ? 
metalc ? metalc7 N MG MG . B MG 505 1_555 S O HOH . B HOH 669 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? 
metalc ? metalc8 C OD1 ASP 271 C ASP 249 1_555 Q MG MG . C MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.206 ? 
metalc ? metalc9 Q MG MG . C MG 503 1_555 T O HOH . C HOH 627 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? 
metalc ? metalc10 Q MG MG . C MG 503 1_555 T O HOH . C HOH 641 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.485 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     7TU3 
_atom_sites.fract_transf_matrix[1][1]    0.005512 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005512 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009021 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 EDO A 1 501 501 EDO EDO . 
E 2 EDO A 1 502 502 EDO EDO . 
F 2 EDO A 1 503 503 EDO EDO . 
G 2 EDO A 1 504 504 EDO EDO . 
H 3 SO4 A 1 505 1 SO4 SO4 . 
I 4 MG A 1 506 3 MG MG . 
J 2 EDO B 1 501 501 EDO EDO . 
K 2 EDO B 1 502 502 EDO EDO . 
L 2 EDO B 1 503 503 EDO EDO . 
M 3 SO4 B 1 504 3 SO4 SO4 . 
N 4 MG B 1 505 1 MG MG . 
O 2 EDO C 1 501 501 EDO EDO . 
P 3 SO4 C 1 502 2 SO4 SO4 . 
Q 4 MG C 1 503 2 MG MG . 
R 5 HOH A 1 601 90 HOH HOH . 
R 5 HOH A 2 602 174 HOH HOH . 
R 5 HOH A 3 603 2 HOH HOH . 
R 5 HOH A 4 604 3 HOH HOH . 
R 5 HOH A 5 605 14 HOH HOH . 
R 5 HOH A 6 606 75 HOH HOH . 
R 5 HOH A 7 607 170 HOH HOH . 
R 5 HOH A 8 608 172 HOH HOH . 
R 5 HOH A 9 609 148 HOH HOH . 
R 5 HOH A 10 610 94 HOH HOH . 
R 5 HOH A 11 611 28 HOH HOH . 
R 5 HOH A 12 612 18 HOH HOH . 
R 5 HOH A 13 613 131 HOH HOH . 
R 5 HOH A 14 614 70 HOH HOH . 
R 5 HOH A 15 615 95 HOH HOH . 
R 5 HOH A 16 616 42 HOH HOH . 
R 5 HOH A 17 617 117 HOH HOH . 
R 5 HOH A 18 618 169 HOH HOH . 
R 5 HOH A 19 619 20 HOH HOH . 
R 5 HOH A 20 620 69 HOH HOH . 
R 5 HOH A 21 621 5 HOH HOH . 
R 5 HOH A 22 622 104 HOH HOH . 
R 5 HOH A 23 623 77 HOH HOH . 
R 5 HOH A 24 624 56 HOH HOH . 
R 5 HOH A 25 625 116 HOH HOH . 
R 5 HOH A 26 626 49 HOH HOH . 
R 5 HOH A 27 627 89 HOH HOH . 
R 5 HOH A 28 628 27 HOH HOH . 
R 5 HOH A 29 629 63 HOH HOH . 
R 5 HOH A 30 630 1 HOH HOH . 
R 5 HOH A 31 631 52 HOH HOH . 
R 5 HOH A 32 632 115 HOH HOH . 
R 5 HOH A 33 633 119 HOH HOH . 
R 5 HOH A 34 634 8 HOH HOH . 
R 5 HOH A 35 635 133 HOH HOH . 
R 5 HOH A 36 636 149 HOH HOH . 
R 5 HOH A 37 637 23 HOH HOH . 
R 5 HOH A 38 638 87 HOH HOH . 
R 5 HOH A 39 639 22 HOH HOH . 
R 5 HOH A 40 640 132 HOH HOH . 
R 5 HOH A 41 641 80 HOH HOH . 
R 5 HOH A 42 642 93 HOH HOH . 
R 5 HOH A 43 643 99 HOH HOH . 
R 5 HOH A 44 644 64 HOH HOH . 
R 5 HOH A 45 645 31 HOH HOH . 
R 5 HOH A 46 646 166 HOH HOH . 
R 5 HOH A 47 647 13 HOH HOH . 
R 5 HOH A 48 648 102 HOH HOH . 
R 5 HOH A 49 649 79 HOH HOH . 
R 5 HOH A 50 650 134 HOH HOH . 
R 5 HOH A 51 651 109 HOH HOH . 
R 5 HOH A 52 652 138 HOH HOH . 
R 5 HOH A 53 653 21 HOH HOH . 
R 5 HOH A 54 654 47 HOH HOH . 
R 5 HOH A 55 655 120 HOH HOH . 
R 5 HOH A 56 656 113 HOH HOH . 
R 5 HOH A 57 657 62 HOH HOH . 
R 5 HOH A 58 658 72 HOH HOH . 
R 5 HOH A 59 659 164 HOH HOH . 
R 5 HOH A 60 660 139 HOH HOH . 
R 5 HOH A 61 661 60 HOH HOH . 
R 5 HOH A 62 662 57 HOH HOH . 
R 5 HOH A 63 663 129 HOH HOH . 
R 5 HOH A 64 664 157 HOH HOH . 
R 5 HOH A 65 665 128 HOH HOH . 
R 5 HOH A 66 666 103 HOH HOH . 
R 5 HOH A 67 667 108 HOH HOH . 
S 5 HOH B 1 601 105 HOH HOH . 
S 5 HOH B 2 602 55 HOH HOH . 
S 5 HOH B 3 603 53 HOH HOH . 
S 5 HOH B 4 604 159 HOH HOH . 
S 5 HOH B 5 605 9 HOH HOH . 
S 5 HOH B 6 606 26 HOH HOH . 
S 5 HOH B 7 607 46 HOH HOH . 
S 5 HOH B 8 608 176 HOH HOH . 
S 5 HOH B 9 609 24 HOH HOH . 
S 5 HOH B 10 610 17 HOH HOH . 
S 5 HOH B 11 611 185 HOH HOH . 
S 5 HOH B 12 612 67 HOH HOH . 
S 5 HOH B 13 613 161 HOH HOH . 
S 5 HOH B 14 614 11 HOH HOH . 
S 5 HOH B 15 615 30 HOH HOH . 
S 5 HOH B 16 616 125 HOH HOH . 
S 5 HOH B 17 617 92 HOH HOH . 
S 5 HOH B 18 618 61 HOH HOH . 
S 5 HOH B 19 619 44 HOH HOH . 
S 5 HOH B 20 620 107 HOH HOH . 
S 5 HOH B 21 621 97 HOH HOH . 
S 5 HOH B 22 622 168 HOH HOH . 
S 5 HOH B 23 623 88 HOH HOH . 
S 5 HOH B 24 624 130 HOH HOH . 
S 5 HOH B 25 625 6 HOH HOH . 
S 5 HOH B 26 626 150 HOH HOH . 
S 5 HOH B 27 627 7 HOH HOH . 
S 5 HOH B 28 628 86 HOH HOH . 
S 5 HOH B 29 629 121 HOH HOH . 
S 5 HOH B 30 630 4 HOH HOH . 
S 5 HOH B 31 631 100 HOH HOH . 
S 5 HOH B 32 632 71 HOH HOH . 
S 5 HOH B 33 633 58 HOH HOH . 
S 5 HOH B 34 634 106 HOH HOH . 
S 5 HOH B 35 635 41 HOH HOH . 
S 5 HOH B 36 636 10 HOH HOH . 
S 5 HOH B 37 637 98 HOH HOH . 
S 5 HOH B 38 638 165 HOH HOH . 
S 5 HOH B 39 639 50 HOH HOH . 
S 5 HOH B 40 640 19 HOH HOH . 
S 5 HOH B 41 641 82 HOH HOH . 
S 5 HOH B 42 642 32 HOH HOH . 
S 5 HOH B 43 643 66 HOH HOH . 
S 5 HOH B 44 644 145 HOH HOH . 
S 5 HOH B 45 645 39 HOH HOH . 
S 5 HOH B 46 646 65 HOH HOH . 
S 5 HOH B 47 647 140 HOH HOH . 
S 5 HOH B 48 648 175 HOH HOH . 
S 5 HOH B 49 649 137 HOH HOH . 
S 5 HOH B 50 650 68 HOH HOH . 
S 5 HOH B 51 651 158 HOH HOH . 
S 5 HOH B 52 652 48 HOH HOH . 
S 5 HOH B 53 653 135 HOH HOH . 
S 5 HOH B 54 654 127 HOH HOH . 
S 5 HOH B 55 655 59 HOH HOH . 
S 5 HOH B 56 656 181 HOH HOH . 
S 5 HOH B 57 657 25 HOH HOH . 
S 5 HOH B 58 658 136 HOH HOH . 
S 5 HOH B 59 659 91 HOH HOH . 
S 5 HOH B 60 660 76 HOH HOH . 
S 5 HOH B 61 661 163 HOH HOH . 
S 5 HOH B 62 662 78 HOH HOH . 
S 5 HOH B 63 663 146 HOH HOH . 
S 5 HOH B 64 664 81 HOH HOH . 
S 5 HOH B 65 665 154 HOH HOH . 
S 5 HOH B 66 666 74 HOH HOH . 
S 5 HOH B 67 667 114 HOH HOH . 
S 5 HOH B 68 668 162 HOH HOH . 
S 5 HOH B 69 669 184 HOH HOH . 
T 5 HOH C 1 601 160 HOH HOH . 
T 5 HOH C 2 602 96 HOH HOH . 
T 5 HOH C 3 603 153 HOH HOH . 
T 5 HOH C 4 604 51 HOH HOH . 
T 5 HOH C 5 605 124 HOH HOH . 
T 5 HOH C 6 606 38 HOH HOH . 
T 5 HOH C 7 607 37 HOH HOH . 
T 5 HOH C 8 608 12 HOH HOH . 
T 5 HOH C 9 609 16 HOH HOH . 
T 5 HOH C 10 610 143 HOH HOH . 
T 5 HOH C 11 611 85 HOH HOH . 
T 5 HOH C 12 612 167 HOH HOH . 
T 5 HOH C 13 613 36 HOH HOH . 
T 5 HOH C 14 614 171 HOH HOH . 
T 5 HOH C 15 615 118 HOH HOH . 
T 5 HOH C 16 616 54 HOH HOH . 
T 5 HOH C 17 617 179 HOH HOH . 
T 5 HOH C 18 618 40 HOH HOH . 
T 5 HOH C 19 619 35 HOH HOH . 
T 5 HOH C 20 620 147 HOH HOH . 
T 5 HOH C 21 621 142 HOH HOH . 
T 5 HOH C 22 622 110 HOH HOH . 
T 5 HOH C 23 623 15 HOH HOH . 
T 5 HOH C 24 624 73 HOH HOH . 
T 5 HOH C 25 625 84 HOH HOH . 
T 5 HOH C 26 626 45 HOH HOH . 
T 5 HOH C 27 627 183 HOH HOH . 
T 5 HOH C 28 628 111 HOH HOH . 
T 5 HOH C 29 629 141 HOH HOH . 
T 5 HOH C 30 630 43 HOH HOH . 
T 5 HOH C 31 631 156 HOH HOH . 
T 5 HOH C 32 632 34 HOH HOH . 
T 5 HOH C 33 633 180 HOH HOH . 
T 5 HOH C 34 634 173 HOH HOH . 
T 5 HOH C 35 635 151 HOH HOH . 
T 5 HOH C 36 636 83 HOH HOH . 
T 5 HOH C 37 637 29 HOH HOH . 
T 5 HOH C 38 638 33 HOH HOH . 
T 5 HOH C 39 639 101 HOH HOH . 
T 5 HOH C 40 640 123 HOH HOH . 
T 5 HOH C 41 641 182 HOH HOH . 
T 5 HOH C 42 642 122 HOH HOH . 
T 5 HOH C 43 643 144 HOH HOH . 
T 5 HOH C 44 644 155 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . J 2 97.363 35.337 72.579 1 76.61 ? C1 EDO 501 B 1 
HETATM 2 O O1 EDO . . . J 2 97.795 36.386 73.416 1 80.2 ? O1 EDO 501 B 1 
HETATM 3 C C2 EDO . . . J 2 95.921 35.064 72.735 1 72.61 ? C2 EDO 501 B 1 
HETATM 4 O O2 EDO . . . J 2 95.468 35.393 74.023 1 70.47 ? O2 EDO 501 B 1 
#
_model_server_stats.io_time_ms              27 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           325 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           4 
#