data_7TU9
#
_model_server_result.job_id            CGmx_eFEQ5lk9FPHMqkhMg 
_model_server_result.datetime_utc      '2024-11-21 18:37:26' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7tu9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"X","auth_seq_id":502}' 
#
_entry.id    7TU9 
#
_exptl.entry_id    7TU9 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              334.412 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            STRYCHNINE 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7TU9 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7TU9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 I N N 
? 6 L N N 
? 6 T N N 
? 6 W N N 
? 6 X N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 E SG CYS 263 E CYS 182 1_555 E SG CYS 277 E CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
covale ? covale1 A ND2 ASN 62 A ASN 62 1_555 F C1 NAG . A NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? 
covale ? covale2 B ND2 ASN 62 D ASN 62 1_555 K C1 NAG . D NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.463 ? 
covale ? covale3 C ND2 ASN 62 C ASN 62 1_555 S C1 NAG . C NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? 
covale ? covale4 D ND2 ASN 62 B ASN 62 1_555 Z C1 NAG . B NAG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? 
covale ? covale5 E ND2 ASN 135 E ASN 54 1_555 FA C1 NAG . E NAG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? 
covale ? covale6 E ND2 ASN 322 E ASN 241 1_555 GA C1 NAG . E NAG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? 
#
_chem_comp.formula           'C21 H22 N2 O2' 
_chem_comp.formula_weight    334.412 
_chem_comp.id                SY9 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              STRYCHNINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAV CAU SY9 sing 532 n n 
CAV CAG SY9 sing 533 n n 
CAV NAY SY9 sing 534 n n 
CAU CAT SY9 sing 535 n n 
CAT CAN SY9 sing 536 n n 
CAT CAR SY9 sing 537 n n 
CAN CAK SY9 sing 538 n n 
CAN CAM SY9 sing 539 n n 
CAK NAH SY9 sing 540 n n 
CAK CAG SY9 sing 541 n n 
NAH CAA SY9 sing 542 n n 
NAH CAI SY9 sing 543 n n 
CAA CAF SY9 sing 544 n y 
CAA CAB SY9 doub 545 n y 
CAF CAE SY9 doub 546 n y 
CAE CAD SY9 sing 547 n y 
CAD CAC SY9 doub 548 n y 
CAC CAB SY9 sing 549 n y 
CAB CAG SY9 sing 550 n n 
CAG CAW SY9 sing 551 n n 
CAW CAX SY9 sing 552 n n 
CAX NAY SY9 sing 553 n n 
NAY CAS SY9 sing 554 n n 
CAS CAR SY9 sing 555 n n 
CAR CAQ SY9 doub 556 n n 
CAQ CAP SY9 sing 557 n n 
CAP OAO SY9 sing 558 n n 
OAO CAM SY9 sing 559 n n 
CAM CAL SY9 sing 560 n n 
CAL CAI SY9 sing 561 n n 
CAI OAJ SY9 doub 562 n n 
CAV HAV SY9 sing 563 n n 
CAU HAU1 SY9 sing 564 n n 
CAU HAU2 SY9 sing 565 n n 
CAT HAT SY9 sing 566 n n 
CAN HAN SY9 sing 567 n n 
CAK HAK SY9 sing 568 n n 
CAM HAM SY9 sing 569 n n 
CAF HAF SY9 sing 570 n n 
CAE HAE SY9 sing 571 n n 
CAD HAD SY9 sing 572 n n 
CAC HAC SY9 sing 573 n n 
CAW HAW1 SY9 sing 574 n n 
CAW HAW2 SY9 sing 575 n n 
CAX HAX1 SY9 sing 576 n n 
CAX HAX2 SY9 sing 577 n n 
CAS HAS1 SY9 sing 578 n n 
CAS HAS2 SY9 sing 579 n n 
CAQ HAQ SY9 sing 580 n n 
CAP HAP1 SY9 sing 581 n n 
CAP HAP2 SY9 sing 582 n n 
CAL HAL1 SY9 sing 583 n n 
CAL HAL2 SY9 sing 584 n n 
#
_atom_sites.entry_id                     7TU9 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 3 NAG A 1 501 502 NAG NAG . 
G 4 PIO A 1 502 504 PIO PIO . 
H 5 PX4 A 1 503 505 PX4 PX4 . 
I 6 SY9 A 1 504 506 SY9 SY9 . 
J 4 PIO A 1 505 9 PIO PIO . 
K 3 NAG D 1 501 502 NAG NAG . 
L 6 SY9 D 1 502 503 SY9 SY9 . 
M 5 PX4 D 1 503 504 PX4 PX4 . 
N 5 PX4 D 1 504 509 PX4 PX4 . 
O 4 PIO D 1 505 3 PIO PIO . 
P 4 PIO D 1 506 5 PIO PIO . 
Q 4 PIO D 1 507 8 PIO PIO . 
R 5 PX4 C 1 501 505 PX4 PX4 . 
S 3 NAG C 1 502 502 NAG NAG . 
T 6 SY9 C 1 503 503 SY9 SY9 . 
U 5 PX4 C 1 504 507 PX4 PX4 . 
V 4 PIO C 1 505 4 PIO PIO . 
W 6 SY9 B 1 501 503 SY9 SY9 . 
X 6 SY9 B 1 502 504 SY9 SY9 . 
Y 5 PX4 B 1 503 506 PX4 PX4 . 
Z 3 NAG B 1 504 502 NAG NAG . 
AA 4 PIO B 1 505 503 PIO PIO . 
BA 5 PX4 B 1 506 504 PX4 PX4 . 
CA 5 PX4 B 1 507 505 PX4 PX4 . 
DA 5 PX4 E 1 601 506 PX4 PX4 . 
EA 5 PX4 E 1 602 507 PX4 PX4 . 
FA 3 NAG E 1 603 507 NAG NAG . 
GA 3 NAG E 1 604 510 NAG NAG . 
HA 4 PIO E 1 605 2 PIO PIO . 
IA 4 PIO E 1 606 6 PIO PIO . 
JA 4 PIO E 1 607 7 PIO PIO . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAV SY9 . . . X 6 99.984 124.402 162.559 1 102.93 ? CAV SY9 502 B 1 
HETATM 2 C CAU SY9 . . . X 6 98.75 124.099 161.71 1 102.93 ? CAU SY9 502 B 1 
HETATM 3 C CAT SY9 . . . X 6 99.171 123.084 160.618 1 102.93 ? CAT SY9 502 B 1 
HETATM 4 C CAN SY9 . . . X 6 99.335 121.742 161.385 1 102.93 ? CAN SY9 502 B 1 
HETATM 5 C CAK SY9 . . . X 6 100.363 121.826 162.523 1 102.93 ? CAK SY9 502 B 1 
HETATM 6 N NAH SY9 . . . X 6 99.823 120.841 163.495 1 102.93 ? NAH SY9 502 B 1 
HETATM 7 C CAA SY9 . . . X 6 99.615 121.468 164.751 1 102.93 ? CAA SY9 502 B 1 
HETATM 8 C CAF SY9 . . . X 6 99.076 120.94 165.935 1 102.93 ? CAF SY9 502 B 1 
HETATM 9 C CAE SY9 . . . X 6 98.956 121.787 167.041 1 102.93 ? CAE SY9 502 B 1 
HETATM 10 C CAD SY9 . . . X 6 99.347 123.123 166.976 1 102.93 ? CAD SY9 502 B 1 
HETATM 11 C CAC SY9 . . . X 6 99.87 123.637 165.787 1 102.93 ? CAC SY9 502 B 1 
HETATM 12 C CAB SY9 . . . X 6 99.989 122.81 164.674 1 102.93 ? CAB SY9 502 B 1 
HETATM 13 C CAG SY9 . . . X 6 100.538 123.163 163.312 1 102.93 ? CAG SY9 502 B 1 
HETATM 14 C CAW SY9 . . . X 6 102.018 123.553 163.475 1 102.93 ? CAW SY9 502 B 1 
HETATM 15 C CAX SY9 . . . X 6 102.379 124.283 162.191 1 102.93 ? CAX SY9 502 B 1 
HETATM 16 N NAY SY9 . . . X 6 101.133 124.943 161.738 1 102.93 ? NAY SY9 502 B 1 
HETATM 17 C CAS SY9 . . . X 6 100.985 124.867 160.262 1 102.93 ? CAS SY9 502 B 1 
HETATM 18 C CAR SY9 . . . X 6 100.442 123.512 159.877 1 102.93 ? CAR SY9 502 B 1 
HETATM 19 C CAQ SY9 . . . X 6 101.036 122.741 158.97 1 102.93 ? CAQ SY9 502 B 1 
HETATM 20 C CAP SY9 . . . X 6 100.514 121.386 158.59 1 102.93 ? CAP SY9 502 B 1 
HETATM 21 O OAO SY9 . . . X 6 100.664 120.461 159.684 1 102.93 ? OAO SY9 502 B 1 
HETATM 22 C CAM SY9 . . . X 6 99.586 120.421 160.629 1 102.93 ? CAM SY9 502 B 1 
HETATM 23 C CAL SY9 . . . X 6 99.89 119.258 161.624 1 102.93 ? CAL SY9 502 B 1 
HETATM 24 C CAI SY9 . . . X 6 99.574 119.552 163.082 1 102.93 ? CAI SY9 502 B 1 
HETATM 25 O OAJ SY9 . . . X 6 99.114 118.677 163.813 1 102.93 ? OAJ SY9 502 B 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    29 
_model_server_stats.query_time_ms           280 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           25 
#