data_7TU9 # _model_server_result.job_id gMYJxIZWR8y43gbcraAEZg _model_server_result.datetime_utc '2024-10-19 20:03:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7tu9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"T","auth_seq_id":503}' # _entry.id 7TU9 # _exptl.entry_id 7TU9 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 334.412 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description STRYCHNINE _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7TU9 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7TU9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 I N N ? 6 L N N ? 6 T N N ? 6 W N N ? 6 X N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 E SG CYS 263 E CYS 182 1_555 E SG CYS 277 E CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? covale ? covale1 A ND2 ASN 62 A ASN 62 1_555 F C1 NAG . A NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale2 B ND2 ASN 62 D ASN 62 1_555 K C1 NAG . D NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.463 ? covale ? covale3 C ND2 ASN 62 C ASN 62 1_555 S C1 NAG . C NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale4 D ND2 ASN 62 B ASN 62 1_555 Z C1 NAG . B NAG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale5 E ND2 ASN 135 E ASN 54 1_555 FA C1 NAG . E NAG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale6 E ND2 ASN 322 E ASN 241 1_555 GA C1 NAG . E NAG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? # _chem_comp.formula 'C21 H22 N2 O2' _chem_comp.formula_weight 334.412 _chem_comp.id SY9 _chem_comp.mon_nstd_flag . _chem_comp.name STRYCHNINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7TU9 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 3 NAG A 1 501 502 NAG NAG . G 4 PIO A 1 502 504 PIO PIO . H 5 PX4 A 1 503 505 PX4 PX4 . I 6 SY9 A 1 504 506 SY9 SY9 . J 4 PIO A 1 505 9 PIO PIO . K 3 NAG D 1 501 502 NAG NAG . L 6 SY9 D 1 502 503 SY9 SY9 . M 5 PX4 D 1 503 504 PX4 PX4 . N 5 PX4 D 1 504 509 PX4 PX4 . O 4 PIO D 1 505 3 PIO PIO . P 4 PIO D 1 506 5 PIO PIO . Q 4 PIO D 1 507 8 PIO PIO . R 5 PX4 C 1 501 505 PX4 PX4 . S 3 NAG C 1 502 502 NAG NAG . T 6 SY9 C 1 503 503 SY9 SY9 . U 5 PX4 C 1 504 507 PX4 PX4 . V 4 PIO C 1 505 4 PIO PIO . W 6 SY9 B 1 501 503 SY9 SY9 . X 6 SY9 B 1 502 504 SY9 SY9 . Y 5 PX4 B 1 503 506 PX4 PX4 . Z 3 NAG B 1 504 502 NAG NAG . AA 4 PIO B 1 505 503 PIO PIO . BA 5 PX4 B 1 506 504 PX4 PX4 . CA 5 PX4 B 1 507 505 PX4 PX4 . DA 5 PX4 E 1 601 506 PX4 PX4 . EA 5 PX4 E 1 602 507 PX4 PX4 . FA 3 NAG E 1 603 507 NAG NAG . GA 3 NAG E 1 604 510 NAG NAG . HA 4 PIO E 1 605 2 PIO PIO . IA 4 PIO E 1 606 6 PIO PIO . JA 4 PIO E 1 607 7 PIO PIO . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAV SY9 . . . T 6 115.053 152.973 162.979 1 103.88 ? CAV SY9 503 C 1 HETATM 2 C CAU SY9 . . . T 6 114.428 154.081 162.134 1 103.88 ? CAU SY9 503 C 1 HETATM 3 C CAT SY9 . . . T 6 113.589 153.406 161.023 1 103.88 ? CAT SY9 503 C 1 HETATM 4 C CAN SY9 . . . T 6 112.335 152.869 161.768 1 103.88 ? CAN SY9 503 C 1 HETATM 5 C CAK SY9 . . . T 6 112.685 151.89 162.897 1 103.88 ? CAK SY9 503 C 1 HETATM 6 N NAH SY9 . . . T 6 111.578 152.124 163.86 1 103.88 ? NAH SY9 503 C 1 HETATM 7 C CAA SY9 . . . T 6 112.109 152.477 165.128 1 103.88 ? CAA SY9 503 C 1 HETATM 8 C CAF SY9 . . . T 6 111.44 152.833 166.31 1 103.88 ? CAF SY9 503 C 1 HETATM 9 C CAE SY9 . . . T 6 112.209 153.165 167.429 1 103.88 ? CAE SY9 503 C 1 HETATM 10 C CAD SY9 . . . T 6 113.601 153.159 167.379 1 103.88 ? CAD SY9 503 C 1 HETATM 11 C CAC SY9 . . . T 6 114.253 152.816 166.193 1 103.88 ? CAC SY9 503 C 1 HETATM 12 C CAB SY9 . . . T 6 113.503 152.49 165.066 1 103.88 ? CAB SY9 503 C 1 HETATM 13 C CAG SY9 . . . T 6 114.01 152.081 163.704 1 103.88 ? CAG SY9 503 C 1 HETATM 14 C CAW SY9 . . . T 6 114.794 150.766 163.859 1 103.88 ? CAW SY9 503 C 1 HETATM 15 C CAX SY9 . . . T 6 115.639 150.649 162.6 1 103.88 ? CAX SY9 503 C 1 HETATM 16 N NAY SY9 . . . T 6 115.912 152.037 162.161 1 103.88 ? NAY SY9 503 C 1 HETATM 17 C CAS SY9 . . . T 6 115.814 152.168 160.685 1 103.88 ? CAS SY9 503 C 1 HETATM 18 C CAR SY9 . . . T 6 114.366 152.313 160.283 1 103.88 ? CAR SY9 503 C 1 HETATM 19 C CAQ SY9 . . . T 6 113.804 151.537 159.361 1 103.88 ? CAQ SY9 503 C 1 HETATM 20 C CAP SY9 . . . T 6 112.361 151.667 158.965 1 103.88 ? CAP SY9 503 C 1 HETATM 21 O OAO SY9 . . . T 6 111.497 151.257 160.043 1 103.88 ? OAO SY9 503 C 1 HETATM 22 C CAM SY9 . . . T 6 111.144 152.275 160.989 1 103.88 ? CAM SY9 503 C 1 HETATM 23 C CAL SY9 . . . T 6 110.095 151.656 161.963 1 103.88 ? CAL SY9 503 C 1 HETATM 24 C CAI SY9 . . . T 6 110.274 152.018 163.429 1 103.88 ? CAI SY9 503 C 1 HETATM 25 O OAJ SY9 . . . T 6 109.298 152.209 164.151 1 103.88 ? OAJ SY9 503 C 1 # _model_server_stats.io_time_ms 46 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 256 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 25 #