data_7TU9
#
_model_server_result.job_id            Z3pJT-7MoWduevNMBH_l6A 
_model_server_result.datetime_utc      '2024-11-21 18:26:32' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7tu9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"DA","auth_seq_id":601}' 
#
_entry.id    7TU9 
#
_exptl.entry_id    7TU9 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              678.94 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHOCHOLINE 
_entity.pdbx_number_of_molecules    10 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7TU9 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7TU9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 H N N 
? 5 M N N 
? 5 N N N 
? 5 R N N 
? 5 U N N 
? 5 Y N N 
? 5 BA N N 
? 5 CA N N 
? 5 DA N N 
? 5 EA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 E SG CYS 263 E CYS 182 1_555 E SG CYS 277 E CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
covale ? covale1 A ND2 ASN 62 A ASN 62 1_555 F C1 NAG . A NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? 
covale ? covale2 B ND2 ASN 62 D ASN 62 1_555 K C1 NAG . D NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.463 ? 
covale ? covale3 C ND2 ASN 62 C ASN 62 1_555 S C1 NAG . C NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? 
covale ? covale4 D ND2 ASN 62 B ASN 62 1_555 Z C1 NAG . B NAG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? 
covale ? covale5 E ND2 ASN 135 E ASN 54 1_555 FA C1 NAG . E NAG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? 
covale ? covale6 E ND2 ASN 322 E ASN 241 1_555 GA C1 NAG . E NAG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? 
#
_chem_comp.formula           'C36 H73 N O8 P 1' 
_chem_comp.formula_weight    678.94 
_chem_comp.id                PX4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHOCHOLINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1 P1 PX4 sing 401 n n 
O1 H1P PX4 sing 402 n n 
O2 P1 PX4 doub 403 n n 
P1 O3 PX4 sing 404 n n 
P1 O4 PX4 sing 405 n n 
O3 C1 PX4 sing 406 n n 
C1 C2 PX4 sing 407 n n 
C1 H1 PX4 sing 408 n n 
C1 H2 PX4 sing 409 n n 
C2 N1 PX4 sing 410 n n 
C2 H3 PX4 sing 411 n n 
C2 H4 PX4 sing 412 n n 
N1 C3 PX4 sing 413 n n 
N1 C4 PX4 sing 414 n n 
N1 C5 PX4 sing 415 n n 
C3 H5 PX4 sing 416 n n 
C3 H6 PX4 sing 417 n n 
C3 H7 PX4 sing 418 n n 
C4 H8 PX4 sing 419 n n 
C4 H9 PX4 sing 420 n n 
C4 H10 PX4 sing 421 n n 
C5 H11 PX4 sing 422 n n 
C5 H12 PX4 sing 423 n n 
C5 H13 PX4 sing 424 n n 
O4 C6 PX4 sing 425 n n 
C6 C7 PX4 sing 426 n n 
C6 H14 PX4 sing 427 n n 
C6 H15 PX4 sing 428 n n 
C7 C8 PX4 sing 429 n n 
C7 O7 PX4 sing 430 n n 
C7 H16 PX4 sing 431 n n 
C8 O5 PX4 sing 432 n n 
C8 H17 PX4 sing 433 n n 
C8 H18 PX4 sing 434 n n 
O5 C9 PX4 sing 435 n n 
C9 O6 PX4 doub 436 n n 
C9 C10 PX4 sing 437 n n 
C10 C11 PX4 sing 438 n n 
C10 H19 PX4 sing 439 n n 
C10 H20 PX4 sing 440 n n 
C11 C12 PX4 sing 441 n n 
C11 H21 PX4 sing 442 n n 
C11 H22 PX4 sing 443 n n 
C12 C13 PX4 sing 444 n n 
C12 H23 PX4 sing 445 n n 
C12 H24 PX4 sing 446 n n 
C13 C14 PX4 sing 447 n n 
C13 H25 PX4 sing 448 n n 
C13 H26 PX4 sing 449 n n 
C14 C15 PX4 sing 450 n n 
C14 H27 PX4 sing 451 n n 
C14 H28 PX4 sing 452 n n 
C15 C16 PX4 sing 453 n n 
C15 H29 PX4 sing 454 n n 
C15 H30 PX4 sing 455 n n 
C16 C17 PX4 sing 456 n n 
C16 H31 PX4 sing 457 n n 
C16 H32 PX4 sing 458 n n 
C17 C18 PX4 sing 459 n n 
C17 H33 PX4 sing 460 n n 
C17 H34 PX4 sing 461 n n 
C18 C19 PX4 sing 462 n n 
C18 H35 PX4 sing 463 n n 
C18 H36 PX4 sing 464 n n 
C19 C20 PX4 sing 465 n n 
C19 H37 PX4 sing 466 n n 
C19 H38 PX4 sing 467 n n 
C20 C21 PX4 sing 468 n n 
C20 H39 PX4 sing 469 n n 
C20 H40 PX4 sing 470 n n 
C21 C22 PX4 sing 471 n n 
C21 H41 PX4 sing 472 n n 
C21 H42 PX4 sing 473 n n 
C22 H43 PX4 sing 474 n n 
C22 H44 PX4 sing 475 n n 
C22 H45 PX4 sing 476 n n 
O7 C23 PX4 sing 477 n n 
C23 O8 PX4 doub 478 n n 
C23 C24 PX4 sing 479 n n 
C24 C25 PX4 sing 480 n n 
C24 H46 PX4 sing 481 n n 
C24 H47 PX4 sing 482 n n 
C25 C26 PX4 sing 483 n n 
C25 H48 PX4 sing 484 n n 
C25 H49 PX4 sing 485 n n 
C26 C27 PX4 sing 486 n n 
C26 H50 PX4 sing 487 n n 
C26 H51 PX4 sing 488 n n 
C27 C28 PX4 sing 489 n n 
C27 H52 PX4 sing 490 n n 
C27 H53 PX4 sing 491 n n 
C28 C29 PX4 sing 492 n n 
C28 H54 PX4 sing 493 n n 
C28 H55 PX4 sing 494 n n 
C29 C30 PX4 sing 495 n n 
C29 H56 PX4 sing 496 n n 
C29 H57 PX4 sing 497 n n 
C30 C31 PX4 sing 498 n n 
C30 H58 PX4 sing 499 n n 
C30 H59 PX4 sing 500 n n 
C31 C32 PX4 sing 501 n n 
C31 H60 PX4 sing 502 n n 
C31 H61 PX4 sing 503 n n 
C32 C33 PX4 sing 504 n n 
C32 H62 PX4 sing 505 n n 
C32 H63 PX4 sing 506 n n 
C33 C34 PX4 sing 507 n n 
C33 H64 PX4 sing 508 n n 
C33 H65 PX4 sing 509 n n 
C34 C35 PX4 sing 510 n n 
C34 H66 PX4 sing 511 n n 
C34 H67 PX4 sing 512 n n 
C35 C36 PX4 sing 513 n n 
C35 H68 PX4 sing 514 n n 
C35 H69 PX4 sing 515 n n 
C36 H70 PX4 sing 516 n n 
C36 H71 PX4 sing 517 n n 
C36 H72 PX4 sing 518 n n 
#
_atom_sites.entry_id                     7TU9 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 3 NAG A 1 501 502 NAG NAG . 
G 4 PIO A 1 502 504 PIO PIO . 
H 5 PX4 A 1 503 505 PX4 PX4 . 
I 6 SY9 A 1 504 506 SY9 SY9 . 
J 4 PIO A 1 505 9 PIO PIO . 
K 3 NAG D 1 501 502 NAG NAG . 
L 6 SY9 D 1 502 503 SY9 SY9 . 
M 5 PX4 D 1 503 504 PX4 PX4 . 
N 5 PX4 D 1 504 509 PX4 PX4 . 
O 4 PIO D 1 505 3 PIO PIO . 
P 4 PIO D 1 506 5 PIO PIO . 
Q 4 PIO D 1 507 8 PIO PIO . 
R 5 PX4 C 1 501 505 PX4 PX4 . 
S 3 NAG C 1 502 502 NAG NAG . 
T 6 SY9 C 1 503 503 SY9 SY9 . 
U 5 PX4 C 1 504 507 PX4 PX4 . 
V 4 PIO C 1 505 4 PIO PIO . 
W 6 SY9 B 1 501 503 SY9 SY9 . 
X 6 SY9 B 1 502 504 SY9 SY9 . 
Y 5 PX4 B 1 503 506 PX4 PX4 . 
Z 3 NAG B 1 504 502 NAG NAG . 
AA 4 PIO B 1 505 503 PIO PIO . 
BA 5 PX4 B 1 506 504 PX4 PX4 . 
CA 5 PX4 B 1 507 505 PX4 PX4 . 
DA 5 PX4 E 1 601 506 PX4 PX4 . 
EA 5 PX4 E 1 602 507 PX4 PX4 . 
FA 3 NAG E 1 603 507 NAG NAG . 
GA 3 NAG E 1 604 510 NAG NAG . 
HA 4 PIO E 1 605 2 PIO PIO . 
IA 4 PIO E 1 606 6 PIO PIO . 
JA 4 PIO E 1 607 7 PIO PIO . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O7 PX4 . . . DA 5 155.099 122.702 91.486 1 132.84 ? O7 PX4 601 E 1 
HETATM 2 C C23 PX4 . . . DA 5 154.382 122.002 90.412 1 132.84 ? C23 PX4 601 E 1 
HETATM 3 O O8 PX4 . . . DA 5 155.003 121.257 89.634 1 132.84 ? O8 PX4 601 E 1 
HETATM 4 C C24 PX4 . . . DA 5 152.798 122.197 90.242 1 132.84 ? C24 PX4 601 E 1 
HETATM 5 C C25 PX4 . . . DA 5 152.505 123.153 88.986 1 132.84 ? C25 PX4 601 E 1 
HETATM 6 C C26 PX4 . . . DA 5 151.027 123.76 89.112 1 132.84 ? C26 PX4 601 E 1 
HETATM 7 C C27 PX4 . . . DA 5 150.929 124.654 90.438 1 132.84 ? C27 PX4 601 E 1 
HETATM 8 C C28 PX4 . . . DA 5 149.447 124.56 91.033 1 132.84 ? C28 PX4 601 E 1 
HETATM 9 C C29 PX4 . . . DA 5 149.227 125.722 92.116 1 132.84 ? C29 PX4 601 E 1 
HETATM 10 C C30 PX4 . . . DA 5 147.766 125.579 92.757 1 132.84 ? C30 PX4 601 E 1 
HETATM 11 C C31 PX4 . . . DA 5 147.395 126.919 93.552 1 132.84 ? C31 PX4 601 E 1 
HETATM 12 C C32 PX4 . . . DA 5 148.041 126.879 95.02 1 132.84 ? C32 PX4 601 E 1 
HETATM 13 C C33 PX4 . . . DA 5 147.137 127.749 96.023 1 132.84 ? C33 PX4 601 E 1 
HETATM 14 C C34 PX4 . . . DA 5 147.87 127.857 97.448 1 132.84 ? C34 PX4 601 E 1 
HETATM 15 C C35 PX4 . . . DA 5 147.915 129.391 97.91 1 132.84 ? C35 PX4 601 E 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    29 
_model_server_stats.query_time_ms           245 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           15 
#