data_7TVS # _model_server_result.job_id CdOkBdQxEqTkOh_ovas3Tw _model_server_result.datetime_utc '2024-11-08 18:12:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7tvs # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 7TVS # _exptl.entry_id 7TVS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 484.616 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-(4-methyl-3-{[4-(pyridin-3-yl)-1,3-thiazol-2-yl]amino}phenyl)-4-[(piperazin-1-yl)methyl]benzamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 114.329 _cell.angle_gamma 90 _cell.entry_id 7TVS _cell.length_a 97.08 _cell.length_b 80.888 _cell.length_c 51.912 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7TVS _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C27 H28 N6 O S' _chem_comp.formula_weight 484.616 _chem_comp.id XNJ _chem_comp.mon_nstd_flag . _chem_comp.name N-(4-methyl-3-{[4-(pyridin-3-yl)-1,3-thiazol-2-yl]amino}phenyl)-4-[(piperazin-1-yl)methyl]benzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'demethylated masitinib' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAC CAB XNJ doub 385 n y CAC NAD XNJ sing 386 n y CAB CAA XNJ sing 387 n y NAD CAE XNJ doub 388 n y CAA CAF XNJ doub 389 n y CAE CAF XNJ sing 390 n y CAF CAG XNJ sing 391 n n CAG CAH XNJ doub 392 n y CAG NAK XNJ sing 393 n y CAH SAI XNJ sing 394 n y NAK CAJ XNJ doub 395 n y CAJ SAI XNJ sing 396 n y CAJ NAL XNJ sing 397 n n NBG CBH XNJ sing 398 n n NBG CBF XNJ sing 399 n n NAL CAM XNJ sing 400 n n CBH CBI XNJ sing 401 n n CBF CBE XNJ sing 402 n n CAM CAN XNJ doub 403 n y CAM CAR XNJ sing 404 n y CBI NBD XNJ sing 405 n n CAN CAO XNJ sing 406 n y CBE NBD XNJ sing 407 n n CAS CAR XNJ sing 408 n n NBD CBC XNJ sing 409 n n CAR CAQ XNJ doub 410 n y CAO NAT XNJ sing 411 n n CAO CAP XNJ doub 412 n y NAT CAU XNJ sing 413 n n CBB CBA XNJ doub 414 n y CBB CAV XNJ sing 415 n y CBA CAZ XNJ sing 416 n y CAU CAV XNJ sing 417 n n CAU OAW XNJ doub 418 n n CAV CAX XNJ doub 419 n y CAZ CBC XNJ sing 420 n n CAZ CAY XNJ doub 421 n y CAQ CAP XNJ sing 422 n y CAX CAY XNJ sing 423 n y CBE H1 XNJ sing 424 n n CBE H2 XNJ sing 425 n n CBF H3 XNJ sing 426 n n CBF H4 XNJ sing 427 n n NBG H5 XNJ sing 428 n n CBH H7 XNJ sing 429 n n CBH H8 XNJ sing 430 n n CBI H9 XNJ sing 431 n n CBI H10 XNJ sing 432 n n CBC H12 XNJ sing 433 n n CBC H13 XNJ sing 434 n n CBA H14 XNJ sing 435 n n CBB H15 XNJ sing 436 n n CAY H16 XNJ sing 437 n n CAX H17 XNJ sing 438 n n NAT H18 XNJ sing 439 n n CAN H19 XNJ sing 440 n n CAP H20 XNJ sing 441 n n CAQ H21 XNJ sing 442 n n CAS H22 XNJ sing 443 n n CAS H23 XNJ sing 444 n n CAS H24 XNJ sing 445 n n NAL H25 XNJ sing 446 n n CAH H26 XNJ sing 447 n n CAA H27 XNJ sing 448 n n CAB H28 XNJ sing 449 n n CAC H29 XNJ sing 450 n n CAE H30 XNJ sing 451 n n # _atom_sites.entry_id 7TVS _atom_sites.fract_transf_matrix[1][1] 0.010301 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004657 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012363 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021141 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 XNJ A 1 401 401 XNJ XNJ . C 3 DMS A 1 402 404 DMS DMS . D 3 DMS A 1 403 405 DMS DMS . E 4 HOH A 1 501 42 HOH HOH . E 4 HOH A 2 502 39 HOH HOH . E 4 HOH A 3 503 25 HOH HOH . E 4 HOH A 4 504 21 HOH HOH . E 4 HOH A 5 505 24 HOH HOH . E 4 HOH A 6 506 20 HOH HOH . E 4 HOH A 7 507 38 HOH HOH . E 4 HOH A 8 508 46 HOH HOH . E 4 HOH A 9 509 40 HOH HOH . E 4 HOH A 10 510 28 HOH HOH . E 4 HOH A 11 511 32 HOH HOH . E 4 HOH A 12 512 8 HOH HOH . E 4 HOH A 13 513 1 HOH HOH . E 4 HOH A 14 514 12 HOH HOH . E 4 HOH A 15 515 26 HOH HOH . E 4 HOH A 16 516 11 HOH HOH . E 4 HOH A 17 517 43 HOH HOH . E 4 HOH A 18 518 9 HOH HOH . E 4 HOH A 19 519 15 HOH HOH . E 4 HOH A 20 520 6 HOH HOH . E 4 HOH A 21 521 14 HOH HOH . E 4 HOH A 22 522 44 HOH HOH . E 4 HOH A 23 523 16 HOH HOH . E 4 HOH A 24 524 33 HOH HOH . E 4 HOH A 25 525 19 HOH HOH . E 4 HOH A 26 526 35 HOH HOH . E 4 HOH A 27 527 34 HOH HOH . E 4 HOH A 28 528 22 HOH HOH . E 4 HOH A 29 529 18 HOH HOH . E 4 HOH A 30 530 5 HOH HOH . E 4 HOH A 31 531 4 HOH HOH . E 4 HOH A 32 532 23 HOH HOH . E 4 HOH A 33 533 10 HOH HOH . E 4 HOH A 34 534 27 HOH HOH . E 4 HOH A 35 535 45 HOH HOH . E 4 HOH A 36 536 3 HOH HOH . E 4 HOH A 37 537 36 HOH HOH . E 4 HOH A 38 538 17 HOH HOH . E 4 HOH A 39 539 37 HOH HOH . E 4 HOH A 40 540 30 HOH HOH . E 4 HOH A 41 541 13 HOH HOH . E 4 HOH A 42 542 7 HOH HOH . E 4 HOH A 43 543 29 HOH HOH . E 4 HOH A 44 544 2 HOH HOH . E 4 HOH A 45 545 31 HOH HOH . E 4 HOH A 46 546 41 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CBE XNJ . . . B 2 19.668 5.802 24.73 1 118.52 ? CBE XNJ 401 A 1 HETATM 2 C CBF XNJ . . . B 2 20.55 6.036 23.497 1 117.01 ? CBF XNJ 401 A 1 HETATM 3 N NBG XNJ . . . B 2 19.733 6.428 22.388 1 116.11 ? NBG XNJ 401 A 1 HETATM 4 C CBH XNJ . . . B 2 18.95 7.568 22.768 1 117.1 ? CBH XNJ 401 A 1 HETATM 5 C CBI XNJ . . . B 2 18.153 7.229 24.035 1 118.05 ? CBI XNJ 401 A 1 HETATM 6 N NBD XNJ . . . B 2 18.948 6.868 25.025 1 117.87 ? NBD XNJ 401 A 1 HETATM 7 C CBC XNJ . . . B 2 18.309 6.746 26.189 1 112.28 ? CBC XNJ 401 A 1 HETATM 8 C CAZ XNJ . . . B 2 17.004 5.902 26.13 1 106.68 ? CAZ XNJ 401 A 1 HETATM 9 C CBA XNJ . . . B 2 15.637 6.586 25.953 1 103.18 ? CBA XNJ 401 A 1 HETATM 10 C CBB XNJ . . . B 2 14.531 5.867 25.898 1 97.71 ? CBB XNJ 401 A 1 HETATM 11 C CAY XNJ . . . B 2 17.054 4.587 26.259 1 102.51 ? CAY XNJ 401 A 1 HETATM 12 C CAX XNJ . . . B 2 15.774 3.75 26.2 1 97.72 ? CAX XNJ 401 A 1 HETATM 13 C CAV XNJ . . . B 2 14.611 4.35 26.042 1 92.96 ? CAV XNJ 401 A 1 HETATM 14 C CAU XNJ . . . B 2 13.322 3.522 25.97 1 83.27 ? CAU XNJ 401 A 1 HETATM 15 O OAW XNJ . . . B 2 13.323 2.366 26.24 1 85.95 ? OAW XNJ 401 A 1 HETATM 16 N NAT XNJ . . . B 2 12.098 4.182 25.538 1 70.64 ? NAT XNJ 401 A 1 HETATM 17 C CAO XNJ . . . B 2 10.871 3.402 25.439 1 61.4 ? CAO XNJ 401 A 1 HETATM 18 C CAN XNJ . . . B 2 10.533 2.944 24.253 1 58.23 ? CAN XNJ 401 A 1 HETATM 19 C CAP XNJ . . . B 2 9.994 3.111 26.652 1 54.9 ? CAP XNJ 401 A 1 HETATM 20 C CAQ XNJ . . . B 2 8.888 2.394 26.518 1 50.98 ? CAQ XNJ 401 A 1 HETATM 21 C CAR XNJ . . . B 2 8.495 1.862 25.14 1 53.07 ? CAR XNJ 401 A 1 HETATM 22 C CAS XNJ . . . B 2 7.225 1.035 24.959 1 44.65 ? CAS XNJ 401 A 1 HETATM 23 C CAM XNJ . . . B 2 9.264 2.114 24.101 1 57.88 ? CAM XNJ 401 A 1 HETATM 24 N NAL XNJ . . . B 2 8.873 1.607 22.8 1 59.94 ? NAL XNJ 401 A 1 HETATM 25 C CAJ XNJ . . . B 2 9.792 1.052 21.811 1 62.49 ? CAJ XNJ 401 A 1 HETATM 26 N NAK XNJ . . . B 2 9.313 0.599 20.542 1 60.06 ? NAK XNJ 401 A 1 HETATM 27 S SAI XNJ . . . B 2 11.373 0.823 21.854 1 61.85 ? SAI XNJ 401 A 1 HETATM 28 C CAH XNJ . . . B 2 11.774 0.182 20.47 1 63.47 ? CAH XNJ 401 A 1 HETATM 29 C CAG XNJ . . . B 2 10.551 0.048 19.681 1 57.34 ? CAG XNJ 401 A 1 HETATM 30 C CAF XNJ . . . B 2 10.32 -0.508 18.272 1 48.5 ? CAF XNJ 401 A 1 HETATM 31 C CAA XNJ . . . B 2 11.193 -1.226 17.668 1 50.69 ? CAA XNJ 401 A 1 HETATM 32 C CAB XNJ . . . B 2 10.883 -1.743 16.304 1 49.52 ? CAB XNJ 401 A 1 HETATM 33 C CAC XNJ . . . B 2 9.723 -1.466 15.735 1 43.31 ? CAC XNJ 401 A 1 HETATM 34 N NAD XNJ . . . B 2 8.711 -0.643 16.445 1 36.2 ? NAD XNJ 401 A 1 HETATM 35 C CAE XNJ . . . B 2 8.982 -0.193 17.629 1 36.21 ? CAE XNJ 401 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 35 #