data_7TVS # _model_server_result.job_id fvOD72JXoFnsslKQnrc4Ww _model_server_result.datetime_utc '2024-11-08 17:58:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7tvs # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":403}' # _entry.id 7TVS # _exptl.entry_id 7TVS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 114.329 _cell.angle_gamma 90 _cell.entry_id 7TVS _cell.length_a 97.08 _cell.length_b 80.888 _cell.length_c 51.912 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7TVS _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 83 n n S C1 DMS sing 84 n n S C2 DMS sing 85 n n C1 H11 DMS sing 86 n n C1 H12 DMS sing 87 n n C1 H13 DMS sing 88 n n C2 H21 DMS sing 89 n n C2 H22 DMS sing 90 n n C2 H23 DMS sing 91 n n # _atom_sites.entry_id 7TVS _atom_sites.fract_transf_matrix[1][1] 0.010301 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004657 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012363 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021141 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 XNJ A 1 401 401 XNJ XNJ . C 3 DMS A 1 402 404 DMS DMS . D 3 DMS A 1 403 405 DMS DMS . E 4 HOH A 1 501 42 HOH HOH . E 4 HOH A 2 502 39 HOH HOH . E 4 HOH A 3 503 25 HOH HOH . E 4 HOH A 4 504 21 HOH HOH . E 4 HOH A 5 505 24 HOH HOH . E 4 HOH A 6 506 20 HOH HOH . E 4 HOH A 7 507 38 HOH HOH . E 4 HOH A 8 508 46 HOH HOH . E 4 HOH A 9 509 40 HOH HOH . E 4 HOH A 10 510 28 HOH HOH . E 4 HOH A 11 511 32 HOH HOH . E 4 HOH A 12 512 8 HOH HOH . E 4 HOH A 13 513 1 HOH HOH . E 4 HOH A 14 514 12 HOH HOH . E 4 HOH A 15 515 26 HOH HOH . E 4 HOH A 16 516 11 HOH HOH . E 4 HOH A 17 517 43 HOH HOH . E 4 HOH A 18 518 9 HOH HOH . E 4 HOH A 19 519 15 HOH HOH . E 4 HOH A 20 520 6 HOH HOH . E 4 HOH A 21 521 14 HOH HOH . E 4 HOH A 22 522 44 HOH HOH . E 4 HOH A 23 523 16 HOH HOH . E 4 HOH A 24 524 33 HOH HOH . E 4 HOH A 25 525 19 HOH HOH . E 4 HOH A 26 526 35 HOH HOH . E 4 HOH A 27 527 34 HOH HOH . E 4 HOH A 28 528 22 HOH HOH . E 4 HOH A 29 529 18 HOH HOH . E 4 HOH A 30 530 5 HOH HOH . E 4 HOH A 31 531 4 HOH HOH . E 4 HOH A 32 532 23 HOH HOH . E 4 HOH A 33 533 10 HOH HOH . E 4 HOH A 34 534 27 HOH HOH . E 4 HOH A 35 535 45 HOH HOH . E 4 HOH A 36 536 3 HOH HOH . E 4 HOH A 37 537 36 HOH HOH . E 4 HOH A 38 538 17 HOH HOH . E 4 HOH A 39 539 37 HOH HOH . E 4 HOH A 40 540 30 HOH HOH . E 4 HOH A 41 541 13 HOH HOH . E 4 HOH A 42 542 7 HOH HOH . E 4 HOH A 43 543 29 HOH HOH . E 4 HOH A 44 544 2 HOH HOH . E 4 HOH A 45 545 31 HOH HOH . E 4 HOH A 46 546 41 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . D 3 5.328 19.356 7.76 1 84.16 ? S DMS 403 A 1 HETATM 2 O O DMS . . . D 3 4.825 19.057 6.385 1 86.59 ? O DMS 403 A 1 HETATM 3 C C1 DMS . . . D 3 6.777 18.32 8.104 1 81.21 ? C1 DMS 403 A 1 HETATM 4 C C2 DMS . . . D 3 4.15 18.706 8.974 1 81.34 ? C2 DMS 403 A 1 # _model_server_stats.io_time_ms 117 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 4 #