data_7TWU # _model_server_result.job_id WkxCO84tjWuAX1axpVxoJw _model_server_result.datetime_utc '2024-11-28 04:06:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7twu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 7TWU # _exptl.entry_id 7TWU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.411 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYL-L-HOMOCYSTEINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7TWU _cell.length_a 93.754 _cell.length_b 93.754 _cell.length_c 188.203 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7TWU _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 60 A CYS 48 1_555 B SG CYS 151 B CYS 139 3_444 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? disulf ? disulf2 A SG CYS 151 A CYS 139 1_555 B SG CYS 60 B CYS 48 3_444 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? # _chem_comp.formula 'C14 H20 N6 O5 S' _chem_comp.formula_weight 384.411 _chem_comp.id SAH _chem_comp.mon_nstd_flag . _chem_comp.name S-ADENOSYL-L-HOMOCYSTEINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAH sing 368 n n N HN1 SAH sing 369 n n N HN2 SAH sing 370 n n CA CB SAH sing 371 n n CA C SAH sing 372 n n CA HA SAH sing 373 n n CB CG SAH sing 374 n n CB HB1 SAH sing 375 n n CB HB2 SAH sing 376 n n CG SD SAH sing 377 n n CG HG1 SAH sing 378 n n CG HG2 SAH sing 379 n n SD C5' SAH sing 380 n n C O SAH doub 381 n n C OXT SAH sing 382 n n OXT HXT SAH sing 383 n n C5' C4' SAH sing 384 n n C5' "H5'1" SAH sing 385 n n C5' "H5'2" SAH sing 386 n n C4' O4' SAH sing 387 n n C4' C3' SAH sing 388 n n C4' H4' SAH sing 389 n n O4' C1' SAH sing 390 n n C3' O3' SAH sing 391 n n C3' C2' SAH sing 392 n n C3' H3' SAH sing 393 n n O3' HO3' SAH sing 394 n n C2' O2' SAH sing 395 n n C2' C1' SAH sing 396 n n C2' H2' SAH sing 397 n n O2' HO2' SAH sing 398 n n C1' N9 SAH sing 399 n n C1' H1' SAH sing 400 n n N9 C8 SAH sing 401 n y N9 C4 SAH sing 402 n y C8 N7 SAH doub 403 n y C8 H8 SAH sing 404 n n N7 C5 SAH sing 405 n y C5 C6 SAH sing 406 n y C5 C4 SAH doub 407 n y C6 N6 SAH sing 408 n n C6 N1 SAH doub 409 n y N6 HN61 SAH sing 410 n n N6 HN62 SAH sing 411 n n N1 C2 SAH sing 412 n y C2 N3 SAH doub 413 n y C2 H2 SAH sing 414 n n N3 C4 SAH sing 415 n y # _atom_sites.entry_id 7TWU _atom_sites.fract_transf_matrix[1][1] 0.010666 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010666 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005313 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SAH A 1 301 301 SAH SAH . D 3 CD A 1 302 1 CD CD . E 4 EDO A 1 303 1 EDO EDO . F 4 EDO A 1 304 4 EDO EDO . G 4 EDO A 1 305 7 EDO EDO . H 4 EDO A 1 306 9 EDO EDO . I 4 EDO A 1 307 10 EDO EDO . J 4 EDO A 1 308 12 EDO EDO . K 4 EDO A 1 309 13 EDO EDO . L 4 EDO A 1 310 14 EDO EDO . M 4 EDO A 1 311 401 EDO EDO . N 5 KNX B 1 301 301 KNX LIG . O 4 EDO B 1 302 2 EDO EDO . P 4 EDO B 1 303 3 EDO EDO . Q 4 EDO B 1 304 5 EDO EDO . R 4 EDO B 1 305 6 EDO EDO . S 4 EDO B 1 306 8 EDO EDO . T 4 EDO B 1 307 11 EDO EDO . U 6 HOH A 1 401 67 HOH HOH . U 6 HOH A 2 402 226 HOH HOH . U 6 HOH A 3 403 227 HOH HOH . U 6 HOH A 4 404 228 HOH HOH . U 6 HOH A 5 405 202 HOH HOH . U 6 HOH A 6 406 198 HOH HOH . U 6 HOH A 7 407 89 HOH HOH . U 6 HOH A 8 408 241 HOH HOH . U 6 HOH A 9 409 238 HOH HOH . U 6 HOH A 10 410 83 HOH HOH . U 6 HOH A 11 411 93 HOH HOH . U 6 HOH A 12 412 247 HOH HOH . U 6 HOH A 13 413 255 HOH HOH . U 6 HOH A 14 414 45 HOH HOH . U 6 HOH A 15 415 214 HOH HOH . U 6 HOH A 16 416 58 HOH HOH . U 6 HOH A 17 417 144 HOH HOH . U 6 HOH A 18 418 99 HOH HOH . U 6 HOH A 19 419 191 HOH HOH . U 6 HOH A 20 420 256 HOH HOH . U 6 HOH A 21 421 250 HOH HOH . U 6 HOH A 22 422 222 HOH HOH . U 6 HOH A 23 423 108 HOH HOH . U 6 HOH A 24 424 239 HOH HOH . U 6 HOH A 25 425 123 HOH HOH . U 6 HOH A 26 426 251 HOH HOH . U 6 HOH A 27 427 6 HOH HOH . U 6 HOH A 28 428 213 HOH HOH . U 6 HOH A 29 429 19 HOH HOH . U 6 HOH A 30 430 194 HOH HOH . U 6 HOH A 31 431 62 HOH HOH . U 6 HOH A 32 432 253 HOH HOH . U 6 HOH A 33 433 244 HOH HOH . U 6 HOH A 34 434 82 HOH HOH . U 6 HOH A 35 435 42 HOH HOH . U 6 HOH A 36 436 69 HOH HOH . U 6 HOH A 37 437 192 HOH HOH . U 6 HOH A 38 438 87 HOH HOH . U 6 HOH A 39 439 7 HOH HOH . U 6 HOH A 40 440 29 HOH HOH . U 6 HOH A 41 441 242 HOH HOH . U 6 HOH A 42 442 257 HOH HOH . U 6 HOH A 43 443 77 HOH HOH . U 6 HOH A 44 444 48 HOH HOH . U 6 HOH A 45 445 43 HOH HOH . U 6 HOH A 46 446 37 HOH HOH . U 6 HOH A 47 447 200 HOH HOH . U 6 HOH A 48 448 246 HOH HOH . U 6 HOH A 49 449 80 HOH HOH . U 6 HOH A 50 450 22 HOH HOH . U 6 HOH A 51 451 81 HOH HOH . U 6 HOH A 52 452 107 HOH HOH . U 6 HOH A 53 453 233 HOH HOH . U 6 HOH A 54 454 249 HOH HOH . U 6 HOH A 55 455 34 HOH HOH . U 6 HOH A 56 456 230 HOH HOH . U 6 HOH A 57 457 186 HOH HOH . U 6 HOH A 58 458 234 HOH HOH . U 6 HOH A 59 459 187 HOH HOH . V 6 HOH B 1 401 196 HOH HOH . V 6 HOH B 2 402 220 HOH HOH . V 6 HOH B 3 403 225 HOH HOH . V 6 HOH B 4 404 224 HOH HOH . V 6 HOH B 5 405 207 HOH HOH . V 6 HOH B 6 406 40 HOH HOH . V 6 HOH B 7 407 44 HOH HOH . V 6 HOH B 8 408 2 HOH HOH . V 6 HOH B 9 409 72 HOH HOH . V 6 HOH B 10 410 204 HOH HOH . V 6 HOH B 11 411 56 HOH HOH . V 6 HOH B 12 412 190 HOH HOH . V 6 HOH B 13 413 100 HOH HOH . V 6 HOH B 14 414 199 HOH HOH . V 6 HOH B 15 415 101 HOH HOH . V 6 HOH B 16 416 217 HOH HOH . V 6 HOH B 17 417 84 HOH HOH . V 6 HOH B 18 418 215 HOH HOH . V 6 HOH B 19 419 189 HOH HOH . V 6 HOH B 20 420 240 HOH HOH . V 6 HOH B 21 421 27 HOH HOH . V 6 HOH B 22 422 30 HOH HOH . V 6 HOH B 23 423 12 HOH HOH . V 6 HOH B 24 424 195 HOH HOH . V 6 HOH B 25 425 208 HOH HOH . V 6 HOH B 26 426 8 HOH HOH . V 6 HOH B 27 427 120 HOH HOH . V 6 HOH B 28 428 193 HOH HOH . V 6 HOH B 29 429 38 HOH HOH . V 6 HOH B 30 430 245 HOH HOH . V 6 HOH B 31 431 74 HOH HOH . V 6 HOH B 32 432 216 HOH HOH . V 6 HOH B 33 433 203 HOH HOH . V 6 HOH B 34 434 210 HOH HOH . V 6 HOH B 35 435 248 HOH HOH . V 6 HOH B 36 436 115 HOH HOH . V 6 HOH B 37 437 54 HOH HOH . V 6 HOH B 38 438 3 HOH HOH . V 6 HOH B 39 439 218 HOH HOH . V 6 HOH B 40 440 90 HOH HOH . V 6 HOH B 41 441 254 HOH HOH . V 6 HOH B 42 442 221 HOH HOH . V 6 HOH B 43 443 68 HOH HOH . V 6 HOH B 44 444 156 HOH HOH . V 6 HOH B 45 445 243 HOH HOH . V 6 HOH B 46 446 23 HOH HOH . V 6 HOH B 47 447 41 HOH HOH . V 6 HOH B 48 448 52 HOH HOH . V 6 HOH B 49 449 124 HOH HOH . V 6 HOH B 50 450 237 HOH HOH . V 6 HOH B 51 451 110 HOH HOH . V 6 HOH B 52 452 15 HOH HOH . V 6 HOH B 53 453 59 HOH HOH . V 6 HOH B 54 454 24 HOH HOH . V 6 HOH B 55 455 223 HOH HOH . V 6 HOH B 56 456 236 HOH HOH . V 6 HOH B 57 457 188 HOH HOH . V 6 HOH B 58 458 205 HOH HOH . V 6 HOH B 59 459 197 HOH HOH . V 6 HOH B 60 460 235 HOH HOH . V 6 HOH B 61 461 212 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAH . . . C 2 -5.801 -20.444 -29.255 1 57.52 ? N SAH 301 A 1 HETATM 2 C CA SAH . . . C 2 -5.258 -19.262 -29.91 1 58.65 ? CA SAH 301 A 1 HETATM 3 C CB SAH . . . C 2 -4.934 -18.162 -28.896 1 60.1 ? CB SAH 301 A 1 HETATM 4 C CG SAH . . . C 2 -4.326 -18.525 -27.541 1 57.16 ? CG SAH 301 A 1 HETATM 5 S SD SAH . . . C 2 -3.881 -17.015 -26.615 1 61.78 ? SD SAH 301 A 1 HETATM 6 C C SAH . . . C 2 -4.023 -19.628 -30.733 1 57.52 ? C SAH 301 A 1 HETATM 7 O O SAH . . . C 2 -3.227 -18.756 -31.102 1 52.67 ? O SAH 301 A 1 HETATM 8 O OXT SAH . . . C 2 -3.815 -20.809 -31.049 1 53.42 ? OXT SAH 301 A 1 HETATM 9 C C5' SAH . . . C 2 -4.58 -17.65 -25.063 1 60.17 ? C5' SAH 301 A 1 HETATM 10 C C4' SAH . . . C 2 -6.08 -17.38 -24.915 1 62.77 ? C4' SAH 301 A 1 HETATM 11 O O4' SAH . . . C 2 -6.556 -17.775 -23.631 1 62.24 ? O4' SAH 301 A 1 HETATM 12 C C3' SAH . . . C 2 -6.438 -15.907 -25.063 1 62.56 ? C3' SAH 301 A 1 HETATM 13 O O3' SAH . . . C 2 -7.416 -15.771 -26.072 1 55.14 ? O3' SAH 301 A 1 HETATM 14 C C2' SAH . . . C 2 -7.072 -15.541 -23.732 1 62.66 ? C2' SAH 301 A 1 HETATM 15 O O2' SAH . . . C 2 -8.123 -14.619 -23.894 1 63.89 ? O2' SAH 301 A 1 HETATM 16 C C1' SAH . . . C 2 -7.584 -16.884 -23.243 1 63.17 ? C1' SAH 301 A 1 HETATM 17 N N9 SAH . . . C 2 -7.81 -16.886 -21.79 1 63.05 ? N9 SAH 301 A 1 HETATM 18 C C8 SAH . . . C 2 -7.364 -15.943 -20.906 1 64.77 ? C8 SAH 301 A 1 HETATM 19 N N7 SAH . . . C 2 -7.773 -16.298 -19.667 1 63.68 ? N7 SAH 301 A 1 HETATM 20 C C5 SAH . . . C 2 -8.475 -17.45 -19.735 1 65.17 ? C5 SAH 301 A 1 HETATM 21 C C6 SAH . . . C 2 -9.111 -18.229 -18.762 1 68.92 ? C6 SAH 301 A 1 HETATM 22 N N6 SAH . . . C 2 -9.082 -17.88 -17.475 1 74.7 ? N6 SAH 301 A 1 HETATM 23 N N1 SAH . . . C 2 -9.765 -19.384 -19.133 1 68.13 ? N1 SAH 301 A 1 HETATM 24 C C2 SAH . . . C 2 -9.785 -19.746 -20.472 1 68.68 ? C2 SAH 301 A 1 HETATM 25 N N3 SAH . . . C 2 -9.158 -18.966 -21.442 1 68.35 ? N3 SAH 301 A 1 HETATM 26 C C4 SAH . . . C 2 -8.507 -17.831 -21.078 1 67.73 ? C4 SAH 301 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 252 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 26 #