data_7TWU # _model_server_result.job_id py35_j-YocRnCFzkMormxg _model_server_result.datetime_utc '2025-02-17 18:45:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7twu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":301}' # _entry.id 7TWU # _exptl.entry_id 7TWU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 623.531 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "5'-([(3S)-3-amino-3-carboxypropyl]{4-[(4R)-7,8-dichloro-1,2,3,4-tetrahydroisoquinolin-4-yl]butyl}amino)-5'-deoxyadenosine" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7TWU _cell.length_a 93.754 _cell.length_b 93.754 _cell.length_c 188.203 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7TWU _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id N _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 60 A CYS 48 1_555 B SG CYS 151 B CYS 139 3_444 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? disulf ? disulf2 A SG CYS 151 A CYS 139 1_555 B SG CYS 60 B CYS 48 3_444 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? # _chem_comp.formula 'C27 H36 Cl2 N8 O5' _chem_comp.formula_weight 623.531 _chem_comp.id KNX _chem_comp.mon_nstd_flag . _chem_comp.name "5'-([(3S)-3-amino-3-carboxypropyl]{4-[(4R)-7,8-dichloro-1,2,3,4-tetrahydroisoquinolin-4-yl]butyl}amino)-5'-deoxyadenosine" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N7 C4 KNX sing 182 n n C4 N2 KNX doub 183 n y C4 C1 KNX sing 184 n y N2 C3 KNX sing 185 n y N3 C1 KNX sing 186 n y N3 C5 KNX doub 187 n y C1 C2 KNX doub 188 n y C3 N1 KNX doub 189 n y C5 N4 KNX sing 190 n y C2 N1 KNX sing 191 n y C2 N4 KNX sing 192 n y N4 C6 KNX sing 193 n n C6 O1 KNX sing 194 n n C6 C9 KNX sing 195 n n O1 C7 KNX sing 196 n n C9 O3 KNX sing 197 n n C9 C8 KNX sing 198 n n C7 C8 KNX sing 199 n n C7 C10 KNX sing 200 n n C8 O2 KNX sing 201 n n C10 N5 KNX sing 202 n n C16 C17 KNX sing 203 n n C16 C15 KNX sing 204 n n C17 C18 KNX sing 205 n n N5 C15 KNX sing 206 n n N5 C11 KNX sing 207 n n C23 N6 KNX sing 208 n n C23 C19 KNX sing 209 n n N6 C22 KNX sing 210 n n C18 C19 KNX sing 211 n n C11 C12 KNX sing 212 n n C19 C20 KNX sing 213 n n C22 C21 KNX sing 214 n n C12 C13 KNX sing 215 n n C20 C21 KNX doub 216 n y C20 C24 KNX sing 217 n y C21 C27 KNX sing 218 n y N8 C13 KNX sing 219 n n C13 C14 KNX sing 220 n n C24 C25 KNX doub 221 n y C27 CL1 KNX sing 222 n n C27 C26 KNX doub 223 n y C14 O5 KNX doub 224 n n C14 O4 KNX sing 225 n n C25 C26 KNX sing 226 n y C26 CL2 KNX sing 227 n n C5 H1 KNX sing 228 n n C6 H2 KNX sing 229 n n C7 H3 KNX sing 230 n n C8 H4 KNX sing 231 n n C10 H5 KNX sing 232 n n C10 H6 KNX sing 233 n n C13 H7 KNX sing 234 n n C15 H8 KNX sing 235 n n C15 H9 KNX sing 236 n n C17 H10 KNX sing 237 n n C17 H11 KNX sing 238 n n C22 H12 KNX sing 239 n n C22 H13 KNX sing 240 n n C24 H14 KNX sing 241 n n C11 H15 KNX sing 242 n n C11 H16 KNX sing 243 n n C12 H17 KNX sing 244 n n C12 H18 KNX sing 245 n n C16 H19 KNX sing 246 n n C16 H20 KNX sing 247 n n C18 H21 KNX sing 248 n n C18 H22 KNX sing 249 n n C19 H23 KNX sing 250 n n C23 H24 KNX sing 251 n n C23 H25 KNX sing 252 n n C25 H26 KNX sing 253 n n C3 H27 KNX sing 254 n n C9 H28 KNX sing 255 n n N6 H30 KNX sing 256 n n N7 H32 KNX sing 257 n n N7 H33 KNX sing 258 n n N8 H34 KNX sing 259 n n N8 H35 KNX sing 260 n n O2 H37 KNX sing 261 n n O3 H38 KNX sing 262 n n O4 H39 KNX sing 263 n n # _atom_sites.entry_id 7TWU _atom_sites.fract_transf_matrix[1][1] 0.010666 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010666 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005313 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SAH A 1 301 301 SAH SAH . D 3 CD A 1 302 1 CD CD . E 4 EDO A 1 303 1 EDO EDO . F 4 EDO A 1 304 4 EDO EDO . G 4 EDO A 1 305 7 EDO EDO . H 4 EDO A 1 306 9 EDO EDO . I 4 EDO A 1 307 10 EDO EDO . J 4 EDO A 1 308 12 EDO EDO . K 4 EDO A 1 309 13 EDO EDO . L 4 EDO A 1 310 14 EDO EDO . M 4 EDO A 1 311 401 EDO EDO . N 5 KNX B 1 301 301 KNX LIG . O 4 EDO B 1 302 2 EDO EDO . P 4 EDO B 1 303 3 EDO EDO . Q 4 EDO B 1 304 5 EDO EDO . R 4 EDO B 1 305 6 EDO EDO . S 4 EDO B 1 306 8 EDO EDO . T 4 EDO B 1 307 11 EDO EDO . U 6 HOH A 1 401 67 HOH HOH . U 6 HOH A 2 402 226 HOH HOH . U 6 HOH A 3 403 227 HOH HOH . U 6 HOH A 4 404 228 HOH HOH . U 6 HOH A 5 405 202 HOH HOH . U 6 HOH A 6 406 198 HOH HOH . U 6 HOH A 7 407 89 HOH HOH . U 6 HOH A 8 408 241 HOH HOH . U 6 HOH A 9 409 238 HOH HOH . U 6 HOH A 10 410 83 HOH HOH . U 6 HOH A 11 411 93 HOH HOH . U 6 HOH A 12 412 247 HOH HOH . U 6 HOH A 13 413 255 HOH HOH . U 6 HOH A 14 414 45 HOH HOH . U 6 HOH A 15 415 214 HOH HOH . U 6 HOH A 16 416 58 HOH HOH . U 6 HOH A 17 417 144 HOH HOH . U 6 HOH A 18 418 99 HOH HOH . U 6 HOH A 19 419 191 HOH HOH . U 6 HOH A 20 420 256 HOH HOH . U 6 HOH A 21 421 250 HOH HOH . U 6 HOH A 22 422 222 HOH HOH . U 6 HOH A 23 423 108 HOH HOH . U 6 HOH A 24 424 239 HOH HOH . U 6 HOH A 25 425 123 HOH HOH . U 6 HOH A 26 426 251 HOH HOH . U 6 HOH A 27 427 6 HOH HOH . U 6 HOH A 28 428 213 HOH HOH . U 6 HOH A 29 429 19 HOH HOH . U 6 HOH A 30 430 194 HOH HOH . U 6 HOH A 31 431 62 HOH HOH . U 6 HOH A 32 432 253 HOH HOH . U 6 HOH A 33 433 244 HOH HOH . U 6 HOH A 34 434 82 HOH HOH . U 6 HOH A 35 435 42 HOH HOH . U 6 HOH A 36 436 69 HOH HOH . U 6 HOH A 37 437 192 HOH HOH . U 6 HOH A 38 438 87 HOH HOH . U 6 HOH A 39 439 7 HOH HOH . U 6 HOH A 40 440 29 HOH HOH . U 6 HOH A 41 441 242 HOH HOH . U 6 HOH A 42 442 257 HOH HOH . U 6 HOH A 43 443 77 HOH HOH . U 6 HOH A 44 444 48 HOH HOH . U 6 HOH A 45 445 43 HOH HOH . U 6 HOH A 46 446 37 HOH HOH . U 6 HOH A 47 447 200 HOH HOH . U 6 HOH A 48 448 246 HOH HOH . U 6 HOH A 49 449 80 HOH HOH . U 6 HOH A 50 450 22 HOH HOH . U 6 HOH A 51 451 81 HOH HOH . U 6 HOH A 52 452 107 HOH HOH . U 6 HOH A 53 453 233 HOH HOH . U 6 HOH A 54 454 249 HOH HOH . U 6 HOH A 55 455 34 HOH HOH . U 6 HOH A 56 456 230 HOH HOH . U 6 HOH A 57 457 186 HOH HOH . U 6 HOH A 58 458 234 HOH HOH . U 6 HOH A 59 459 187 HOH HOH . V 6 HOH B 1 401 196 HOH HOH . V 6 HOH B 2 402 220 HOH HOH . V 6 HOH B 3 403 225 HOH HOH . V 6 HOH B 4 404 224 HOH HOH . V 6 HOH B 5 405 207 HOH HOH . V 6 HOH B 6 406 40 HOH HOH . V 6 HOH B 7 407 44 HOH HOH . V 6 HOH B 8 408 2 HOH HOH . V 6 HOH B 9 409 72 HOH HOH . V 6 HOH B 10 410 204 HOH HOH . V 6 HOH B 11 411 56 HOH HOH . V 6 HOH B 12 412 190 HOH HOH . V 6 HOH B 13 413 100 HOH HOH . V 6 HOH B 14 414 199 HOH HOH . V 6 HOH B 15 415 101 HOH HOH . V 6 HOH B 16 416 217 HOH HOH . V 6 HOH B 17 417 84 HOH HOH . V 6 HOH B 18 418 215 HOH HOH . V 6 HOH B 19 419 189 HOH HOH . V 6 HOH B 20 420 240 HOH HOH . V 6 HOH B 21 421 27 HOH HOH . V 6 HOH B 22 422 30 HOH HOH . V 6 HOH B 23 423 12 HOH HOH . V 6 HOH B 24 424 195 HOH HOH . V 6 HOH B 25 425 208 HOH HOH . V 6 HOH B 26 426 8 HOH HOH . V 6 HOH B 27 427 120 HOH HOH . V 6 HOH B 28 428 193 HOH HOH . V 6 HOH B 29 429 38 HOH HOH . V 6 HOH B 30 430 245 HOH HOH . V 6 HOH B 31 431 74 HOH HOH . V 6 HOH B 32 432 216 HOH HOH . V 6 HOH B 33 433 203 HOH HOH . V 6 HOH B 34 434 210 HOH HOH . V 6 HOH B 35 435 248 HOH HOH . V 6 HOH B 36 436 115 HOH HOH . V 6 HOH B 37 437 54 HOH HOH . V 6 HOH B 38 438 3 HOH HOH . V 6 HOH B 39 439 218 HOH HOH . V 6 HOH B 40 440 90 HOH HOH . V 6 HOH B 41 441 254 HOH HOH . V 6 HOH B 42 442 221 HOH HOH . V 6 HOH B 43 443 68 HOH HOH . V 6 HOH B 44 444 156 HOH HOH . V 6 HOH B 45 445 243 HOH HOH . V 6 HOH B 46 446 23 HOH HOH . V 6 HOH B 47 447 41 HOH HOH . V 6 HOH B 48 448 52 HOH HOH . V 6 HOH B 49 449 124 HOH HOH . V 6 HOH B 50 450 237 HOH HOH . V 6 HOH B 51 451 110 HOH HOH . V 6 HOH B 52 452 15 HOH HOH . V 6 HOH B 53 453 59 HOH HOH . V 6 HOH B 54 454 24 HOH HOH . V 6 HOH B 55 455 223 HOH HOH . V 6 HOH B 56 456 236 HOH HOH . V 6 HOH B 57 457 188 HOH HOH . V 6 HOH B 58 458 205 HOH HOH . V 6 HOH B 59 459 197 HOH HOH . V 6 HOH B 60 460 235 HOH HOH . V 6 HOH B 61 461 212 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 KNX . . . N 5 30.998 -45.225 -35.45 1 53.87 ? N1 KNX 301 B 1 HETATM 2 N N3 KNX . . . N 5 32.795 -42.718 -37.244 1 47.68 ? N3 KNX 301 B 1 HETATM 3 C C4 KNX . . . N 5 31.608 -44.788 -38.188 1 51.59 ? C4 KNX 301 B 1 HETATM 4 C C5 KNX . . . N 5 32.891 -42.326 -35.994 1 55.61 ? C5 KNX 301 B 1 HETATM 5 C C6 KNX . . . N 5 32.159 -43.035 -33.684 1 47.88 ? C6 KNX 301 B 1 HETATM 6 C C7 KNX . . . N 5 31.174 -41.85 -32.016 1 53.62 ? C7 KNX 301 B 1 HETATM 7 C C8 KNX . . . N 5 32.682 -41.754 -31.762 1 57.76 ? C8 KNX 301 B 1 HETATM 8 C C10 KNX . . . N 5 30.398 -40.579 -31.763 1 52.77 ? C10 KNX 301 B 1 HETATM 9 C C13 KNX . . . N 5 28.942 -41.687 -27.222 1 46.21 ? C13 KNX 301 B 1 HETATM 10 C C15 KNX . . . N 5 30.19 -38.768 -30.136 1 49.1 ? C15 KNX 301 B 1 HETATM 11 C C17 KNX . . . N 5 28.835 -36.763 -30.845 1 57.76 ? C17 KNX 301 B 1 HETATM 12 C C20 KNX . . . N 5 27.055 -35.058 -27.853 1 60.27 ? C20 KNX 301 B 1 HETATM 13 C C21 KNX . . . N 5 26.022 -34.124 -27.774 1 65.82 ? C21 KNX 301 B 1 HETATM 14 C C22 KNX . . . N 5 25.787 -33.152 -28.904 1 65.15 ? C22 KNX 301 B 1 HETATM 15 C C24 KNX . . . N 5 27.267 -35.931 -26.786 1 62.31 ? C24 KNX 301 B 1 HETATM 16 C C26 KNX . . . N 5 25.467 -34.933 -25.583 1 64.85 ? C26 KNX 301 B 1 HETATM 17 C C1 KNX . . . N 5 32.046 -43.886 -37.196 1 51.72 ? C1 KNX 301 B 1 HETATM 18 C C11 KNX . . . N 5 30.119 -41.193 -29.439 1 56.03 ? C11 KNX 301 B 1 HETATM 19 C C12 KNX . . . N 5 29.149 -40.723 -28.4 1 55.73 ? C12 KNX 301 B 1 HETATM 20 C C14 KNX . . . N 5 28.04 -40.924 -26.264 1 47.85 ? C14 KNX 301 B 1 HETATM 21 C C16 KNX . . . N 5 29.182 -38.218 -31.132 1 64.23 ? C16 KNX 301 B 1 HETATM 22 C C18 KNX . . . N 5 28.156 -36.593 -29.511 1 58.02 ? C18 KNX 301 B 1 HETATM 23 C C19 KNX . . . N 5 27.928 -35.131 -29.089 1 62.01 ? C19 KNX 301 B 1 HETATM 24 C C2 KNX . . . N 5 31.71 -44.174 -35.887 1 52.55 ? C2 KNX 301 B 1 HETATM 25 C C23 KNX . . . N 5 27.365 -34.314 -30.243 1 62 ? C23 KNX 301 B 1 HETATM 26 C C25 KNX . . . N 5 26.481 -35.868 -25.655 1 64.08 ? C25 KNX 301 B 1 HETATM 27 C C27 KNX . . . N 5 25.24 -34.066 -26.622 1 66.09 ? C27 KNX 301 B 1 HETATM 28 C C3 KNX . . . N 5 30.636 -46.003 -36.466 1 51.37 ? C3 KNX 301 B 1 HETATM 29 C C9 KNX . . . N 5 33.29 -42.208 -33.09 1 49.97 ? C9 KNX 301 B 1 HETATM 30 N N2 KNX . . . N 5 30.88 -45.855 -37.777 1 54.23 ? N2 KNX 301 B 1 HETATM 31 N N4 KNX . . . N 5 32.25 -43.17 -35.129 1 52.38 ? N4 KNX 301 B 1 HETATM 32 N N5 KNX . . . N 5 30.596 -40.157 -30.376 1 54.6 ? N5 KNX 301 B 1 HETATM 33 N N6 KNX . . . N 5 26.952 -32.992 -29.765 1 63.74 ? N6 KNX 301 B 1 HETATM 34 N N7 KNX . . . N 5 31.861 -44.65 -39.489 1 54.92 ? N7 KNX 301 B 1 HETATM 35 N N8 KNX . . . N 5 28.236 -42.927 -27.656 1 45.76 ? N8 KNX 301 B 1 HETATM 36 O O1 KNX . . . N 5 31.023 -42.273 -33.384 1 51.3 ? O1 KNX 301 B 1 HETATM 37 O O2 KNX . . . N 5 33.022 -42.617 -30.681 1 50.88 ? O2 KNX 301 B 1 HETATM 38 O O3 KNX . . . N 5 34.507 -42.912 -32.993 1 52.48 ? O3 KNX 301 B 1 HETATM 39 O O4 KNX . . . N 5 28.523 -39.894 -25.743 1 54.55 ? O4 KNX 301 B 1 HETATM 40 O O5 KNX . . . N 5 26.882 -41.358 -26.112 1 51.4 ? O5 KNX 301 B 1 HETATM 41 CL CL1 KNX . . . N 5 23.955 -32.918 -26.485 1 84.45 ? CL1 KNX 301 B 1 HETATM 42 CL CL2 KNX . . . N 5 24.455 -34.84 -24.18 1 71.87 ? CL2 KNX 301 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 42 #