data_7TX2 # _model_server_result.job_id 5A58Gx_mEt1ekZ6p9RHeiA _model_server_result.datetime_utc '2024-11-28 06:00:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7tx2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":303}' # _entry.id 7TX2 # _exptl.entry_id 7TX2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 623.531 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "5'-([(3S)-3-amino-3-carboxypropyl]{4-[(4R)-7,8-dichloro-1,2,3,4-tetrahydroisoquinolin-4-yl]butyl}amino)-5'-deoxyadenosine" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7TX2 _cell.length_a 93.484 _cell.length_b 93.484 _cell.length_c 187.61 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7TX2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 60 A CYS 48 1_555 B SG CYS 151 B CYS 139 3_444 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? disulf ? disulf2 A SG CYS 151 A CYS 139 1_555 B SG CYS 60 B CYS 48 3_444 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? # _chem_comp.formula 'C27 H36 Cl2 N8 O5' _chem_comp.formula_weight 623.531 _chem_comp.id KNX _chem_comp.mon_nstd_flag . _chem_comp.name "5'-([(3S)-3-amino-3-carboxypropyl]{4-[(4R)-7,8-dichloro-1,2,3,4-tetrahydroisoquinolin-4-yl]butyl}amino)-5'-deoxyadenosine" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N7 C4 KNX sing 182 n n C4 N2 KNX doub 183 n y C4 C1 KNX sing 184 n y N2 C3 KNX sing 185 n y N3 C1 KNX sing 186 n y N3 C5 KNX doub 187 n y C1 C2 KNX doub 188 n y C3 N1 KNX doub 189 n y C5 N4 KNX sing 190 n y C2 N1 KNX sing 191 n y C2 N4 KNX sing 192 n y N4 C6 KNX sing 193 n n C6 O1 KNX sing 194 n n C6 C9 KNX sing 195 n n O1 C7 KNX sing 196 n n C9 O3 KNX sing 197 n n C9 C8 KNX sing 198 n n C7 C8 KNX sing 199 n n C7 C10 KNX sing 200 n n C8 O2 KNX sing 201 n n C10 N5 KNX sing 202 n n C16 C17 KNX sing 203 n n C16 C15 KNX sing 204 n n C17 C18 KNX sing 205 n n N5 C15 KNX sing 206 n n N5 C11 KNX sing 207 n n C23 N6 KNX sing 208 n n C23 C19 KNX sing 209 n n N6 C22 KNX sing 210 n n C18 C19 KNX sing 211 n n C11 C12 KNX sing 212 n n C19 C20 KNX sing 213 n n C22 C21 KNX sing 214 n n C12 C13 KNX sing 215 n n C20 C21 KNX doub 216 n y C20 C24 KNX sing 217 n y C21 C27 KNX sing 218 n y N8 C13 KNX sing 219 n n C13 C14 KNX sing 220 n n C24 C25 KNX doub 221 n y C27 CL1 KNX sing 222 n n C27 C26 KNX doub 223 n y C14 O5 KNX doub 224 n n C14 O4 KNX sing 225 n n C25 C26 KNX sing 226 n y C26 CL2 KNX sing 227 n n C5 H1 KNX sing 228 n n C6 H2 KNX sing 229 n n C7 H3 KNX sing 230 n n C8 H4 KNX sing 231 n n C10 H5 KNX sing 232 n n C10 H6 KNX sing 233 n n C13 H7 KNX sing 234 n n C15 H8 KNX sing 235 n n C15 H9 KNX sing 236 n n C17 H10 KNX sing 237 n n C17 H11 KNX sing 238 n n C22 H12 KNX sing 239 n n C22 H13 KNX sing 240 n n C24 H14 KNX sing 241 n n C11 H15 KNX sing 242 n n C11 H16 KNX sing 243 n n C12 H17 KNX sing 244 n n C12 H18 KNX sing 245 n n C16 H19 KNX sing 246 n n C16 H20 KNX sing 247 n n C18 H21 KNX sing 248 n n C18 H22 KNX sing 249 n n C19 H23 KNX sing 250 n n C23 H24 KNX sing 251 n n C23 H25 KNX sing 252 n n C25 H26 KNX sing 253 n n C3 H27 KNX sing 254 n n C9 H28 KNX sing 255 n n N6 H30 KNX sing 256 n n N7 H32 KNX sing 257 n n N7 H33 KNX sing 258 n n N8 H34 KNX sing 259 n n N8 H35 KNX sing 260 n n O2 H37 KNX sing 261 n n O3 H38 KNX sing 262 n n O4 H39 KNX sing 263 n n # _atom_sites.entry_id 7TX2 _atom_sites.fract_transf_matrix[1][1] 0.010697 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010697 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00533 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 EDO A 1 401 401 EDO EDO . D 3 KNX A 1 402 501 KNX LIG . E 2 EDO B 1 301 402 EDO EDO . F 2 EDO B 1 302 601 EDO EDO . G 3 KNX B 1 303 502 KNX LIG . H 4 HOH A 1 501 84 HOH HOH . H 4 HOH A 2 502 69 HOH HOH . H 4 HOH A 3 503 49 HOH HOH . H 4 HOH A 4 504 89 HOH HOH . H 4 HOH A 5 505 78 HOH HOH . H 4 HOH A 6 506 74 HOH HOH . H 4 HOH A 7 507 87 HOH HOH . H 4 HOH A 8 508 83 HOH HOH . H 4 HOH A 9 509 81 HOH HOH . I 4 HOH B 1 401 86 HOH HOH . I 4 HOH B 2 402 70 HOH HOH . I 4 HOH B 3 403 4 HOH HOH . I 4 HOH B 4 404 15 HOH HOH . I 4 HOH B 5 405 80 HOH HOH . I 4 HOH B 6 406 85 HOH HOH . I 4 HOH B 7 407 67 HOH HOH . I 4 HOH B 8 408 71 HOH HOH . I 4 HOH B 9 409 2 HOH HOH . I 4 HOH B 10 410 66 HOH HOH . I 4 HOH B 11 411 75 HOH HOH . I 4 HOH B 12 412 72 HOH HOH . I 4 HOH B 13 413 76 HOH HOH . I 4 HOH B 14 414 79 HOH HOH . I 4 HOH B 15 415 88 HOH HOH . I 4 HOH B 16 416 82 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 KNX . . . G 3 30.82 -45.059 -35.357 1 68.36 ? N1 KNX 303 B 1 HETATM 2 N N3 KNX . . . G 3 32.66 -42.571 -37.138 1 67.49 ? N3 KNX 303 B 1 HETATM 3 C C4 KNX . . . G 3 31.445 -44.603 -38.098 1 72.32 ? C4 KNX 303 B 1 HETATM 4 C C5 KNX . . . G 3 32.76 -42.186 -35.89 1 71.57 ? C5 KNX 303 B 1 HETATM 5 C C6 KNX . . . G 3 32.028 -42.88 -33.604 1 64.26 ? C6 KNX 303 B 1 HETATM 6 C C7 KNX . . . G 3 31.082 -41.687 -31.921 1 67.18 ? C7 KNX 303 B 1 HETATM 7 C C8 KNX . . . G 3 32.595 -41.502 -31.747 1 70.5 ? C8 KNX 303 B 1 HETATM 8 C C10 KNX . . . G 3 30.23 -40.476 -31.605 1 61.23 ? C10 KNX 303 B 1 HETATM 9 C C13 KNX . . . G 3 28.848 -41.705 -27.262 1 59.31 ? C13 KNX 303 B 1 HETATM 10 C C15 KNX . . . G 3 29.785 -38.762 -29.926 1 74.57 ? C15 KNX 303 B 1 HETATM 11 C C17 KNX . . . G 3 28.967 -36.506 -30.631 1 63.85 ? C17 KNX 303 B 1 HETATM 12 C C20 KNX . . . G 3 26.97 -34.905 -27.697 1 73.05 ? C20 KNX 303 B 1 HETATM 13 C C21 KNX . . . G 3 25.934 -33.979 -27.596 1 73.96 ? C21 KNX 303 B 1 HETATM 14 C C22 KNX . . . G 3 25.679 -32.996 -28.708 1 74.03 ? C22 KNX 303 B 1 HETATM 15 C C24 KNX . . . G 3 27.197 -35.782 -26.636 1 74.58 ? C24 KNX 303 B 1 HETATM 16 C C26 KNX . . . G 3 25.39 -34.812 -25.403 1 73.75 ? C26 KNX 303 B 1 HETATM 17 C C1 KNX . . . G 3 31.904 -43.734 -37.09 1 68.02 ? C1 KNX 303 B 1 HETATM 18 C C11 KNX . . . G 3 30.344 -40.976 -29.229 1 71.63 ? C11 KNX 303 B 1 HETATM 19 C C12 KNX . . . G 3 28.98 -40.91 -28.567 1 69.62 ? C12 KNX 303 B 1 HETATM 20 C C14 KNX . . . G 3 28.068 -40.861 -26.259 1 58.91 ? C14 KNX 303 B 1 HETATM 21 C C16 KNX . . . G 3 29.285 -37.924 -31.087 1 67.89 ? C16 KNX 303 B 1 HETATM 22 C C18 KNX . . . G 3 28.025 -36.398 -29.458 1 62.92 ? C18 KNX 303 B 1 HETATM 23 C C19 KNX . . . G 3 27.828 -34.956 -28.949 1 73.96 ? C19 KNX 303 B 1 HETATM 24 C C2 KNX . . . G 3 31.554 -44.022 -35.787 1 74.6 ? C2 KNX 303 B 1 HETATM 25 C C23 KNX . . . G 3 27.273 -34.078 -30.062 1 68.22 ? C23 KNX 303 B 1 HETATM 26 C C25 KNX . . . G 3 26.415 -35.738 -25.492 1 76.06 ? C25 KNX 303 B 1 HETATM 27 C C27 KNX . . . G 3 25.156 -33.939 -26.44 1 75.8 ? C27 KNX 303 B 1 HETATM 28 C C3 KNX . . . G 3 30.45 -45.818 -36.387 1 71.12 ? C3 KNX 303 B 1 HETATM 29 C C9 KNX . . . G 3 33.173 -42.035 -33.062 1 63.67 ? C9 KNX 303 B 1 HETATM 30 N N2 KNX . . . G 3 30.701 -45.664 -37.697 1 72.23 ? N2 KNX 303 B 1 HETATM 31 N N4 KNX . . . G 3 32.103 -43.025 -35.029 1 73.78 ? N4 KNX 303 B 1 HETATM 32 N N5 KNX . . . G 3 30.556 -39.959 -30.274 1 73.02 ? N5 KNX 303 B 1 HETATM 33 N N6 KNX . . . G 3 26.855 -32.776 -29.536 1 71.19 ? N6 KNX 303 B 1 HETATM 34 N N7 KNX . . . G 3 31.707 -44.438 -39.397 1 70.25 ? N7 KNX 303 B 1 HETATM 35 N N8 KNX . . . G 3 28.08 -42.959 -27.491 1 57.66 ? N8 KNX 303 B 1 HETATM 36 O O1 KNX . . . G 3 30.89 -42.124 -33.284 1 66.76 ? O1 KNX 303 B 1 HETATM 37 O O2 KNX . . . G 3 33.052 -42.277 -30.646 1 68.4 ? O2 KNX 303 B 1 HETATM 38 O O3 KNX . . . G 3 34.362 -42.774 -32.91 1 68.5 ? O3 KNX 303 B 1 HETATM 39 O O4 KNX . . . G 3 28.682 -39.934 -25.678 1 68.58 ? O4 KNX 303 B 1 HETATM 40 O O5 KNX . . . G 3 26.868 -41.153 -26.106 1 62.46 ? O5 KNX 303 B 1 HETATM 41 CL CL1 KNX . . . G 3 23.868 -32.791 -26.317 1 96.81 ? CL1 KNX 303 B 1 HETATM 42 CL CL2 KNX . . . G 3 24.383 -34.746 -23.987 1 86.91 ? CL2 KNX 303 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 42 #