data_7TX2
#
_model_server_result.job_id            1SlXniJfgII8AQMLFsXZ3Q 
_model_server_result.datetime_utc      '2025-02-17 19:18:07' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7tx2 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":402}' 
#
_entry.id    7TX2 
#
_exptl.entry_id    7TX2 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              623.531 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "5'-([(3S)-3-amino-3-carboxypropyl]{4-[(4R)-7,8-dichloro-1,2,3,4-tetrahydroisoquinolin-4-yl]butyl}amino)-5'-deoxyadenosine" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7TX2 
_cell.length_a            93.484 
_cell.length_b            93.484 
_cell.length_c            187.61 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7TX2 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 G N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 60 A CYS 48 1_555 B SG CYS 151 B CYS 139 3_444 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? 
disulf ? disulf2 A SG CYS 151 A CYS 139 1_555 B SG CYS 60 B CYS 48 3_444 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? 
#
_chem_comp.formula           'C27 H36 Cl2 N8 O5' 
_chem_comp.formula_weight    623.531 
_chem_comp.id                KNX 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "5'-([(3S)-3-amino-3-carboxypropyl]{4-[(4R)-7,8-dichloro-1,2,3,4-tetrahydroisoquinolin-4-yl]butyl}amino)-5'-deoxyadenosine" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N7 C4 KNX sing 182 n n 
C4 N2 KNX doub 183 n y 
C4 C1 KNX sing 184 n y 
N2 C3 KNX sing 185 n y 
N3 C1 KNX sing 186 n y 
N3 C5 KNX doub 187 n y 
C1 C2 KNX doub 188 n y 
C3 N1 KNX doub 189 n y 
C5 N4 KNX sing 190 n y 
C2 N1 KNX sing 191 n y 
C2 N4 KNX sing 192 n y 
N4 C6 KNX sing 193 n n 
C6 O1 KNX sing 194 n n 
C6 C9 KNX sing 195 n n 
O1 C7 KNX sing 196 n n 
C9 O3 KNX sing 197 n n 
C9 C8 KNX sing 198 n n 
C7 C8 KNX sing 199 n n 
C7 C10 KNX sing 200 n n 
C8 O2 KNX sing 201 n n 
C10 N5 KNX sing 202 n n 
C16 C17 KNX sing 203 n n 
C16 C15 KNX sing 204 n n 
C17 C18 KNX sing 205 n n 
N5 C15 KNX sing 206 n n 
N5 C11 KNX sing 207 n n 
C23 N6 KNX sing 208 n n 
C23 C19 KNX sing 209 n n 
N6 C22 KNX sing 210 n n 
C18 C19 KNX sing 211 n n 
C11 C12 KNX sing 212 n n 
C19 C20 KNX sing 213 n n 
C22 C21 KNX sing 214 n n 
C12 C13 KNX sing 215 n n 
C20 C21 KNX doub 216 n y 
C20 C24 KNX sing 217 n y 
C21 C27 KNX sing 218 n y 
N8 C13 KNX sing 219 n n 
C13 C14 KNX sing 220 n n 
C24 C25 KNX doub 221 n y 
C27 CL1 KNX sing 222 n n 
C27 C26 KNX doub 223 n y 
C14 O5 KNX doub 224 n n 
C14 O4 KNX sing 225 n n 
C25 C26 KNX sing 226 n y 
C26 CL2 KNX sing 227 n n 
C5 H1 KNX sing 228 n n 
C6 H2 KNX sing 229 n n 
C7 H3 KNX sing 230 n n 
C8 H4 KNX sing 231 n n 
C10 H5 KNX sing 232 n n 
C10 H6 KNX sing 233 n n 
C13 H7 KNX sing 234 n n 
C15 H8 KNX sing 235 n n 
C15 H9 KNX sing 236 n n 
C17 H10 KNX sing 237 n n 
C17 H11 KNX sing 238 n n 
C22 H12 KNX sing 239 n n 
C22 H13 KNX sing 240 n n 
C24 H14 KNX sing 241 n n 
C11 H15 KNX sing 242 n n 
C11 H16 KNX sing 243 n n 
C12 H17 KNX sing 244 n n 
C12 H18 KNX sing 245 n n 
C16 H19 KNX sing 246 n n 
C16 H20 KNX sing 247 n n 
C18 H21 KNX sing 248 n n 
C18 H22 KNX sing 249 n n 
C19 H23 KNX sing 250 n n 
C23 H24 KNX sing 251 n n 
C23 H25 KNX sing 252 n n 
C25 H26 KNX sing 253 n n 
C3 H27 KNX sing 254 n n 
C9 H28 KNX sing 255 n n 
N6 H30 KNX sing 256 n n 
N7 H32 KNX sing 257 n n 
N7 H33 KNX sing 258 n n 
N8 H34 KNX sing 259 n n 
N8 H35 KNX sing 260 n n 
O2 H37 KNX sing 261 n n 
O3 H38 KNX sing 262 n n 
O4 H39 KNX sing 263 n n 
#
_atom_sites.entry_id                     7TX2 
_atom_sites.fract_transf_matrix[1][1]    0.010697 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010697 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00533 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 EDO A 1 401 401 EDO EDO . 
D 3 KNX A 1 402 501 KNX LIG . 
E 2 EDO B 1 301 402 EDO EDO . 
F 2 EDO B 1 302 601 EDO EDO . 
G 3 KNX B 1 303 502 KNX LIG . 
H 4 HOH A 1 501 84 HOH HOH . 
H 4 HOH A 2 502 69 HOH HOH . 
H 4 HOH A 3 503 49 HOH HOH . 
H 4 HOH A 4 504 89 HOH HOH . 
H 4 HOH A 5 505 78 HOH HOH . 
H 4 HOH A 6 506 74 HOH HOH . 
H 4 HOH A 7 507 87 HOH HOH . 
H 4 HOH A 8 508 83 HOH HOH . 
H 4 HOH A 9 509 81 HOH HOH . 
I 4 HOH B 1 401 86 HOH HOH . 
I 4 HOH B 2 402 70 HOH HOH . 
I 4 HOH B 3 403 4 HOH HOH . 
I 4 HOH B 4 404 15 HOH HOH . 
I 4 HOH B 5 405 80 HOH HOH . 
I 4 HOH B 6 406 85 HOH HOH . 
I 4 HOH B 7 407 67 HOH HOH . 
I 4 HOH B 8 408 71 HOH HOH . 
I 4 HOH B 9 409 2 HOH HOH . 
I 4 HOH B 10 410 66 HOH HOH . 
I 4 HOH B 11 411 75 HOH HOH . 
I 4 HOH B 12 412 72 HOH HOH . 
I 4 HOH B 13 413 76 HOH HOH . 
I 4 HOH B 14 414 79 HOH HOH . 
I 4 HOH B 15 415 88 HOH HOH . 
I 4 HOH B 16 416 82 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 KNX . . . D 3 -9.268 -18.974 -21.305 1 84.73 ? N1 KNX 402 A 1 
HETATM 2 N N3 KNX . . . D 3 -7.747 -16.283 -19.52 1 89.12 ? N3 KNX 402 A 1 
HETATM 3 C C4 KNX . . . D 3 -9.043 -18.279 -18.565 1 91.13 ? C4 KNX 402 A 1 
HETATM 4 C C5 KNX . . . D 3 -7.479 -15.999 -20.773 1 85.39 ? C5 KNX 402 A 1 
HETATM 5 C C6 KNX . . . D 3 -7.868 -16.916 -23.111 1 82.02 ? C6 KNX 402 A 1 
HETATM 6 C C7 KNX . . . D 3 -6.328 -17.374 -24.786 1 82.51 ? C7 KNX 402 A 1 
HETATM 7 C C8 KNX . . . D 3 -6.741 -15.909 -24.973 1 86.82 ? C8 KNX 402 A 1 
HETATM 8 C C10 KNX . . . D 3 -4.836 -17.632 -24.815 1 79.07 ? C10 KNX 402 A 1 
HETATM 9 C C13 KNX . . . D 3 -5.342 -19.122 -29.561 1 71.58 ? C13 KNX 402 A 1 
HETATM 10 C C15 KNX . . . D 3 -3.086 -17.101 -26.441 1 70.71 ? C15 KNX 402 A 1 
HETATM 11 C C17 KNX . . . D 3 -0.513 -17.221 -26.141 1 70.46 ? C17 KNX 402 A 1 
HETATM 12 C C20 KNX . . . D 3 1.742 -18.22 -29.158 1 83.1 ? C20 KNX 402 A 1 
HETATM 13 C C21 KNX . . . D 3 3.046 -18.667 -29.389 1 88.52 ? C21 KNX 402 A 1 
HETATM 14 C C22 KNX . . . D 3 4.101 -18.5 -28.312 1 78.03 ? C22 KNX 402 A 1 
HETATM 15 C C24 KNX . . . D 3 0.783 -18.376 -30.159 1 80.8 ? C24 KNX 402 A 1 
HETATM 16 C C26 KNX . . . D 3 2.389 -19.404 -31.591 1 75.16 ? C26 KNX 402 A 1 
HETATM 17 C C1 KNX . . . D 3 -8.472 -17.468 -19.569 1 88.11 ? C1 KNX 402 A 1 
HETATM 18 C C11 KNX . . . D 3 -5.276 -18.014 -27.222 1 78.94 ? C11 KNX 402 A 1 
HETATM 19 C C12 KNX . . . D 3 -4.586 -18.281 -28.533 1 72.09 ? C12 KNX 402 A 1 
HETATM 20 C C14 KNX . . . D 3 -4.269 -19.592 -30.544 1 73.97 ? C14 KNX 402 A 1 
HETATM 21 C C16 KNX . . . D 3 -1.897 -17.63 -25.648 1 78.89 ? C16 KNX 402 A 1 
HETATM 22 C C18 KNX . . . D 3 -0.047 -17.952 -27.378 1 79.09 ? C18 KNX 402 A 1 
HETATM 23 C C19 KNX . . . D 3 1.371 -17.563 -27.841 1 77.99 ? C19 KNX 402 A 1 
HETATM 24 C C2 KNX . . . D 3 -8.621 -17.877 -20.878 1 86.5 ? C2 KNX 402 A 1 
HETATM 25 C C23 KNX . . . D 3 2.399 -17.805 -26.745 1 72.89 ? C23 KNX 402 A 1 
HETATM 26 C C25 KNX . . . D 3 1.099 -18.965 -31.366 1 72.58 ? C25 KNX 402 A 1 
HETATM 27 C C27 KNX . . . D 3 3.354 -19.257 -30.623 1 88.2 ? C27 KNX 402 A 1 
HETATM 28 C C3 KNX . . . D 3 -9.761 -19.661 -20.274 1 90.67 ? C3 KNX 402 A 1 
HETATM 29 C C9 KNX . . . D 3 -7.479 -15.554 -23.674 1 85.67 ? C9 KNX 402 A 1 
HETATM 30 N N2 KNX . . . D 3 -9.696 -19.398 -18.961 1 88.56 ? N2 KNX 402 A 1 
HETATM 31 N N4 KNX . . . D 3 -7.99 -16.931 -21.645 1 88.56 ? N4 KNX 402 A 1 
HETATM 32 N N5 KNX . . . D 3 -4.28 -17.904 -26.148 1 79.2 ? N5 KNX 402 A 1 
HETATM 33 N N6 KNX . . . D 3 3.751 -17.555 -27.256 1 75.55 ? N6 KNX 402 A 1 
HETATM 34 N N7 KNX . . . D 3 -8.969 -18.01 -17.263 1 93.42 ? N7 KNX 402 A 1 
HETATM 35 N N8 KNX . . . D 3 -5.96 -20.31 -28.915 1 73.11 ? N8 KNX 402 A 1 
HETATM 36 O O1 KNX . . . D 3 -6.804 -17.758 -23.479 1 79.11 ? O1 KNX 402 A 1 
HETATM 37 O O2 KNX . . . D 3 -7.569 -15.762 -26.121 1 76.73 ? O2 KNX 402 A 1 
HETATM 38 O O3 KNX . . . D 3 -8.582 -14.7 -23.885 1 89.51 ? O3 KNX 402 A 1 
HETATM 39 O O4 KNX . . . D 3 -3.53 -18.703 -31.024 1 70.02 ? O4 KNX 402 A 1 
HETATM 40 O O5 KNX . . . D 3 -4.176 -20.827 -30.737 1 71.14 ? O5 KNX 402 A 1 
HETATM 41 CL CL1 KNX . . . D 3 4.95 -19.837 -30.962 1 108.95 ? CL1 KNX 402 A 1 
HETATM 42 CL CL2 KNX . . . D 3 2.816 -20.148 -33.102 1 104.86 ? CL2 KNX 402 A 1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           323 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           42 
#