data_7TX5 # _model_server_result.job_id PSPOb9cNPfVijzWGZ_Nv8A _model_server_result.datetime_utc '2024-11-05 11:40:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7tx5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 7TX5 # loop_ _exptl.entry_id _exptl.method 7TX5 'X-RAY DIFFRACTION' 7TX5 'NEUTRON DIFFRACTION' # _entity.details ? _entity.formula_weight 559.316 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ADENOSINE-5-DIPHOSPHORIBOSE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 98.09 _cell.angle_gamma 90 _cell.entry_id 7TX5 _cell.length_a 132.808 _cell.length_b 36.653 _cell.length_c 38.233 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7TX5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C15 H23 N5 O14 P2' _chem_comp.formula_weight 559.316 _chem_comp.id APR _chem_comp.mon_nstd_flag . _chem_comp.name ADENOSINE-5-DIPHOSPHORIBOSE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 APR sing 13 n y N1 C6 APR doub 14 n y C2 N3 APR doub 15 n y C2 H2 APR sing 16 n n N3 C4 APR sing 17 n y C4 C5 APR doub 18 n y C4 N9 APR sing 19 n y C5 C6 APR sing 20 n y C5 N7 APR sing 21 n y C6 N6 APR sing 22 n n N6 H61 APR sing 23 n n N6 H62 APR sing 24 n n N7 C8 APR doub 25 n y C8 N9 APR sing 26 n y C8 H8 APR sing 27 n n N9 C1' APR sing 28 n n C1' C2' APR sing 29 n n C1' O4' APR sing 30 n n C1' "H'1" APR sing 31 n n C2' O2' APR sing 32 n n C2' C3' APR sing 33 n n C2' "H'2" APR sing 34 n n O2' "HO'2" APR sing 35 n n C3' O3' APR sing 36 n n C3' C4' APR sing 37 n n C3' "H'3" APR sing 38 n n O3' "HO'3" APR sing 39 n n O4' C4' APR sing 40 n n C4' C5' APR sing 41 n n C4' "H'4" APR sing 42 n n C5' O5' APR sing 43 n n C5' "H5'1" APR sing 44 n n C5' "H5'2" APR sing 45 n n O5' PA APR sing 46 n n PA O1A APR doub 47 n n PA O2A APR sing 48 n n PA O3A APR sing 49 n n O2A HOA2 APR sing 50 n n O3A PB APR sing 51 n n PB O1B APR doub 52 n n PB O2B APR sing 53 n n PB O5D APR sing 54 n n O2B HOB2 APR sing 55 n n O5D C5D APR sing 56 n n C5D C4D APR sing 57 n n C5D H5R1 APR sing 58 n n C5D H5R2 APR sing 59 n n O4D C1D APR sing 60 n n O4D C4D APR sing 61 n n O1D C1D APR sing 62 n n O1D HOR1 APR sing 63 n n C1D C2D APR sing 64 n n C1D "HR'1" APR sing 65 n n O2D C2D APR sing 66 n n O2D HOR2 APR sing 67 n n C2D C3D APR sing 68 n n C2D "HR'2" APR sing 69 n n O3D C3D APR sing 70 n n O3D HOR3 APR sing 71 n n C3D C4D APR sing 72 n n C3D "HR'3" APR sing 73 n n C4D "HR'4" APR sing 74 n n # _atom_sites.entry_id 7TX5 _atom_sites.fract_transf_matrix[1][1] 0.00753 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00107 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.027283 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.026418 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 APR A 1 201 201 APR LIG . C 3 HOH A 1 301 46 HOH HOH . C 3 HOH A 2 302 77 HOH HOH . C 3 HOH A 3 303 88 HOH HOH . C 3 HOH A 4 304 40 HOH HOH . C 3 HOH A 5 305 25 HOH HOH . C 3 HOH A 6 306 93 HOH HOH . C 3 HOH A 7 307 19 HOH HOH . C 3 HOH A 8 308 61 HOH HOH . C 3 HOH A 9 309 69 HOH HOH . C 3 HOH A 10 310 47 HOH HOH . C 3 HOH A 11 311 42 HOH HOH . C 3 HOH A 12 312 3 HOH HOH . C 3 HOH A 13 313 91 HOH HOH . C 3 HOH A 14 314 82 HOH HOH . C 3 HOH A 15 315 83 HOH HOH . C 3 HOH A 16 316 67 HOH HOH . C 3 HOH A 17 317 39 HOH HOH . C 3 HOH A 18 318 16 HOH HOH . C 3 HOH A 19 319 12 HOH HOH . C 3 HOH A 20 320 53 HOH HOH . C 3 HOH A 21 321 70 HOH HOH . C 3 HOH A 22 322 57 HOH HOH . C 3 HOH A 23 323 13 HOH HOH . C 3 HOH A 24 324 9 HOH HOH . C 3 HOH A 25 325 55 HOH HOH . C 3 HOH A 26 326 63 HOH HOH . C 3 HOH A 27 327 10 HOH HOH . C 3 HOH A 28 328 17 HOH HOH . C 3 HOH A 29 329 41 HOH HOH . C 3 HOH A 30 330 6 HOH HOH . C 3 HOH A 31 331 49 HOH HOH . C 3 HOH A 32 332 33 HOH HOH . C 3 HOH A 33 333 20 HOH HOH . C 3 HOH A 34 334 65 HOH HOH . C 3 HOH A 35 335 66 HOH HOH . C 3 HOH A 36 336 28 HOH HOH . C 3 HOH A 37 337 1 HOH HOH . C 3 HOH A 38 338 72 HOH HOH . C 3 HOH A 39 339 26 HOH HOH . C 3 HOH A 40 340 7 HOH HOH . C 3 HOH A 41 341 23 HOH HOH . C 3 HOH A 42 342 8 HOH HOH . C 3 HOH A 43 343 86 HOH HOH . C 3 HOH A 44 344 29 HOH HOH . C 3 HOH A 45 345 51 HOH HOH . C 3 HOH A 46 346 27 HOH HOH . C 3 HOH A 47 347 62 HOH HOH . C 3 HOH A 48 348 14 HOH HOH . C 3 HOH A 49 349 48 HOH HOH . C 3 HOH A 50 350 34 HOH HOH . C 3 HOH A 51 351 15 HOH HOH . C 3 HOH A 52 352 32 HOH HOH . C 3 HOH A 53 353 11 HOH HOH . C 3 HOH A 54 354 75 HOH HOH . C 3 HOH A 55 355 37 HOH HOH . C 3 HOH A 56 356 73 HOH HOH . C 3 HOH A 57 357 2 HOH HOH . C 3 HOH A 58 358 87 HOH HOH . C 3 HOH A 59 359 59 HOH HOH . C 3 HOH A 60 360 36 HOH HOH . C 3 HOH A 61 361 38 HOH HOH . C 3 HOH A 62 362 24 HOH HOH . C 3 HOH A 63 363 21 HOH HOH . C 3 HOH A 64 364 4 HOH HOH . C 3 HOH A 65 365 35 HOH HOH . C 3 HOH A 66 366 18 HOH HOH . C 3 HOH A 67 367 22 HOH HOH . C 3 HOH A 68 368 50 HOH HOH . C 3 HOH A 69 369 64 HOH HOH . C 3 HOH A 70 370 79 HOH HOH . C 3 HOH A 71 371 30 HOH HOH . C 3 HOH A 72 372 68 HOH HOH . C 3 HOH A 73 373 5 HOH HOH . C 3 HOH A 74 374 44 HOH HOH . C 3 HOH A 75 375 97 HOH HOH . C 3 HOH A 76 376 84 HOH HOH . C 3 HOH A 77 377 43 HOH HOH . C 3 HOH A 78 378 31 HOH HOH . C 3 HOH A 79 379 92 HOH HOH . C 3 HOH A 80 380 54 HOH HOH . C 3 HOH A 81 381 78 HOH HOH . C 3 HOH A 82 382 60 HOH HOH . C 3 HOH A 83 383 89 HOH HOH . C 3 HOH A 84 384 85 HOH HOH . C 3 HOH A 85 385 95 HOH HOH . C 3 HOH A 86 386 98 HOH HOH . C 3 HOH A 87 387 52 HOH HOH . C 3 HOH A 88 388 58 HOH HOH . C 3 HOH A 89 389 99 HOH HOH . C 3 HOH A 90 390 80 HOH HOH . C 3 HOH A 91 391 94 HOH HOH . C 3 HOH A 92 392 45 HOH HOH . C 3 HOH A 93 393 76 HOH HOH . C 3 HOH A 94 394 74 HOH HOH . C 3 HOH A 95 395 71 HOH HOH . C 3 HOH A 96 396 81 HOH HOH . C 3 HOH A 97 397 90 HOH HOH . C 3 HOH A 98 398 96 HOH HOH . C 3 HOH A 99 399 56 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 APR . . . B 2 13.441 13.885 10.862 1 26.53 ? N1 APR 201 A 1 HETATM 2 C C2 APR . . . B 2 13.437 13.443 9.61 0.91 29.16 ? C2 APR 201 A 1 HETATM 3 N N3 APR . . . B 2 14.48 13.606 8.798 1 24.13 ? N3 APR 201 A 1 HETATM 4 C C4 APR . . . B 2 15.579 14.23 9.306 1 26.18 ? C4 APR 201 A 1 HETATM 5 C C5 APR . . . B 2 15.632 14.717 10.577 1 26.91 ? C5 APR 201 A 1 HETATM 6 C C6 APR . . . B 2 14.476 14.522 11.371 1 26.94 ? C6 APR 201 A 1 HETATM 7 N N6 APR . . . B 2 14.38 14.95 12.728 1 30.5 ? N6 APR 201 A 1 HETATM 8 N N7 APR . . . B 2 16.857 15.284 10.734 0.85 26.01 ? N7 APR 201 A 1 HETATM 9 C C8 APR . . . B 2 17.544 15.148 9.578 0.75 25.69 ? C8 APR 201 A 1 HETATM 10 N N9 APR . . . B 2 16.77 14.502 8.717 1 22.72 ? N9 APR 201 A 1 HETATM 11 C C1' APR . . . B 2 17.028 14.1 7.356 1 24.79 ? C1' APR 201 A 1 HETATM 12 C C2' APR . . . B 2 18.112 14.614 6.807 0.77 25.37 ? C2' APR 201 A 1 HETATM 13 O O2' APR . . . B 2 17.708 15.879 6.171 0.93 30.44 ? O2' APR 201 A 1 HETATM 14 C C3' APR . . . B 2 18.553 13.597 5.731 1 26.71 ? C3' APR 201 A 1 HETATM 15 O O3' APR . . . B 2 17.83 13.698 4.594 1 29.12 ? O3' APR 201 A 1 HETATM 16 O O4' APR . . . B 2 17.397 12.568 7.466 1 25.37 ? O4' APR 201 A 1 HETATM 17 C C4' APR . . . B 2 18.226 12.276 6.456 0.77 23.98 ? C4' APR 201 A 1 HETATM 18 C C5' APR . . . B 2 19.529 11.707 7.084 1 19.56 ? C5' APR 201 A 1 HETATM 19 O O5' APR . . . B 2 20.305 12.778 7.572 0.8 21.61 ? O5' APR 201 A 1 HETATM 20 P PA APR . . . B 2 21.393 12.46 8.779 1 24.08 ? PA APR 201 A 1 HETATM 21 O O1A APR . . . B 2 20.659 12.047 10.071 0.99 24.88 -1 O1A APR 201 A 1 HETATM 22 O O2A APR . . . B 2 22.358 13.597 8.913 0.95 23.2 ? O2A APR 201 A 1 HETATM 23 O O3A APR . . . B 2 22.06 11.043 8.382 0.91 20.23 ? O3A APR 201 A 1 HETATM 24 P PB APR . . . B 2 23.448 10.733 7.588 0.98 22.8 ? PB APR 201 A 1 HETATM 25 O O1B APR . . . B 2 23.562 11.612 6.35 1 24.2 -1 O1B APR 201 A 1 HETATM 26 O O2B APR . . . B 2 23.379 9.264 7.344 1 22.35 ? O2B APR 201 A 1 HETATM 27 O O5D APR . . . B 2 24.695 11.031 8.598 0.89 22.25 ? O5D APR 201 A 1 HETATM 28 C C5D APR . . . B 2 24.973 10.162 9.683 0.9 23.09 ? C5D APR 201 A 1 HETATM 29 O O4D APR . . . B 2 24.993 12.073 11.221 0.97 19.77 ? O4D APR 201 A 1 HETATM 30 O O1D APR . . . B 2 23.715 12.403 13.021 0.99 22.62 ? O1D APR 201 A 1 HETATM 31 C C1D APR . . . B 2 24.972 12.016 12.522 0.93 20 ? C1D APR 201 A 1 HETATM 32 O O2D APR . . . B 2 25.663 10.214 14.169 1 22.34 ? O2D APR 201 A 1 HETATM 33 C C2D APR . . . B 2 25.266 10.481 12.864 0.87 20.06 ? C2D APR 201 A 1 HETATM 34 O O3D APR . . . B 2 27.605 10.448 12.15 0.95 21.15 ? O3D APR 201 A 1 HETATM 35 C C3D APR . . . B 2 26.228 10.1 11.766 1 22.68 ? C3D APR 201 A 1 HETATM 36 C C4D APR . . . B 2 25.859 10.864 10.676 0.82 19.7 ? C4D APR 201 A 1 HETATM 37 H H2 APR . . . B 2 12.562 12.943 9.235 0.71 27.53 ? H2 APR 201 A 1 HETATM 38 H H61 APR . A . B 2 14.757 14.366 13.473 0.13 29.17 ? H61 APR 201 A 1 HETATM 39 D D61 APR . B . B 2 13.904 14.34 13.381 0.87 27.74 ? D61 APR 201 A 1 HETATM 40 H H62 APR . A . B 2 13.938 15.842 12.956 0.01 32.01 ? H62 APR 201 A 1 HETATM 41 D D62 APR . B . B 2 14.741 15.847 13.043 0.99 34.01 ? D62 APR 201 A 1 HETATM 42 H H8 APR . . . B 2 18.549 15.503 9.391 1 26.19 ? H8 APR 201 A 1 HETATM 43 H "H'1" APR . . . B 2 16.153 14.26 6.724 1 26.29 ? "H'1" APR 201 A 1 HETATM 44 H "H'2" APR . . . B 2 18.892 14.736 7.538 1 23.3 ? "H'2" APR 201 A 1 HETATM 45 H "HO'2" APR . A . B 2 18.129 15.961 5.29 0 30.43 ? "HO'2" APR 201 A 1 HETATM 46 D "DO'2" APR . B . B 2 18.2 15.93 5.328 1 30.43 ? "DO'2" APR 201 A 1 HETATM 47 H "H'3" APR . . . B 2 19.617 13.688 5.512 1 28.15 ? "H'3" APR 201 A 1 HETATM 48 H "HO'3" APR . A . B 2 17.637 14.633 4.379 0 29.83 ? "HO'3" APR 201 A 1 HETATM 49 D "DO'3" APR . B . B 2 17.866 14.643 4.31 1 29.36 ? "DO'3" APR 201 A 1 HETATM 50 H "H'4" APR . . . B 2 17.771 11.553 5.777 1 24.41 ? "H'4" APR 201 A 1 HETATM 51 H "H5'1" APR . . . B 2 19.29 11.034 7.903 1 24.59 ? "H5'1" APR 201 A 1 HETATM 52 H "H5'2" APR . . . B 2 20.113 11.186 6.323 1 23.78 ? "H5'2" APR 201 A 1 HETATM 53 H H5R1 APR . . . B 2 24.051 9.879 10.175 0.86 22.54 ? H5R1 APR 201 A 1 HETATM 54 H H5R2 APR . . . B 2 25.474 9.271 9.313 1 21.46 ? H5R2 APR 201 A 1 HETATM 55 H HOR1 APR . A . B 2 23.073 11.674 12.883 0.12 23.16 ? HOR1 APR 201 A 1 HETATM 56 D DOR1 APR . B . B 2 23.226 11.627 13.37 0.89 23.84 ? DOR1 APR 201 A 1 HETATM 57 H "HR'1" APR . . . B 2 25.756 12.653 12.941 0.66 23.31 ? "HR'1" APR 201 A 1 HETATM 58 H HOR2 APR . A . B 2 26.309 10.895 14.473 0.04 23.06 ? HOR2 APR 201 A 1 HETATM 59 D DOR2 APR . B . B 2 26.584 10.524 14.345 0.96 22.24 ? DOR2 APR 201 A 1 HETATM 60 H "HR'2" APR . . . B 2 24.35 9.934 12.696 1 22.69 ? "HR'2" APR 201 A 1 HETATM 61 H HOR3 APR . A . B 2 27.583 10.889 13.026 0.08 23.39 ? HOR3 APR 201 A 1 HETATM 62 D DOR3 APR . B . B 2 27.551 11.25 12.737 0.92 22.45 ? DOR3 APR 201 A 1 HETATM 63 H "HR'3" APR . . . B 2 26.084 9.047 11.545 1 20.55 ? "HR'3" APR 201 A 1 HETATM 64 H "HR'4" APR . . . B 2 26.731 11.322 10.21 1 23.47 ? "HR'4" APR 201 A 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 217 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 64 #