data_7TXE # _model_server_result.job_id pW4MKEgSnSBUpUJxGGBTCw _model_server_result.datetime_utc '2024-11-26 20:52:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7txe # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 7TXE # _exptl.entry_id 7TXE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 618.503 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'HEME C' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7TXE _cell.length_a 54.44 _cell.length_b 71.994 _cell.length_c 78.409 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7TXE _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 38 A CYS 38 1_555 C CAB HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.902 ? covale ? covale2 A SG CYS 41 A CYS 41 1_555 C CAC HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.97 ? covale ? covale3 B SG CYS 38 B CYS 38 1_555 D CAB HEC . B HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.87 ? covale ? covale4 B SG CYS 41 B CYS 41 1_555 D CAC HEC . B HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.975 ? metalc ? metalc1 A NE2 HIS 42 A HIS 42 1_555 C FE HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.853 ? metalc ? metalc2 C FE HEC . A HEC 201 1_555 E O HOH . A HOH 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? metalc ? metalc3 B NE2 HIS 42 B HIS 42 1_555 D FE HEC . B HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.918 ? metalc ? metalc4 D FE HEC . B HEC 201 1_555 F O HOH . B HOH 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? # _chem_comp.formula 'C34 H34 Fe N4 O4' _chem_comp.formula_weight 618.503 _chem_comp.id HEC _chem_comp.mon_nstd_flag . _chem_comp.name 'HEME C' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE NA HEC sing 129 n n FE NB HEC sing 130 n n FE NC HEC sing 131 n n FE ND HEC sing 132 n n CHA C1A HEC doub 133 n n CHA C4D HEC sing 134 n n CHA HHA HEC sing 135 n n CHB C4A HEC doub 136 n n CHB C1B HEC sing 137 n n CHB HHB HEC sing 138 n n CHC C4B HEC doub 139 n n CHC C1C HEC sing 140 n n CHC HHC HEC sing 141 n n CHD C4C HEC doub 142 n n CHD C1D HEC sing 143 n n CHD HHD HEC sing 144 n n NA C1A HEC sing 145 n y NA C4A HEC sing 146 n y C1A C2A HEC sing 147 n y C2A C3A HEC doub 148 n y C2A CAA HEC sing 149 n n C3A C4A HEC sing 150 n y C3A CMA HEC sing 151 n n CMA HMA1 HEC sing 152 n n CMA HMA2 HEC sing 153 n n CMA HMA3 HEC sing 154 n n CAA CBA HEC sing 155 n n CAA HAA1 HEC sing 156 n n CAA HAA2 HEC sing 157 n n CBA CGA HEC sing 158 n n CBA HBA1 HEC sing 159 n n CBA HBA2 HEC sing 160 n n CGA O1A HEC doub 161 n n CGA O2A HEC sing 162 n n O2A H2A HEC sing 163 n n NB C1B HEC sing 164 n y NB C4B HEC sing 165 n y C1B C2B HEC doub 166 n y C2B C3B HEC sing 167 n y C2B CMB HEC sing 168 n n C3B C4B HEC sing 169 n y C3B CAB HEC doub 170 e n CMB HMB1 HEC sing 171 n n CMB HMB2 HEC sing 172 n n CMB HMB3 HEC sing 173 n n CAB CBB HEC sing 174 n n CAB HAB HEC sing 175 n n CBB HBB1 HEC sing 176 n n CBB HBB2 HEC sing 177 n n CBB HBB3 HEC sing 178 n n NC C1C HEC sing 179 n y NC C4C HEC sing 180 n y C1C C2C HEC doub 181 n y C2C C3C HEC sing 182 n y C2C CMC HEC sing 183 n n C3C C4C HEC sing 184 n y C3C CAC HEC doub 185 e n CMC HMC1 HEC sing 186 n n CMC HMC2 HEC sing 187 n n CMC HMC3 HEC sing 188 n n CAC CBC HEC sing 189 n n CAC HAC HEC sing 190 n n CBC HBC1 HEC sing 191 n n CBC HBC2 HEC sing 192 n n CBC HBC3 HEC sing 193 n n ND C1D HEC sing 194 n y ND C4D HEC sing 195 n y C1D C2D HEC doub 196 n y C2D C3D HEC sing 197 n y C2D CMD HEC sing 198 n n C3D C4D HEC doub 199 n y C3D CAD HEC sing 200 n n CMD HMD1 HEC sing 201 n n CMD HMD2 HEC sing 202 n n CMD HMD3 HEC sing 203 n n CAD CBD HEC sing 204 n n CAD HAD1 HEC sing 205 n n CAD HAD2 HEC sing 206 n n CBD CGD HEC sing 207 n n CBD HBD1 HEC sing 208 n n CBD HBD2 HEC sing 209 n n CGD O1D HEC doub 210 n n CGD O2D HEC sing 211 n n O2D H2D HEC sing 212 n n # _atom_sites.entry_id 7TXE _atom_sites.fract_transf_matrix[1][1] 0.018369 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01389 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012754 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEC A 1 201 231 HEC HEM . D 2 HEC B 1 201 231 HEC HEM . E 3 HOH A 1 301 29 HOH HOH . E 3 HOH A 2 302 27 HOH HOH . E 3 HOH A 3 303 20 HOH HOH . E 3 HOH A 4 304 4 HOH HOH . E 3 HOH A 5 305 21 HOH HOH . E 3 HOH A 6 306 45 HOH HOH . E 3 HOH A 7 307 35 HOH HOH . E 3 HOH A 8 308 46 HOH HOH . E 3 HOH A 9 309 31 HOH HOH . E 3 HOH A 10 310 58 HOH HOH . E 3 HOH A 11 311 1 HOH HOH . E 3 HOH A 12 312 13 HOH HOH . E 3 HOH A 13 313 25 HOH HOH . E 3 HOH A 14 314 15 HOH HOH . E 3 HOH A 15 315 8 HOH HOH . E 3 HOH A 16 316 17 HOH HOH . E 3 HOH A 17 317 50 HOH HOH . E 3 HOH A 18 318 54 HOH HOH . E 3 HOH A 19 319 57 HOH HOH . E 3 HOH A 20 320 26 HOH HOH . E 3 HOH A 21 321 48 HOH HOH . F 3 HOH B 1 301 44 HOH HOH . F 3 HOH B 2 302 24 HOH HOH . F 3 HOH B 3 303 5 HOH HOH . F 3 HOH B 4 304 11 HOH HOH . F 3 HOH B 5 305 47 HOH HOH . F 3 HOH B 6 306 12 HOH HOH . F 3 HOH B 7 307 7 HOH HOH . F 3 HOH B 8 308 10 HOH HOH . F 3 HOH B 9 309 2 HOH HOH . F 3 HOH B 10 310 6 HOH HOH . F 3 HOH B 11 311 3 HOH HOH . F 3 HOH B 12 312 23 HOH HOH . F 3 HOH B 13 313 16 HOH HOH . F 3 HOH B 14 314 53 HOH HOH . F 3 HOH B 15 315 39 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE HEC . . . C 2 -19.978 -8.258 17.398 1 24.27 ? FE HEC 201 A 1 HETATM 2 C CHA HEC . . . C 2 -16.893 -8.84 15.932 1 28.08 ? CHA HEC 201 A 1 HETATM 3 C CHB HEC . . . C 2 -20.678 -11.629 17.114 1 24.48 ? CHB HEC 201 A 1 HETATM 4 C CHC HEC . . . C 2 -22.736 -7.841 19.301 1 31.55 ? CHC HEC 201 A 1 HETATM 5 C CHD HEC . . . C 2 -19.37 -4.936 17.379 1 28.61 ? CHD HEC 201 A 1 HETATM 6 N NA HEC . . . C 2 -18.934 -9.946 16.705 1 26.29 ? NA HEC 201 A 1 HETATM 7 C C1A HEC . . . C 2 -17.721 -9.939 16.061 1 30.16 ? C1A HEC 201 A 1 HETATM 8 C C2A HEC . . . C 2 -17.479 -11.272 15.551 1 25.75 ? C2A HEC 201 A 1 HETATM 9 C C3A HEC . . . C 2 -18.517 -12.036 15.882 1 24.18 ? C3A HEC 201 A 1 HETATM 10 C C4A HEC . . . C 2 -19.46 -11.222 16.61 1 29.35 ? C4A HEC 201 A 1 HETATM 11 C CMA HEC . . . C 2 -18.674 -13.526 15.539 1 24.4 ? CMA HEC 201 A 1 HETATM 12 C CAA HEC . . . C 2 -16.225 -11.74 14.764 1 26.47 ? CAA HEC 201 A 1 HETATM 13 C CBA HEC . . . C 2 -16.599 -11.861 13.288 1 24.43 ? CBA HEC 201 A 1 HETATM 14 C CGA HEC . . . C 2 -15.404 -12.288 12.47 1 28.99 ? CGA HEC 201 A 1 HETATM 15 O O1A HEC . . . C 2 -15.53 -12.333 11.218 1 33.41 ? O1A HEC 201 A 1 HETATM 16 O O2A HEC . . . C 2 -14.334 -12.576 13.067 1 24.6 ? O2A HEC 201 A 1 HETATM 17 N NB HEC . . . C 2 -21.45 -9.504 18.053 1 28.74 ? NB HEC 201 A 1 HETATM 18 C C1B HEC . . . C 2 -21.533 -10.867 17.872 1 27.85 ? C1B HEC 201 A 1 HETATM 19 C C2B HEC . . . C 2 -22.682 -11.351 18.622 1 31.89 ? C2B HEC 201 A 1 HETATM 20 C C3B HEC . . . C 2 -23.265 -10.298 19.208 1 31.13 ? C3B HEC 201 A 1 HETATM 21 C C4B HEC . . . C 2 -22.485 -9.12 18.877 1 29.77 ? C4B HEC 201 A 1 HETATM 22 C CMB HEC . . . C 2 -23.146 -12.812 18.676 1 29.07 ? CMB HEC 201 A 1 HETATM 23 C CAB HEC . . . C 2 -24.488 -10.285 20.148 1 25.93 ? CAB HEC 201 A 1 HETATM 24 C CBB HEC . . . C 2 -24.745 -11.324 20.94 1 34.28 ? CBB HEC 201 A 1 HETATM 25 N NC HEC . . . C 2 -20.873 -6.689 18.194 1 29.67 ? NC HEC 201 A 1 HETATM 26 C C1C HEC . . . C 2 -22.027 -6.718 18.946 1 33.64 ? C1C HEC 201 A 1 HETATM 27 C C2C HEC . . . C 2 -22.362 -5.358 19.311 1 32.79 ? C2C HEC 201 A 1 HETATM 28 C C3C HEC . . . C 2 -21.435 -4.542 18.772 1 31.46 ? C3C HEC 201 A 1 HETATM 29 C C4C HEC . . . C 2 -20.476 -5.373 18.069 1 26.78 ? C4C HEC 201 A 1 HETATM 30 C CMC HEC . . . C 2 -23.6 -4.992 20.153 1 26.41 ? CMC HEC 201 A 1 HETATM 31 C CAC HEC . . . C 2 -21.322 -3 18.876 1 26.21 ? CAC HEC 201 A 1 HETATM 32 C CBC HEC . . . C 2 -21.84 -2.348 19.921 1 32.44 ? CBC HEC 201 A 1 HETATM 33 N ND HEC . . . C 2 -18.366 -7.098 16.854 1 31.62 ? ND HEC 201 A 1 HETATM 34 C C1D HEC . . . C 2 -18.434 -5.724 16.766 1 27.46 ? C1D HEC 201 A 1 HETATM 35 C C2D HEC . . . C 2 -17.336 -5.277 15.929 1 33.7 ? C2D HEC 201 A 1 HETATM 36 C C3D HEC . . . C 2 -16.649 -6.353 15.531 1 26.94 ? C3D HEC 201 A 1 HETATM 37 C C4D HEC . . . C 2 -17.285 -7.527 16.102 1 28.59 ? C4D HEC 201 A 1 HETATM 38 C CMD HEC . . . C 2 -17.022 -3.813 15.563 1 28.4 ? CMD HEC 201 A 1 HETATM 39 C CAD HEC . . . C 2 -15.407 -6.358 14.625 1 24.57 ? CAD HEC 201 A 1 HETATM 40 C CBD HEC . . . C 2 -14.166 -6.124 15.48 1 29.93 ? CBD HEC 201 A 1 HETATM 41 C CGD HEC . . . C 2 -13.887 -7.307 16.358 1 34.92 ? CGD HEC 201 A 1 HETATM 42 O O1D HEC . . . C 2 -13.807 -8.455 15.823 1 31.46 ? O1D HEC 201 A 1 HETATM 43 O O2D HEC . . . C 2 -13.725 -7.1 17.594 1 36.73 ? O2D HEC 201 A 1 HETATM 44 H HHA HEC . . . C 2 -15.955 -9.006 15.701 1 33.69 ? HHA HEC 201 A 1 HETATM 45 H HHB HEC . . . C 2 -20.96 -12.545 16.912 1 29.38 ? HHB HEC 201 A 1 HETATM 46 H HHC HEC . . . C 2 -23.491 -7.715 19.913 1 37.85 ? HHC HEC 201 A 1 HETATM 47 H HHD HEC . . . C 2 -19.239 -3.967 17.321 1 34.33 ? HHD HEC 201 A 1 HETATM 48 H HMA1 HEC . . . C 2 -17.995 -14.045 16.018 1 29.28 ? HMA1 HEC 201 A 1 HETATM 49 H HMA2 HEC . . . C 2 -19.566 -13.831 15.806 1 29.28 ? HMA2 HEC 201 A 1 HETATM 50 H HMA3 HEC . . . C 2 -18.561 -13.653 14.574 1 29.28 ? HMA3 HEC 201 A 1 HETATM 51 H HAA1 HEC . . . C 2 -15.93 -12.601 15.099 1 31.77 ? HAA1 HEC 201 A 1 HETATM 52 H HAA2 HEC . . . C 2 -15.511 -11.091 14.869 1 31.77 ? HAA2 HEC 201 A 1 HETATM 53 H HBA1 HEC . . . C 2 -16.914 -11.001 12.967 1 29.31 ? HBA1 HEC 201 A 1 HETATM 54 H HBA2 HEC . . . C 2 -17.303 -12.521 13.19 1 29.31 ? HBA2 HEC 201 A 1 HETATM 55 H HMB1 HEC . . . C 2 -23.116 -13.194 17.784 1 34.89 ? HMB1 HEC 201 A 1 HETATM 56 H HMB2 HEC . . . C 2 -22.562 -13.316 19.263 1 34.89 ? HMB2 HEC 201 A 1 HETATM 57 H HMB3 HEC . . . C 2 -24.055 -12.85 19.013 1 34.89 ? HMB3 HEC 201 A 1 HETATM 58 H HAB HEC . . . C 2 -25.069 -9.521 20.163 1 31.11 ? HAB HEC 201 A 1 HETATM 59 H HBB1 HEC . . . C 2 -25.517 -11.307 21.528 1 41.13 ? HBB1 HEC 201 A 1 HETATM 60 H HBB2 HEC . . . C 2 -24.161 -12.099 20.929 1 41.13 ? HBB2 HEC 201 A 1 HETATM 61 H HMC1 HEC . . . C 2 -24.347 -5.553 19.891 1 31.7 ? HMC1 HEC 201 A 1 HETATM 62 H HMC2 HEC . . . C 2 -23.404 -5.132 21.093 1 31.7 ? HMC2 HEC 201 A 1 HETATM 63 H HMC3 HEC . . . C 2 -23.828 -4.061 20.006 1 31.7 ? HMC3 HEC 201 A 1 HETATM 64 H HAC HEC . . . C 2 -20.874 -2.509 18.183 1 31.45 ? HAC HEC 201 A 1 HETATM 65 H HBC1 HEC . . . C 2 -21.763 -1.382 19.976 1 38.92 ? HBC1 HEC 201 A 1 HETATM 66 H HBC2 HEC . . . C 2 -22.292 -2.84 20.624 1 38.92 ? HBC2 HEC 201 A 1 HETATM 67 H HMD1 HEC . . . C 2 -17.772 -3.433 15.06 1 34.08 ? HMD1 HEC 201 A 1 HETATM 68 H HMD2 HEC . . . C 2 -16.883 -3.294 16.383 1 34.08 ? HMD2 HEC 201 A 1 HETATM 69 H HMD3 HEC . . . C 2 -16.211 -3.779 15.014 1 34.08 ? HMD3 HEC 201 A 1 HETATM 70 H HAD1 HEC . . . C 2 -15.336 -7.215 14.176 1 29.49 ? HAD1 HEC 201 A 1 HETATM 71 H HAD2 HEC . . . C 2 -15.484 -5.653 13.964 1 29.49 ? HAD2 HEC 201 A 1 HETATM 72 H HBD1 HEC . . . C 2 -13.404 -5.975 14.899 1 35.92 ? HBD1 HEC 201 A 1 HETATM 73 H HBD2 HEC . . . C 2 -14.307 -5.343 16.037 1 35.92 ? HBD2 HEC 201 A 1 # _model_server_stats.io_time_ms 31 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 334 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 73 #