data_7TXL # _model_server_result.job_id Jk3rlK2T2IAxv13Mfg7cSQ _model_server_result.datetime_utc '2025-01-12 08:17:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7txl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":601}' # _entry.id 7TXL # _exptl.entry_id 7TXL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 230.307 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description trimethyl-[(2S)-1-oxidanyl-1-oxidanylidene-3-(2-sulfanylidene-1,3-dihydroimidazol-4-yl)propan-2-yl]azanium _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7TXL _cell.length_a 119.868 _cell.length_b 128.743 _cell.length_c 207.54 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7TXL _symmetry.cell_setting ? _symmetry.Int_Tables_number 22 _symmetry.space_group_name_Hall 'F 2 2' _symmetry.space_group_name_H-M 'F 2 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,F 1 1 B,E,G 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C9 H16 N3 O2 S 1' _chem_comp.formula_weight 230.307 _chem_comp.id LW8 _chem_comp.mon_nstd_flag . _chem_comp.name trimethyl-[(2S)-1-oxidanyl-1-oxidanylidene-3-(2-sulfanylidene-1,3-dihydroimidazol-4-yl)propan-2-yl]azanium _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C12 C10 LW8 doub 190 n n C12 N13 LW8 sing 191 n n C09 C10 LW8 sing 192 n n C09 C04 LW8 sing 193 n n C08 N05 LW8 sing 194 n n C10 N11 LW8 sing 195 n n N13 C14 LW8 sing 196 n n O03 C02 LW8 doub 197 n n N11 C14 LW8 sing 198 n n C14 S15 LW8 doub 199 n n N05 C04 LW8 sing 200 n n N05 C06 LW8 sing 201 n n N05 C07 LW8 sing 202 n n C04 C02 LW8 sing 203 n n C02 O01 LW8 sing 204 n n O01 H1 LW8 sing 205 n n C04 H2 LW8 sing 206 n n C06 H3 LW8 sing 207 n n C06 H4 LW8 sing 208 n n C06 H5 LW8 sing 209 n n C07 H6 LW8 sing 210 n n C07 H7 LW8 sing 211 n n C07 H8 LW8 sing 212 n n C08 H9 LW8 sing 213 n n C08 H10 LW8 sing 214 n n C08 H11 LW8 sing 215 n n C09 H12 LW8 sing 216 n n C09 H13 LW8 sing 217 n n C12 H14 LW8 sing 218 n n N11 H15 LW8 sing 219 n n N13 H16 LW8 sing 220 n n # _atom_sites.entry_id 7TXL _atom_sites.fract_transf_matrix[1][1] 0.008343 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007767 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004818 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 LW8 A 1 601 530 LW8 LIG . D 3 EDO A 1 602 630 EDO EDO . E 2 LW8 B 1 601 530 LW8 LIG . F 4 HOH A 1 701 129 HOH HOH . F 4 HOH A 2 702 51 HOH HOH . F 4 HOH A 3 703 116 HOH HOH . F 4 HOH A 4 704 135 HOH HOH . F 4 HOH A 5 705 35 HOH HOH . F 4 HOH A 6 706 66 HOH HOH . F 4 HOH A 7 707 55 HOH HOH . F 4 HOH A 8 708 12 HOH HOH . F 4 HOH A 9 709 47 HOH HOH . F 4 HOH A 10 710 17 HOH HOH . F 4 HOH A 11 711 19 HOH HOH . F 4 HOH A 12 712 31 HOH HOH . F 4 HOH A 13 713 89 HOH HOH . F 4 HOH A 14 714 99 HOH HOH . F 4 HOH A 15 715 7 HOH HOH . F 4 HOH A 16 716 4 HOH HOH . F 4 HOH A 17 717 6 HOH HOH . F 4 HOH A 18 718 46 HOH HOH . F 4 HOH A 19 719 32 HOH HOH . F 4 HOH A 20 720 94 HOH HOH . F 4 HOH A 21 721 45 HOH HOH . F 4 HOH A 22 722 91 HOH HOH . F 4 HOH A 23 723 13 HOH HOH . F 4 HOH A 24 724 52 HOH HOH . F 4 HOH A 25 725 77 HOH HOH . F 4 HOH A 26 726 75 HOH HOH . F 4 HOH A 27 727 5 HOH HOH . F 4 HOH A 28 728 21 HOH HOH . F 4 HOH A 29 729 11 HOH HOH . F 4 HOH A 30 730 128 HOH HOH . F 4 HOH A 31 731 23 HOH HOH . F 4 HOH A 32 732 15 HOH HOH . F 4 HOH A 33 733 37 HOH HOH . F 4 HOH A 34 734 57 HOH HOH . F 4 HOH A 35 735 56 HOH HOH . F 4 HOH A 36 736 118 HOH HOH . F 4 HOH A 37 737 131 HOH HOH . F 4 HOH A 38 738 101 HOH HOH . F 4 HOH A 39 739 60 HOH HOH . F 4 HOH A 40 740 63 HOH HOH . F 4 HOH A 41 741 110 HOH HOH . F 4 HOH A 42 742 112 HOH HOH . F 4 HOH A 43 743 70 HOH HOH . F 4 HOH A 44 744 61 HOH HOH . F 4 HOH A 45 745 26 HOH HOH . F 4 HOH A 46 746 3 HOH HOH . F 4 HOH A 47 747 141 HOH HOH . F 4 HOH A 48 748 36 HOH HOH . F 4 HOH A 49 749 48 HOH HOH . F 4 HOH A 50 750 126 HOH HOH . F 4 HOH A 51 751 42 HOH HOH . F 4 HOH A 52 752 58 HOH HOH . F 4 HOH A 53 753 39 HOH HOH . F 4 HOH A 54 754 49 HOH HOH . F 4 HOH A 55 755 29 HOH HOH . F 4 HOH A 56 756 85 HOH HOH . F 4 HOH A 57 757 95 HOH HOH . F 4 HOH A 58 758 103 HOH HOH . F 4 HOH A 59 759 115 HOH HOH . F 4 HOH A 60 760 125 HOH HOH . F 4 HOH A 61 761 102 HOH HOH . F 4 HOH A 62 762 133 HOH HOH . F 4 HOH A 63 763 69 HOH HOH . F 4 HOH A 64 764 67 HOH HOH . F 4 HOH A 65 765 130 HOH HOH . F 4 HOH A 66 766 40 HOH HOH . F 4 HOH A 67 767 142 HOH HOH . F 4 HOH A 68 768 68 HOH HOH . F 4 HOH A 69 769 86 HOH HOH . F 4 HOH A 70 770 43 HOH HOH . F 4 HOH A 71 771 8 HOH HOH . F 4 HOH A 72 772 104 HOH HOH . F 4 HOH A 73 773 96 HOH HOH . F 4 HOH A 74 774 140 HOH HOH . F 4 HOH A 75 775 64 HOH HOH . G 4 HOH B 1 701 106 HOH HOH . G 4 HOH B 2 702 132 HOH HOH . G 4 HOH B 3 703 18 HOH HOH . G 4 HOH B 4 704 111 HOH HOH . G 4 HOH B 5 705 2 HOH HOH . G 4 HOH B 6 706 28 HOH HOH . G 4 HOH B 7 707 105 HOH HOH . G 4 HOH B 8 708 123 HOH HOH . G 4 HOH B 9 709 93 HOH HOH . G 4 HOH B 10 710 80 HOH HOH . G 4 HOH B 11 711 121 HOH HOH . G 4 HOH B 12 712 138 HOH HOH . G 4 HOH B 13 713 113 HOH HOH . G 4 HOH B 14 714 20 HOH HOH . G 4 HOH B 15 715 9 HOH HOH . G 4 HOH B 16 716 90 HOH HOH . G 4 HOH B 17 717 10 HOH HOH . G 4 HOH B 18 718 108 HOH HOH . G 4 HOH B 19 719 98 HOH HOH . G 4 HOH B 20 720 44 HOH HOH . G 4 HOH B 21 721 16 HOH HOH . G 4 HOH B 22 722 117 HOH HOH . G 4 HOH B 23 723 14 HOH HOH . G 4 HOH B 24 724 71 HOH HOH . G 4 HOH B 25 725 33 HOH HOH . G 4 HOH B 26 726 59 HOH HOH . G 4 HOH B 27 727 1 HOH HOH . G 4 HOH B 28 728 134 HOH HOH . G 4 HOH B 29 729 30 HOH HOH . G 4 HOH B 30 730 74 HOH HOH . G 4 HOH B 31 731 79 HOH HOH . G 4 HOH B 32 732 53 HOH HOH . G 4 HOH B 33 733 25 HOH HOH . G 4 HOH B 34 734 27 HOH HOH . G 4 HOH B 35 735 41 HOH HOH . G 4 HOH B 36 736 65 HOH HOH . G 4 HOH B 37 737 76 HOH HOH . G 4 HOH B 38 738 54 HOH HOH . G 4 HOH B 39 739 22 HOH HOH . G 4 HOH B 40 740 83 HOH HOH . G 4 HOH B 41 741 34 HOH HOH . G 4 HOH B 42 742 38 HOH HOH . G 4 HOH B 43 743 73 HOH HOH . G 4 HOH B 44 744 139 HOH HOH . G 4 HOH B 45 745 50 HOH HOH . G 4 HOH B 46 746 124 HOH HOH . G 4 HOH B 47 747 100 HOH HOH . G 4 HOH B 48 748 81 HOH HOH . G 4 HOH B 49 749 78 HOH HOH . G 4 HOH B 50 750 24 HOH HOH . G 4 HOH B 51 751 62 HOH HOH . G 4 HOH B 52 752 88 HOH HOH . G 4 HOH B 53 753 84 HOH HOH . G 4 HOH B 54 754 127 HOH HOH . G 4 HOH B 55 755 137 HOH HOH . G 4 HOH B 56 756 136 HOH HOH . G 4 HOH B 57 757 97 HOH HOH . G 4 HOH B 58 758 107 HOH HOH . G 4 HOH B 59 759 114 HOH HOH . G 4 HOH B 60 760 122 HOH HOH . G 4 HOH B 61 761 72 HOH HOH . G 4 HOH B 62 762 120 HOH HOH . G 4 HOH B 63 763 82 HOH HOH . G 4 HOH B 64 764 87 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O01 LW8 . . . E 2 13.358 60.363 66.387 1 39.48 ? O01 LW8 601 B 1 HETATM 2 C C02 LW8 . . . E 2 13.116 61.24 65.523 1 35.36 ? C02 LW8 601 B 1 HETATM 3 O O03 LW8 . . . E 2 12.784 60.905 64.356 1 42.95 ? O03 LW8 601 B 1 HETATM 4 C C04 LW8 . . . E 2 13.279 62.744 65.881 1 43.03 ? C04 LW8 601 B 1 HETATM 5 N N05 LW8 . . . E 2 14.591 63.315 65.453 1 47.63 ? N05 LW8 601 B 1 HETATM 6 C C06 LW8 . . . E 2 15.66 62.449 65.931 1 41.2 ? C06 LW8 601 B 1 HETATM 7 C C07 LW8 . . . E 2 14.811 63.441 64.016 1 39.16 ? C07 LW8 601 B 1 HETATM 8 C C08 LW8 . . . E 2 14.807 64.64 66.033 1 38.16 ? C08 LW8 601 B 1 HETATM 9 C C09 LW8 . . . E 2 12.016 63.499 65.391 1 38.26 ? C09 LW8 601 B 1 HETATM 10 C C10 LW8 . . . E 2 10.619 62.936 65.671 1 35.08 ? C10 LW8 601 B 1 HETATM 11 N N11 LW8 . . . E 2 9.557 63.189 64.921 1 34.78 ? N11 LW8 601 B 1 HETATM 12 C C14 LW8 . . . E 2 8.51 62.565 65.428 1 34.09 ? C14 LW8 601 B 1 HETATM 13 S S15 LW8 . . . E 2 7.029 62.591 64.838 1 41.33 ? S15 LW8 601 B 1 HETATM 14 N N13 LW8 . . . E 2 8.884 61.911 66.513 1 33.47 ? N13 LW8 601 B 1 HETATM 15 C C12 LW8 . . . E 2 10.175 62.124 66.705 1 30.38 ? C12 LW8 601 B 1 HETATM 16 H H2 LW8 . . . E 2 13.364 62.884 66.951 1 51.73 ? H2 LW8 601 B 1 HETATM 17 H H3 LW8 . . . E 2 15.835 61.657 65.208 1 49.53 ? H3 LW8 601 B 1 HETATM 18 H H4 LW8 . . . E 2 15.374 62.012 66.883 1 49.53 ? H4 LW8 601 B 1 HETATM 19 H H5 LW8 . . . E 2 16.568 63.03 66.057 1 49.53 ? H5 LW8 601 B 1 HETATM 20 H H6 LW8 . . . E 2 14.487 62.531 63.519 1 47.1 ? H6 LW8 601 B 1 HETATM 21 H H7 LW8 . . . E 2 15.868 63.602 63.825 1 47.1 ? H7 LW8 601 B 1 HETATM 22 H H8 LW8 . . . E 2 14.242 64.284 63.635 1 47.1 ? H8 LW8 601 B 1 HETATM 23 H H9 LW8 . . . E 2 15.774 65.02 65.718 1 45.89 ? H9 LW8 601 B 1 HETATM 24 H H10 LW8 . . . E 2 14.78 64.57 67.117 1 45.89 ? H10 LW8 601 B 1 HETATM 25 H H11 LW8 . . . E 2 14.025 65.315 65.695 1 45.89 ? H11 LW8 601 B 1 HETATM 26 H H12 LW8 . . . E 2 12.051 64.488 65.836 1 46.01 ? H12 LW8 601 B 1 HETATM 27 H H13 LW8 . . . E 2 12.106 63.594 64.314 1 46.01 ? H13 LW8 601 B 1 HETATM 28 H H14 LW8 . . . E 2 10.775 61.737 67.52 1 36.56 ? H14 LW8 601 B 1 HETATM 29 H H15 LW8 . . . E 2 9.55 63.763 64.101 1 41.84 ? H15 LW8 601 B 1 HETATM 30 H H16 LW8 . . . E 2 8.291 61.35 67.092 1 40.26 ? H16 LW8 601 B 1 # _model_server_stats.io_time_ms 26 _model_server_stats.parse_time_ms 32 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 30 #