data_7TXZ # _model_server_result.job_id LP7RgE2L9LJ6GVIlNehCcw _model_server_result.datetime_utc '2024-10-20 20:41:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7txz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"V","auth_seq_id":701}' # _entry.id 7TXZ # _exptl.entry_id 7TXZ _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 221.208 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id V _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 4 oligosaccharide 5 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 5 2 1 NAG NAG C1 O1 . O4 HO4 . sing 3 ? 5 3 1 FUC NAG C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 4 n I NAG 1 G 1 NAG A 1001 NAG 4 n I NAG 2 G 2 NAG A 1002 NAG 4 n J NAG 1 I 1 NAG A 1008 NAG 4 n J NAG 2 I 2 NAG A 1009 NAG 5 n K NAG 1 J 1 NAG A 1013 NAG 5 n K NAG 2 J 2 NAG A 1014 NAG 5 n K FUC 3 J 3 FUC A 1012 FUC 4 n L NAG 1 K 1 NAG A 1010 NAG 4 n L NAG 2 K 2 NAG A 1011 NAG 4 n M NAG 1 M 1 NAG A 1015 NAG 4 n M NAG 2 M 2 NAG A 1016 NAG 4 n N NAG 1 N 1 NAG B 1001 NAG 4 n N NAG 2 N 2 NAG B 1002 NAG 4 n O NAG 1 O 1 NAG B 1006 NAG 4 n O NAG 2 O 2 NAG B 1007 NAG 4 n P NAG 1 P 1 NAG B 1008 NAG 4 n P NAG 2 P 2 NAG B 1009 NAG 4 n Q NAG 1 Q 1 NAG B 1010 NAG 4 n Q NAG 2 Q 2 NAG B 1011 NAG 5 n R NAG 1 R 1 NAG B 1013 NAG 5 n R NAG 2 R 2 NAG B 1014 NAG 5 n R FUC 3 R 3 FUC B 1012 FUC 4 n S NAG 1 S 1 NAG B 1015 NAG 4 n S NAG 2 S 2 NAG B 1016 NAG 4 n T NAG 1 T 1 NAG D 1013 NAG 4 n T NAG 2 T 2 NAG D 1014 NAG 4 n U NAG 1 U 1 NAG C 1013 NAG 4 n U NAG 2 U 2 NAG C 1014 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 83 A CYS 146 1_555 H SG CYS 83 C CYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 A SG CYS 95 A CYS 158 1_555 G SG CYS 99 D CYS 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf3 A SG CYS 99 A CYS 162 1_555 G SG CYS 95 D CYS 158 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf4 A SG CYS 126 A CYS 189 1_555 A SG CYS 538 A CYS 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? disulf ? disulf5 A SG CYS 153 A CYS 216 1_555 A SG CYS 177 A CYS 240 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? disulf ? disulf6 A SG CYS 219 A CYS 282 1_555 A SG CYS 232 A CYS 295 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf7 A SG CYS 319 A CYS 382 1_555 A SG CYS 332 A CYS 395 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf8 A SG CYS 324 A CYS 387 1_555 A SG CYS 436 A CYS 499 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf9 A SG CYS 430 A CYS 493 1_555 A SG CYS 440 A CYS 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf10 A SG CYS 502 A CYS 565 1_555 A SG CYS 511 A CYS 574 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf11 B SG CYS 83 B CYS 146 1_555 G SG CYS 83 D CYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf12 B SG CYS 95 B CYS 158 1_555 H SG CYS 99 C CYS 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? disulf ? disulf13 B SG CYS 99 B CYS 162 1_555 H SG CYS 95 C CYS 158 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf14 B SG CYS 126 B CYS 189 1_555 B SG CYS 538 B CYS 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf15 B SG CYS 153 B CYS 216 1_555 B SG CYS 177 B CYS 240 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf16 B SG CYS 219 B CYS 282 1_555 B SG CYS 232 B CYS 295 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf17 B SG CYS 319 B CYS 382 1_555 B SG CYS 332 B CYS 395 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf18 B SG CYS 324 B CYS 387 1_555 B SG CYS 436 B CYS 499 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? disulf ? disulf19 B SG CYS 430 B CYS 493 1_555 B SG CYS 440 B CYS 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? disulf ? disulf20 B SG CYS 502 B CYS 565 1_555 B SG CYS 511 B CYS 574 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf21 C SG CYS 22 E CYS 22 1_555 C SG CYS 98 E CYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf22 D SG CYS 23 F CYS 23 1_555 D SG CYS 92 F CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf23 E SG CYS 22 H CYS 22 1_555 E SG CYS 98 H CYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf24 F SG CYS 23 L CYS 23 1_555 F SG CYS 92 L CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? covale ? covale1 A ND2 ASN 96 A ASN 159 1_555 M C1 NAG . M NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.501 ? covale ? covale2 A ND2 ASN 243 A ASN 306 1_555 I C1 NAG . G NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.5 ? covale ? covale3 A ND2 ASN 315 A ASN 378 1_555 V C1 NAG . A NAG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.507 ? covale ? covale4 A ND2 ASN 354 A ASN 417 1_555 J C1 NAG . I NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.494 ? covale ? covale5 A ND2 ASN 418 A ASN 481 1_555 L C1 NAG . K NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.499 ? covale ? covale6 A ND2 ASN 466 A ASN 529 1_555 K C1 NAG . J NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.506 ? covale ? covale7 B ND2 ASN 96 B ASN 159 1_555 S C1 NAG . S NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.496 ? covale ? covale8 B ND2 ASN 243 B ASN 306 1_555 N C1 NAG . N NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.51 ? covale ? covale9 B ND2 ASN 315 B ASN 378 1_555 O C1 NAG . O NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.503 ? covale ? covale10 B ND2 ASN 354 B ASN 417 1_555 P C1 NAG . P NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.503 ? covale ? covale11 B ND2 ASN 418 B ASN 481 1_555 Q C1 NAG . Q NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.499 ? covale ? covale12 B ND2 ASN 466 B ASN 529 1_555 R C1 NAG . R NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.516 ? covale ? covale13 G ND2 ASN 96 D ASN 159 1_555 T C1 NAG . T NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.496 ? covale ? covale14 H ND2 ASN 96 C ASN 159 1_555 U C1 NAG . U NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.513 ? covale ? covale15 I O4 NAG . G NAG 1 1_555 I C1 NAG . G NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.498 ? covale ? covale16 J O4 NAG . I NAG 1 1_555 J C1 NAG . I NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.506 ? covale ? covale17 K O4 NAG . J NAG 1 1_555 K C1 NAG . J NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.505 ? covale ? covale18 K O6 NAG . J NAG 1 1_555 K C1 FUC . J FUC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.488 ? covale ? covale19 L O4 NAG . K NAG 1 1_555 L C1 NAG . K NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.501 ? covale ? covale20 M O4 NAG . M NAG 1 1_555 M C1 NAG . M NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.516 ? covale ? covale21 N O4 NAG . N NAG 1 1_555 N C1 NAG . N NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.504 ? covale ? covale22 O O4 NAG . O NAG 1 1_555 O C1 NAG . O NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.504 ? covale ? covale23 P O4 NAG . P NAG 1 1_555 P C1 NAG . P NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.504 ? covale ? covale24 Q O4 NAG . Q NAG 1 1_555 Q C1 NAG . Q NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.51 ? covale ? covale25 R O4 NAG . R NAG 1 1_555 R C1 NAG . R NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.51 ? covale ? covale26 R O6 NAG . R NAG 1 1_555 R C1 FUC . R FUC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.498 ? covale ? covale27 S O4 NAG . S NAG 1 1_555 S C1 NAG . S NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.508 ? covale ? covale28 T O4 NAG . T NAG 1 1_555 T C1 NAG . T NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.508 ? covale ? covale29 U O4 NAG . U NAG 1 1_555 U C1 NAG . U NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.501 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 258 n n C1 O1 NAG sing 259 n n C1 O5 NAG sing 260 n n C1 H1 NAG sing 261 n n C2 C3 NAG sing 262 n n C2 N2 NAG sing 263 n n C2 H2 NAG sing 264 n n C3 C4 NAG sing 265 n n C3 O3 NAG sing 266 n n C3 H3 NAG sing 267 n n C4 C5 NAG sing 268 n n C4 O4 NAG sing 269 n n C4 H4 NAG sing 270 n n C5 C6 NAG sing 271 n n C5 O5 NAG sing 272 n n C5 H5 NAG sing 273 n n C6 O6 NAG sing 274 n n C6 H61 NAG sing 275 n n C6 H62 NAG sing 276 n n C7 C8 NAG sing 277 n n C7 N2 NAG sing 278 n n C7 O7 NAG doub 279 n n C8 H81 NAG sing 280 n n C8 H82 NAG sing 281 n n C8 H83 NAG sing 282 n n N2 HN2 NAG sing 283 n n O1 HO1 NAG sing 284 n n O3 HO3 NAG sing 285 n n O4 HO4 NAG sing 286 n n O6 HO6 NAG sing 287 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 7TXZ _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id V _pdbx_nonpoly_scheme.entity_id 6 _pdbx_nonpoly_scheme.mon_id NAG _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 701 _pdbx_nonpoly_scheme.auth_seq_num 1006 _pdbx_nonpoly_scheme.pdb_mon_id NAG _pdbx_nonpoly_scheme.auth_mon_id NAG _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . V 6 255.976 309.462 265.045 1 47.17 ? C1 NAG 701 A 1 HETATM 2 C C2 NAG . . . V 6 256.56 310.355 263.884 1 47.69 ? C2 NAG 701 A 1 HETATM 3 C C3 NAG . . . V 6 256.134 311.828 264.14 1 48.11 ? C3 NAG 701 A 1 HETATM 4 C C4 NAG . . . V 6 254.586 311.913 264.193 1 48.27 ? C4 NAG 701 A 1 HETATM 5 C C5 NAG . . . V 6 254.071 310.979 265.328 1 47.53 ? C5 NAG 701 A 1 HETATM 6 C C6 NAG . . . V 6 252.55 310.958 265.427 1 47.9 ? C6 NAG 701 A 1 HETATM 7 C C7 NAG . . . V 6 258.697 309.409 263.13 1 47.84 ? C7 NAG 701 A 1 HETATM 8 C C8 NAG . . . V 6 260.194 309.347 263.197 1 48.55 ? C8 NAG 701 A 1 HETATM 9 N N2 NAG . . . V 6 258.033 310.26 263.912 1 47.72 ? N2 NAG 701 A 1 HETATM 10 O O3 NAG . . . V 6 256.629 312.66 263.079 1 48.27 ? O3 NAG 701 A 1 HETATM 11 O O4 NAG . . . V 6 254.196 313.261 264.454 1 48.41 ? O4 NAG 701 A 1 HETATM 12 O O5 NAG . . . V 6 254.524 309.596 265.081 1 47.18 ? O5 NAG 701 A 1 HETATM 13 O O6 NAG . . . V 6 251.925 310.645 264.186 1 47.87 ? O6 NAG 701 A 1 HETATM 14 O O7 NAG . . . V 6 258.094 308.658 262.347 1 47.96 ? O7 NAG 701 A 1 # _model_server_stats.io_time_ms 47 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 254 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #