data_7TY0 # _model_server_result.job_id lmTUf2JsM-RtCJnYcCZsPg _model_server_result.datetime_utc '2025-07-31 06:30:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ty0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Q","auth_seq_id":701}' # _entry.id 7TY0 # _exptl.entry_id 7TY0 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 221.208 _entity.id 7 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 Q N N ? 7 R N N ? 7 S N N ? 7 T N N ? 7 U N N ? 7 V N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 4 oligosaccharide 5 oligosaccharide 6 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 5 2 1 NAG NAG C1 O1 . O4 HO4 . sing 3 ? 5 3 1 FUC NAG C1 O1 . O6 HO6 . sing 4 ? 6 2 1 NAG NAG C1 O1 . O4 HO4 . sing 5 ? 6 3 2 BMA NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 4 n I NAG 1 E 1 NAG A 1015 NAG 4 n I NAG 2 E 2 NAG A 1016 NAG 4 n J NAG 1 F 1 NAG B 1015 NAG 4 n J NAG 2 F 2 NAG B 1016 NAG 4 n K NAG 1 G 1 NAG D 1001 NAG 4 n K NAG 2 G 2 NAG D 1002 NAG 4 n L NAG 1 H 1 NAG D 1110 NAG 4 n L NAG 2 H 2 NAG D 1111 NAG 5 n M NAG 1 I 1 NAG D 1113 NAG 5 n M NAG 2 I 2 NAG D 1115 NAG 5 n M FUC 3 I 3 FUC D 1114 FUC 6 n N NAG 1 L 1 NAG C 1001 NAG 6 n N NAG 2 L 2 NAG C 1002 NAG 6 n N BMA 3 L 3 BMA C 1003 BMA 4 n O NAG 1 M 1 NAG C 1007 NAG 4 n O NAG 2 M 2 NAG C 1008 NAG 4 n P NAG 1 P 1 NAG C 1014 NAG 4 n P NAG 2 P 2 NAG C 1015 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 83 A CYS 146 1_555 H SG CYS 83 C CYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf2 A SG CYS 95 A CYS 158 1_555 G SG CYS 99 D CYS 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf3 A SG CYS 99 A CYS 162 1_555 G SG CYS 95 D CYS 158 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf4 B SG CYS 83 B CYS 146 1_555 G SG CYS 83 D CYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf5 B SG CYS 95 B CYS 158 1_555 H SG CYS 99 C CYS 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf6 B SG CYS 99 B CYS 162 1_555 H SG CYS 95 C CYS 158 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf7 C SG CYS 22 J CYS 22 1_555 C SG CYS 98 J CYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf8 D SG CYS 22 K CYS 22 1_555 D SG CYS 98 K CYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf9 E SG CYS 23 N CYS 23 1_555 E SG CYS 92 N CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf10 F SG CYS 23 O CYS 23 1_555 F SG CYS 92 O CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? disulf ? disulf11 G SG CYS 126 D CYS 189 1_555 G SG CYS 538 D CYS 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf12 G SG CYS 153 D CYS 216 1_555 G SG CYS 177 D CYS 240 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf13 G SG CYS 219 D CYS 282 1_555 G SG CYS 232 D CYS 295 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf14 G SG CYS 319 D CYS 382 1_555 G SG CYS 332 D CYS 395 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf15 G SG CYS 324 D CYS 387 1_555 G SG CYS 436 D CYS 499 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf16 G SG CYS 430 D CYS 493 1_555 G SG CYS 440 D CYS 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf17 G SG CYS 502 D CYS 565 1_555 G SG CYS 511 D CYS 574 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf18 H SG CYS 126 C CYS 189 1_555 H SG CYS 538 C CYS 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf19 H SG CYS 153 C CYS 216 1_555 H SG CYS 177 C CYS 240 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf20 H SG CYS 219 C CYS 282 1_555 H SG CYS 232 C CYS 295 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf21 H SG CYS 319 C CYS 382 1_555 H SG CYS 332 C CYS 395 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf22 H SG CYS 324 C CYS 387 1_555 H SG CYS 436 C CYS 499 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf23 H SG CYS 430 C CYS 493 1_555 H SG CYS 440 C CYS 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf24 H SG CYS 502 C CYS 565 1_555 H SG CYS 511 C CYS 574 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? covale ? covale1 A ND2 ASN 96 A ASN 159 1_555 I C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.511 ? covale ? covale2 B ND2 ASN 96 B ASN 159 1_555 J C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.51 ? covale ? covale3 G ND2 ASN 96 D ASN 159 1_555 R C1 NAG . D NAG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.51 ? covale ? covale4 G ND2 ASN 243 D ASN 306 1_555 K C1 NAG . G NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.508 ? covale ? covale5 G ND2 ASN 315 D ASN 378 1_555 Q C1 NAG . D NAG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.505 ? covale ? covale6 G ND2 ASN 354 D ASN 417 1_555 S C1 NAG . D NAG 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.497 ? covale ? covale7 G ND2 ASN 418 D ASN 481 1_555 L C1 NAG . H NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? covale ? covale8 G ND2 ASN 466 D ASN 529 1_555 M C1 NAG . I NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.493 ? covale ? covale9 H ND2 ASN 96 C ASN 159 1_555 P C1 NAG . P NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.592 ? covale ? covale10 H ND2 ASN 243 C ASN 306 1_555 N C1 NAG . L NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.506 ? covale ? covale11 H ND2 ASN 315 C ASN 378 1_555 T C1 NAG . C NAG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.499 ? covale ? covale12 H ND2 ASN 354 C ASN 417 1_555 O C1 NAG . M NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.502 ? covale ? covale13 H ND2 ASN 418 C ASN 481 1_555 U C1 NAG . C NAG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.494 ? covale ? covale14 H ND2 ASN 466 C ASN 529 1_555 V C1 NAG . C NAG 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.475 ? covale ? covale15 I O4 NAG . E NAG 1 1_555 I C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.515 ? covale ? covale16 J O4 NAG . F NAG 1 1_555 J C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.509 ? covale ? covale17 K O4 NAG . G NAG 1 1_555 K C1 NAG . G NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.509 ? covale ? covale18 L O4 NAG . H NAG 1 1_555 L C1 NAG . H NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.514 ? covale ? covale19 M O4 NAG . I NAG 1 1_555 M C1 NAG . I NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.495 ? covale ? covale20 M O6 NAG . I NAG 1 1_555 M C1 FUC . I FUC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.505 ? covale ? covale21 N O4 NAG . L NAG 1 1_555 N C1 NAG . L NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.506 ? covale ? covale22 N O4 NAG . L NAG 2 1_555 N C1 BMA . L BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.509 ? covale ? covale23 O O4 NAG . M NAG 1 1_555 O C1 NAG . M NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.507 ? covale ? covale24 P O4 NAG . P NAG 1 1_555 P C1 NAG . P NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.507 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 282 n n C1 O1 NAG sing 283 n n C1 O5 NAG sing 284 n n C1 H1 NAG sing 285 n n C2 C3 NAG sing 286 n n C2 N2 NAG sing 287 n n C2 H2 NAG sing 288 n n C3 C4 NAG sing 289 n n C3 O3 NAG sing 290 n n C3 H3 NAG sing 291 n n C4 C5 NAG sing 292 n n C4 O4 NAG sing 293 n n C4 H4 NAG sing 294 n n C5 C6 NAG sing 295 n n C5 O5 NAG sing 296 n n C5 H5 NAG sing 297 n n C6 O6 NAG sing 298 n n C6 H61 NAG sing 299 n n C6 H62 NAG sing 300 n n C7 C8 NAG sing 301 n n C7 N2 NAG sing 302 n n C7 O7 NAG doub 303 n n C8 H81 NAG sing 304 n n C8 H82 NAG sing 305 n n C8 H83 NAG sing 306 n n N2 HN2 NAG sing 307 n n O1 HO1 NAG sing 308 n n O3 HO3 NAG sing 309 n n O4 HO4 NAG sing 310 n n O6 HO6 NAG sing 311 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 7TY0 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code Q 7 NAG D 1 701 1006 NAG NAG . R 7 NAG D 1 702 1015 NAG NAG . S 7 NAG D 1 703 1112 NAG NAG . T 7 NAG C 1 701 1006 NAG NAG . U 7 NAG C 1 702 1009 NAG NAG . V 7 NAG C 1 703 1012 NAG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . Q 7 221.672 289.544 173.071 1 61.07 ? C1 NAG 701 D 1 HETATM 2 C C2 NAG . . . Q 7 222.887 290.287 173.763 1 61.39 ? C2 NAG 701 D 1 HETATM 3 C C3 NAG . . . Q 7 222.566 291.811 173.794 1 61.75 ? C3 NAG 701 D 1 HETATM 4 C C4 NAG . . . Q 7 222.358 292.306 172.336 1 62.27 ? C4 NAG 701 D 1 HETATM 5 C C5 NAG . . . Q 7 221.186 291.509 171.687 1 62.11 ? C5 NAG 701 D 1 HETATM 6 C C6 NAG . . . Q 7 220.979 291.894 170.226 1 61.32 ? C6 NAG 701 D 1 HETATM 7 C C7 NAG . . . Q 7 224.249 289.688 175.716 1 62.5 ? C7 NAG 701 D 1 HETATM 8 C C8 NAG . . . Q 7 224.385 289.12 177.098 1 61.07 ? C8 NAG 701 D 1 HETATM 9 N N2 NAG . . . Q 7 223.049 289.741 175.127 1 61.44 ? N2 NAG 701 D 1 HETATM 10 O O3 NAG . . . Q 7 223.654 292.535 174.393 1 61.61 ? O3 NAG 701 D 1 HETATM 11 O O4 NAG . . . Q 7 222.055 293.702 172.353 1 63.46 ? O4 NAG 701 D 1 HETATM 12 O O5 NAG . . . Q 7 221.49 290.063 171.719 1 60.83 ? O5 NAG 701 D 1 HETATM 13 O O6 NAG . . . Q 7 219.699 291.486 169.757 1 61.98 ? O6 NAG 701 D 1 HETATM 14 O O7 NAG . . . Q 7 225.265 290.109 175.136 1 61.47 ? O7 NAG 701 D 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 14 #