data_7TY3 # _model_server_result.job_id rzC9M5terN8fpyav0LSOsw _model_server_result.datetime_utc '2024-10-20 03:28:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ty3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1805}' # _entry.id 7TY3 # _exptl.entry_id 7TY3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 400.49 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[(1R,3R)-3-(4-acetylpiperazin-1-yl)cyclohexyl]-4-fluoro-7-methyl-1H-indole-2-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7TY3 _cell.length_a 52.092 _cell.length_b 76.702 _cell.length_c 75.461 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7TY3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 66 A CYS 1499 1_555 B ZN ZN . A ZN 1801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? metalc ? metalc2 A SG CYS 68 A CYS 1501 1_555 B ZN ZN . A ZN 1801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? metalc ? metalc3 A SG CYS 83 A CYS 1516 1_555 B ZN ZN . A ZN 1801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? metalc ? metalc4 A SG CYS 83 A CYS 1516 1_555 C ZN ZN . A ZN 1802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? metalc ? metalc5 A SG CYS 87 A CYS 1520 1_555 B ZN ZN . A ZN 1801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? metalc ? metalc6 A SG CYS 96 A CYS 1529 1_555 C ZN ZN . A ZN 1802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? metalc ? metalc7 A SG CYS 100 A CYS 1533 1_555 C ZN ZN . A ZN 1802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? metalc ? metalc8 A SG CYS 106 A CYS 1539 1_555 C ZN ZN . A ZN 1802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc9 A SG CYS 198 A CYS 1631 1_555 D ZN ZN . A ZN 1803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? metalc ? metalc10 A SG CYS 245 A CYS 1678 1_555 D ZN ZN . A ZN 1803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? metalc ? metalc11 A SG CYS 247 A CYS 1680 1_555 D ZN ZN . A ZN 1803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? metalc ? metalc12 A SG CYS 252 A CYS 1685 1_555 D ZN ZN . A ZN 1803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? # _chem_comp.formula 'C22 H29 F N4 O2' _chem_comp.formula_weight 400.49 _chem_comp.id KRF _chem_comp.mon_nstd_flag . _chem_comp.name N-[(1R,3R)-3-(4-acetylpiperazin-1-yl)cyclohexyl]-4-fluoro-7-methyl-1H-indole-2-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C8 C9 KRF sing 182 n n C8 C7 KRF sing 183 n n C10 C9 KRF sing 184 n n C10 C11 KRF sing 185 n n C6 C5 KRF sing 186 n n C6 N1 KRF sing 187 n n C5 N2 KRF sing 188 n n O1 C2 KRF doub 189 n n C11 C12 KRF sing 190 n n C11 N3 KRF sing 191 n n C7 N2 KRF sing 192 n n C7 C12 KRF sing 193 n n N2 C4 KRF sing 194 n n N1 C2 KRF sing 195 n n N1 C3 KRF sing 196 n n C2 C1 KRF sing 197 n n N3 C13 KRF sing 198 n n O2 C13 KRF doub 199 n n C4 C3 KRF sing 200 n n C13 C14 KRF sing 201 n n C14 N4 KRF sing 202 n y C14 C15 KRF doub 203 n y N4 C21 KRF sing 204 n y C15 C16 KRF sing 205 n y C21 C16 KRF doub 206 n y C21 C20 KRF sing 207 n y C22 C20 KRF sing 208 n n C16 C17 KRF sing 209 n y C20 C19 KRF doub 210 n y C17 F KRF sing 211 n n C17 C18 KRF doub 212 n y C19 C18 KRF sing 213 n y N3 H1 KRF sing 214 n n C4 H2 KRF sing 215 n n C4 H3 KRF sing 216 n n C5 H4 KRF sing 217 n n C5 H5 KRF sing 218 n n C6 H6 KRF sing 219 n n C6 H7 KRF sing 220 n n C7 H8 KRF sing 221 n n C8 H9 KRF sing 222 n n C8 H10 KRF sing 223 n n C10 H11 KRF sing 224 n n C10 H12 KRF sing 225 n n C15 H13 KRF sing 226 n n C22 H14 KRF sing 227 n n C22 H15 KRF sing 228 n n C22 H16 KRF sing 229 n n C1 H17 KRF sing 230 n n C1 H18 KRF sing 231 n n C1 H19 KRF sing 232 n n C3 H20 KRF sing 233 n n C3 H21 KRF sing 234 n n C9 H23 KRF sing 235 n n C9 H24 KRF sing 236 n n C11 H25 KRF sing 237 n n C12 H26 KRF sing 238 n n C12 H27 KRF sing 239 n n C18 H28 KRF sing 240 n n C19 H29 KRF sing 241 n n N4 H30 KRF sing 242 n n # _atom_sites.entry_id 7TY3 _atom_sites.fract_transf_matrix[1][1] 0.019197 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013037 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013252 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 1801 1 ZN ZN . C 2 ZN A 1 1802 2 ZN ZN . D 2 ZN A 1 1803 3 ZN ZN . E 3 SAM A 1 1804 1 SAM SAM . F 4 KRF A 1 1805 1 KRF LIG . G 5 EDO A 1 1806 1 EDO EDO . H 6 HOH A 1 1901 19 HOH HOH . H 6 HOH A 2 1902 24 HOH HOH . H 6 HOH A 3 1903 17 HOH HOH . H 6 HOH A 4 1904 18 HOH HOH . H 6 HOH A 5 1905 20 HOH HOH . H 6 HOH A 6 1906 3 HOH HOH . H 6 HOH A 7 1907 14 HOH HOH . H 6 HOH A 8 1908 25 HOH HOH . H 6 HOH A 9 1909 16 HOH HOH . H 6 HOH A 10 1910 12 HOH HOH . H 6 HOH A 11 1911 5 HOH HOH . H 6 HOH A 12 1912 1 HOH HOH . H 6 HOH A 13 1913 10 HOH HOH . H 6 HOH A 14 1914 4 HOH HOH . H 6 HOH A 15 1915 23 HOH HOH . H 6 HOH A 16 1916 2 HOH HOH . H 6 HOH A 17 1917 7 HOH HOH . H 6 HOH A 18 1918 13 HOH HOH . H 6 HOH A 19 1919 8 HOH HOH . H 6 HOH A 20 1920 11 HOH HOH . H 6 HOH A 21 1921 22 HOH HOH . H 6 HOH A 22 1922 6 HOH HOH . H 6 HOH A 23 1923 21 HOH HOH . H 6 HOH A 24 1924 15 HOH HOH . H 6 HOH A 25 1925 9 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 KRF . . . F 4 -6.84 32.508 7.554 0.88 51.42 ? N1 KRF 1805 A 1 HETATM 2 N N3 KRF . . . F 4 -2.907 27.028 8.357 0.88 47.35 ? N3 KRF 1805 A 1 HETATM 3 C C4 KRF . . . F 4 -4.997 31.262 8.524 0.88 51.95 ? C4 KRF 1805 A 1 HETATM 4 C C5 KRF . . . F 4 -5.637 30.957 6.186 0.88 52.53 ? C5 KRF 1805 A 1 HETATM 5 C C6 KRF . . . F 4 -6.34 32.309 6.185 0.88 52.24 ? C6 KRF 1805 A 1 HETATM 6 C C7 KRF . . . F 4 -3.704 29.769 7.153 0.88 49.81 ? C7 KRF 1805 A 1 HETATM 7 C C8 KRF . . . F 4 -2.778 29.791 5.934 0.88 50.14 ? C8 KRF 1805 A 1 HETATM 8 C C10 KRF . . . F 4 -2.775 27.27 5.936 0.88 49.8 ? C10 KRF 1805 A 1 HETATM 9 C C13 KRF . . . F 4 -2.857 25.829 8.976 0.88 46.99 ? C13 KRF 1805 A 1 HETATM 10 C C15 KRF . . . F 4 -1.397 26.519 10.988 0.88 46.51 ? C15 KRF 1805 A 1 HETATM 11 C C17 KRF . . . F 4 0.226 26.12 13.01 0.88 47.73 ? C17 KRF 1805 A 1 HETATM 12 C C20 KRF . . . F 4 -0.068 23.441 12.29 0.88 48.9 ? C20 KRF 1805 A 1 HETATM 13 C C21 KRF . . . F 4 -0.733 24.433 11.566 0.88 48.7 ? C21 KRF 1805 A 1 HETATM 14 C C22 KRF . . . F 4 -0.213 21.984 11.909 0.88 47.41 ? C22 KRF 1805 A 1 HETATM 15 C C1 KRF . . . F 4 -8.694 32.828 9.209 0.88 52.97 ? C1 KRF 1805 A 1 HETATM 16 C C2 KRF . . . F 4 -8.157 32.619 7.82 0.88 52.15 ? C2 KRF 1805 A 1 HETATM 17 O O1 KRF . . . F 4 -8.952 32.554 6.907 0.88 55.15 ? O1 KRF 1805 A 1 HETATM 18 C C3 KRF . . . F 4 -5.788 32.572 8.578 0.88 53.33 ? C3 KRF 1805 A 1 HETATM 19 N N2 KRF . . . F 4 -4.53 30.984 7.16 0.88 49.88 ? N2 KRF 1805 A 1 HETATM 20 C C9 KRF . . . F 4 -1.899 28.538 5.94 0.88 50.59 ? C9 KRF 1805 A 1 HETATM 21 C C11 KRF . . . F 4 -3.724 27.225 7.146 0.88 49.11 ? C11 KRF 1805 A 1 HETATM 22 C C12 KRF . . . F 4 -4.574 28.497 7.167 0.88 49.9 ? C12 KRF 1805 A 1 HETATM 23 O O2 KRF . . . F 4 -3.469 24.877 8.515 0.88 44.65 ? O2 KRF 1805 A 1 HETATM 24 C C14 KRF . . . F 4 -1.99 25.62 10.147 0.88 46.7 ? C14 KRF 1805 A 1 HETATM 25 C C16 KRF . . . F 4 -0.598 25.791 11.911 0.88 47.71 ? C16 KRF 1805 A 1 HETATM 26 C C18 KRF . . . F 4 0.873 25.129 13.705 0.88 48.58 ? C18 KRF 1805 A 1 HETATM 27 C C19 KRF . . . F 4 0.727 23.797 13.349 0.88 48.89 ? C19 KRF 1805 A 1 HETATM 28 N N4 KRF . . . F 4 -1.571 24.362 10.489 0.88 48.26 ? N4 KRF 1805 A 1 HETATM 29 F F KRF . . . F 4 0.42 27.386 13.411 0.88 46.69 ? F KRF 1805 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 29 #