data_7TY4 # _model_server_result.job_id MflnIYFlvMDw9Vs6Ec7-Ew _model_server_result.datetime_utc '2025-02-28 21:38:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ty4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":2203}' # _entry.id 7TY4 # _exptl.entry_id 7TY4 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 486.726 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CHOLESTEROL HEMISUCCINATE' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7TY4 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7TY4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 G N N ? 5 H N N ? 5 I N N ? 5 L N N ? 5 M N N ? 5 N N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C NAG 1 C 1 NAG A 2401 NAG 2 n C NAG 2 C 2 NAG A 2402 NAG 2 n D NAG 1 D 1 NAG B 2401 NAG 2 n D NAG 2 D 2 NAG B 2402 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A ND2 ASN 642 A ASN 642 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale2 B ND2 ASN 642 B ASN 642 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale3 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale4 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? # _chem_comp.formula 'C31 H50 O4' _chem_comp.formula_weight 486.726 _chem_comp.id Y01 _chem_comp.mon_nstd_flag . _chem_comp.name 'CHOLESTEROL HEMISUCCINATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAA CBA Y01 sing 624 n n CBA CAB Y01 sing 625 n n CBA CAN Y01 sing 626 n n CAN CAJ Y01 sing 627 n n CAJ CAO Y01 sing 628 n n CAO CBB Y01 sing 629 n n CBB CAC Y01 sing 630 n n CBB CBE Y01 sing 631 n n CBE CAP Y01 sing 632 n n CBE CBI Y01 sing 633 n n CAP CAQ Y01 sing 634 n n CAQ CBG Y01 sing 635 n n CBG CBI Y01 sing 636 n n CBG CBD Y01 sing 637 n n CBI CAE Y01 sing 638 n n CBI CAU Y01 sing 639 n n CAU CAS Y01 sing 640 n n CAS CBF Y01 sing 641 n n CBF CBD Y01 sing 642 n n CBF CBH Y01 sing 643 n n CBD CAK Y01 sing 644 n n CAK CAI Y01 sing 645 n n CAI CAZ Y01 doub 646 n n CAZ CAV Y01 sing 647 n n CAZ CBH Y01 sing 648 n n CAV CBC Y01 sing 649 n n CBH CAD Y01 sing 650 n n CBH CAT Y01 sing 651 n n CAT CAR Y01 sing 652 n n CAR CBC Y01 sing 653 n n CBC OAW Y01 sing 654 n n OAW CAY Y01 sing 655 n n CAY OAG Y01 doub 656 n n CAY CAM Y01 sing 657 n n CAM CAL Y01 sing 658 n n CAL CAX Y01 sing 659 n n CAX OAH Y01 sing 660 n n CAX OAF Y01 doub 661 n n CAA HAA1 Y01 sing 662 n n CAA HAA2 Y01 sing 663 n n CAA HAA3 Y01 sing 664 n n CBA HBA Y01 sing 665 n n CAB HAB1 Y01 sing 666 n n CAB HAB2 Y01 sing 667 n n CAB HAB3 Y01 sing 668 n n CAN HAN1 Y01 sing 669 n n CAN HAN2 Y01 sing 670 n n CAJ HAJ1 Y01 sing 671 n n CAJ HAJ2 Y01 sing 672 n n CAO HAO1 Y01 sing 673 n n CAO HAO2 Y01 sing 674 n n CBB HBB Y01 sing 675 n n CAC HAC1 Y01 sing 676 n n CAC HAC2 Y01 sing 677 n n CAC HAC3 Y01 sing 678 n n CBE HBE Y01 sing 679 n n CAP HAP1 Y01 sing 680 n n CAP HAP2 Y01 sing 681 n n CAQ HAQ1 Y01 sing 682 n n CAQ HAQ2 Y01 sing 683 n n CBG HBG Y01 sing 684 n n CBD HBD Y01 sing 685 n n CAE HAE1 Y01 sing 686 n n CAE HAE2 Y01 sing 687 n n CAE HAE3 Y01 sing 688 n n CAU HAU1 Y01 sing 689 n n CAU HAU2 Y01 sing 690 n n CAS HAS1 Y01 sing 691 n n CAS HAS2 Y01 sing 692 n n CBF HBF Y01 sing 693 n n CAK HAK1 Y01 sing 694 n n CAK HAK2 Y01 sing 695 n n CAI HAI Y01 sing 696 n n CAV HAV1 Y01 sing 697 n n CAV HAV2 Y01 sing 698 n n CBC HBC Y01 sing 699 n n CAD HAD1 Y01 sing 700 n n CAD HAD2 Y01 sing 701 n n CAD HAD3 Y01 sing 702 n n CAT HAT1 Y01 sing 703 n n CAT HAT2 Y01 sing 704 n n CAR HAR1 Y01 sing 705 n n CAR HAR2 Y01 sing 706 n n CAM HAM1 Y01 sing 707 n n CAM HAM2 Y01 sing 708 n n CAL HAL1 Y01 sing 709 n n CAL HAL2 Y01 sing 710 n n OAH HAH Y01 sing 711 n n # _atom_sites.entry_id 7TY4 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 CLR A 1 2201 2201 CLR CLR . F 4 PC1 A 1 2202 2301 PC1 PC1 . G 5 Y01 A 1 2203 2202 Y01 Y01 . H 5 Y01 A 1 2204 2203 Y01 Y01 . I 5 Y01 A 1 2205 2204 Y01 Y01 . J 3 CLR B 1 2201 2201 CLR CLR . K 4 PC1 B 1 2202 2301 PC1 PC1 . L 5 Y01 B 1 2203 2202 Y01 Y01 . M 5 Y01 B 1 2204 2203 Y01 Y01 . N 5 Y01 B 1 2205 2204 Y01 Y01 . O 6 HOH A 1 2301 3 HOH HOH . O 6 HOH A 2 2302 48 HOH HOH . O 6 HOH A 3 2303 36 HOH HOH . O 6 HOH A 4 2304 52 HOH HOH . O 6 HOH A 5 2305 51 HOH HOH . O 6 HOH A 6 2306 81 HOH HOH . O 6 HOH A 7 2307 41 HOH HOH . O 6 HOH A 8 2308 25 HOH HOH . O 6 HOH A 9 2309 56 HOH HOH . O 6 HOH A 10 2310 58 HOH HOH . O 6 HOH A 11 2311 21 HOH HOH . O 6 HOH A 12 2312 32 HOH HOH . O 6 HOH A 13 2313 54 HOH HOH . O 6 HOH A 14 2314 28 HOH HOH . O 6 HOH A 15 2315 67 HOH HOH . O 6 HOH A 16 2316 47 HOH HOH . O 6 HOH A 17 2317 62 HOH HOH . O 6 HOH A 18 2318 5 HOH HOH . O 6 HOH A 19 2319 26 HOH HOH . O 6 HOH A 20 2320 23 HOH HOH . O 6 HOH A 21 2321 65 HOH HOH . O 6 HOH A 22 2322 86 HOH HOH . O 6 HOH A 23 2323 8 HOH HOH . O 6 HOH A 24 2324 68 HOH HOH . O 6 HOH A 25 2325 45 HOH HOH . O 6 HOH A 26 2326 70 HOH HOH . O 6 HOH A 27 2327 1 HOH HOH . O 6 HOH A 28 2328 72 HOH HOH . O 6 HOH A 29 2329 83 HOH HOH . O 6 HOH A 30 2330 14 HOH HOH . O 6 HOH A 31 2331 38 HOH HOH . O 6 HOH A 32 2332 17 HOH HOH . O 6 HOH A 33 2333 76 HOH HOH . O 6 HOH A 34 2334 80 HOH HOH . O 6 HOH A 35 2335 13 HOH HOH . O 6 HOH A 36 2336 9 HOH HOH . O 6 HOH A 37 2337 61 HOH HOH . P 6 HOH B 1 2301 49 HOH HOH . P 6 HOH B 2 2302 4 HOH HOH . P 6 HOH B 3 2303 50 HOH HOH . P 6 HOH B 4 2304 82 HOH HOH . P 6 HOH B 5 2305 42 HOH HOH . P 6 HOH B 6 2306 57 HOH HOH . P 6 HOH B 7 2307 55 HOH HOH . P 6 HOH B 8 2308 20 HOH HOH . P 6 HOH B 9 2309 53 HOH HOH . P 6 HOH B 10 2310 33 HOH HOH . P 6 HOH B 11 2311 24 HOH HOH . P 6 HOH B 12 2312 84 HOH HOH . P 6 HOH B 13 2313 66 HOH HOH . P 6 HOH B 14 2314 27 HOH HOH . P 6 HOH B 15 2315 63 HOH HOH . P 6 HOH B 16 2316 22 HOH HOH . P 6 HOH B 17 2317 46 HOH HOH . P 6 HOH B 18 2318 6 HOH HOH . P 6 HOH B 19 2319 69 HOH HOH . P 6 HOH B 20 2320 85 HOH HOH . P 6 HOH B 21 2321 64 HOH HOH . P 6 HOH B 22 2322 7 HOH HOH . P 6 HOH B 23 2323 59 HOH HOH . P 6 HOH B 24 2324 11 HOH HOH . P 6 HOH B 25 2325 71 HOH HOH . P 6 HOH B 26 2326 2 HOH HOH . P 6 HOH B 27 2327 73 HOH HOH . P 6 HOH B 28 2328 37 HOH HOH . P 6 HOH B 29 2329 77 HOH HOH . P 6 HOH B 30 2330 16 HOH HOH . P 6 HOH B 31 2331 34 HOH HOH . P 6 HOH B 32 2332 12 HOH HOH . P 6 HOH B 33 2333 15 HOH HOH . P 6 HOH B 34 2334 10 HOH HOH . P 6 HOH B 35 2335 60 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA Y01 . . . L 5 180.925 151.018 183.844 1 203.24 ? CAA Y01 2203 B 1 HETATM 2 C CBA Y01 . . . L 5 179.492 151.412 183.523 1 203.16 ? CBA Y01 2203 B 1 HETATM 3 C CAB Y01 . . . L 5 179.3 152.912 183.688 1 205.86 ? CAB Y01 2203 B 1 HETATM 4 C CAN Y01 . . . L 5 178.492 150.624 184.37 1 200.54 ? CAN Y01 2203 B 1 HETATM 5 C CAJ Y01 . . . L 5 178.985 150.183 185.725 1 198.31 ? CAJ Y01 2203 B 1 HETATM 6 C CAO Y01 . . . L 5 178.869 151.256 186.778 1 196.84 ? CAO Y01 2203 B 1 HETATM 7 C CBB Y01 . . . L 5 180.196 151.694 187.413 1 195.3 ? CBB Y01 2203 B 1 HETATM 8 C CAC Y01 . . . L 5 180.407 153.194 187.23 1 193.26 ? CAC Y01 2203 B 1 HETATM 9 C CBE Y01 . . . L 5 180.252 151.243 188.883 1 194.85 ? CBE Y01 2203 B 1 HETATM 10 C CAP Y01 . . . L 5 180.254 149.694 189.017 1 195.38 ? CAP Y01 2203 B 1 HETATM 11 C CAQ Y01 . . . L 5 180.995 149.356 190.329 1 195.5 ? CAQ Y01 2203 B 1 HETATM 12 C CBG Y01 . . . L 5 181.152 150.728 190.974 1 194.75 ? CBG Y01 2203 B 1 HETATM 13 C CBI Y01 . . . L 5 181.456 151.648 189.782 1 195.49 ? CBI Y01 2203 B 1 HETATM 14 C CAE Y01 . . . L 5 182.773 151.268 189.087 1 197.73 ? CAE Y01 2203 B 1 HETATM 15 C CAU Y01 . . . L 5 181.53 153.092 190.308 1 195.53 ? CAU Y01 2203 B 1 HETATM 16 C CAS Y01 . . . L 5 181.115 153.298 191.777 1 196.02 ? CAS Y01 2203 B 1 HETATM 17 C CBF Y01 . . . L 5 181.617 152.256 192.796 1 196 ? CBF Y01 2203 B 1 HETATM 18 C CBD Y01 . . . L 5 182.101 150.965 192.128 1 193.93 ? CBD Y01 2203 B 1 HETATM 19 C CAK Y01 . . . L 5 182.098 149.855 193.172 1 192.78 ? CAK Y01 2203 B 1 HETATM 20 C CAI Y01 . . . L 5 182.679 150.336 194.467 1 194.76 ? CAI Y01 2203 B 1 HETATM 21 C CAZ Y01 . . . L 5 183.028 151.592 194.73 1 200.17 ? CAZ Y01 2203 B 1 HETATM 22 C CAV Y01 . . . L 5 183.798 151.937 195.986 1 204.15 ? CAV Y01 2203 B 1 HETATM 23 C CBH Y01 . . . L 5 182.668 152.762 193.818 1 200.96 ? CBH Y01 2203 B 1 HETATM 24 C CAD Y01 . . . L 5 183.95 153.257 193.125 1 203.01 ? CAD Y01 2203 B 1 HETATM 25 C CAT Y01 . . . L 5 182.057 153.893 194.675 1 202.97 ? CAT Y01 2203 B 1 HETATM 26 C CAR Y01 . . . L 5 182.879 154.226 195.92 1 204.58 ? CAR Y01 2203 B 1 HETATM 27 C CBC Y01 . . . L 5 183.095 153.011 196.779 1 205.77 ? CBC Y01 2203 B 1 HETATM 28 O OAW Y01 . . . L 5 183.957 153.379 197.896 1 209.96 ? OAW Y01 2203 B 1 HETATM 29 C CAY Y01 . . . L 5 184.383 152.419 198.71 1 213.74 ? CAY Y01 2203 B 1 HETATM 30 O OAG Y01 . . . L 5 183.715 151.485 199.048 1 210.84 ? OAG Y01 2203 B 1 HETATM 31 C CAM Y01 . . . L 5 185.797 152.656 199.159 1 216.93 ? CAM Y01 2203 B 1 HETATM 32 C CAL Y01 . . . L 5 186.272 154.094 199.108 1 218.76 ? CAL Y01 2203 B 1 HETATM 33 C CAX Y01 . . . L 5 186.238 154.823 200.44 1 218.76 ? CAX Y01 2203 B 1 HETATM 34 O OAH Y01 . . . L 5 187.08 154.51 201.305 1 220.23 ? OAH Y01 2203 B 1 HETATM 35 O OAF Y01 . . . L 5 185.369 155.7 200.61 1 217.71 ? OAF Y01 2203 B 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 35 #