data_7TY6 # _model_server_result.job_id R2Q0XNcPiy7EwfMV_WktRQ _model_server_result.datetime_utc '2024-12-01 09:08:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ty6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":2204}' # _entry.id 7TY6 # _exptl.entry_id 7TY6 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 454.52 _entity.id 5 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description "4,4'-Diisothiocyano-2,2'-stilbenedisulfonic acid" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7TY6 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7TY6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 H N N ? 5 N N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C NAG 1 C 1 NAG A 2401 NAG 2 n C NAG 2 C 2 NAG A 2402 NAG 2 n D NAG 1 D 1 NAG B 2401 NAG 2 n D NAG 2 D 2 NAG B 2402 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 539 A LYS 539 1_555 H CAT 4DS . A 4DS 2204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.29 ? covale ? covale2 A ND2 ASN 642 A ASN 642 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale3 B NZ LYS 539 B LYS 539 1_555 N CAT 4DS . B 4DS 2204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.276 ? covale ? covale4 B ND2 ASN 642 B ASN 642 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale5 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale6 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? # _chem_comp.formula 'C16 H10 N2 O6 S4' _chem_comp.formula_weight 454.52 _chem_comp.id 4DS _chem_comp.mon_nstd_flag . _chem_comp.name "4,4'-Diisothiocyano-2,2'-stilbenedisulfonic acid" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OAA HOA 4DS sing 1 n n OAA SAB 4DS sing 2 n n CAE SAB 4DS sing 3 n n SAB OAD 4DS doub 4 n n SAB OAC 4DS doub 5 n n CAJ CAE 4DS doub 6 n y CAE CAF 4DS sing 7 n y CAG CAF 4DS doub 8 n y CAF HAF 4DS sing 9 n n CAH CAG 4DS sing 10 n y CAG NAZ 4DS sing 11 n n HAH CAH 4DS sing 12 n n CAI CAH 4DS doub 13 n y HAI CAI 4DS sing 14 n n CAI CAJ 4DS sing 15 n y CAK CAJ 4DS sing 16 n n CAL CAK 4DS doub 17 e n CAK HAK 4DS sing 18 n n HAL CAL 4DS sing 19 n n CAM CAL 4DS sing 20 n n CAN CAM 4DS doub 21 n y CAM CAR 4DS sing 22 n y SAV CAN 4DS sing 23 n n CAO CAN 4DS sing 24 n y HAO CAO 4DS sing 25 n n CAO CAP 4DS doub 26 n y NAS CAP 4DS sing 27 n n CAP CAQ 4DS sing 28 n y CAQ CAR 4DS doub 29 n y CAQ HAQ 4DS sing 30 n n CAR HAR 4DS sing 31 n n CAT NAS 4DS doub 32 n n SAU CAT 4DS doub 33 n n OAX SAV 4DS doub 34 n n OAW SAV 4DS sing 35 n n SAV OAY 4DS doub 36 n n HOW OAW 4DS sing 37 n n CBA NAZ 4DS doub 38 n n SBB CBA 4DS doub 39 n n # _atom_sites.entry_id 7TY6 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 CLR A 1 2201 2201 CLR CLR . F 3 CLR A 1 2202 2204 CLR CLR . G 4 PC1 A 1 2203 2301 PC1 PC1 . H 5 4DS A 1 2204 2101 4DS HDD . I 3 CLR A 1 2205 2202 CLR CLR . J 3 CLR A 1 2206 2203 CLR CLR . K 3 CLR B 1 2201 2201 CLR CLR . L 3 CLR B 1 2202 2204 CLR CLR . M 4 PC1 B 1 2203 2301 PC1 PC1 . N 5 4DS B 1 2204 2101 4DS HDD . O 3 CLR B 1 2205 2202 CLR CLR . P 3 CLR B 1 2206 2203 CLR CLR . Q 6 HOH A 1 2301 12 HOH HOH . Q 6 HOH A 2 2302 8 HOH HOH . Q 6 HOH A 3 2303 2 HOH HOH . Q 6 HOH A 4 2304 43 HOH HOH . Q 6 HOH A 5 2305 59 HOH HOH . Q 6 HOH A 6 2306 14 HOH HOH . Q 6 HOH A 7 2307 30 HOH HOH . Q 6 HOH A 8 2308 11 HOH HOH . Q 6 HOH A 9 2309 4 HOH HOH . Q 6 HOH A 10 2310 41 HOH HOH . Q 6 HOH A 11 2311 25 HOH HOH . Q 6 HOH A 12 2312 35 HOH HOH . Q 6 HOH A 13 2313 46 HOH HOH . Q 6 HOH A 14 2314 53 HOH HOH . Q 6 HOH A 15 2315 33 HOH HOH . Q 6 HOH A 16 2316 22 HOH HOH . Q 6 HOH A 17 2317 21 HOH HOH . Q 6 HOH A 18 2318 47 HOH HOH . Q 6 HOH A 19 2319 64 HOH HOH . Q 6 HOH A 20 2320 32 HOH HOH . Q 6 HOH A 21 2321 48 HOH HOH . Q 6 HOH A 22 2322 61 HOH HOH . Q 6 HOH A 23 2323 6 HOH HOH . Q 6 HOH A 24 2324 38 HOH HOH . Q 6 HOH A 25 2325 19 HOH HOH . Q 6 HOH A 26 2326 13 HOH HOH . Q 6 HOH A 27 2327 16 HOH HOH . Q 6 HOH A 28 2328 45 HOH HOH . Q 6 HOH A 29 2329 39 HOH HOH . Q 6 HOH A 30 2330 57 HOH HOH . R 6 HOH B 1 2301 1 HOH HOH . R 6 HOH B 2 2302 15 HOH HOH . R 6 HOH B 3 2303 10 HOH HOH . R 6 HOH B 4 2304 42 HOH HOH . R 6 HOH B 5 2305 54 HOH HOH . R 6 HOH B 6 2306 50 HOH HOH . R 6 HOH B 7 2307 27 HOH HOH . R 6 HOH B 8 2308 51 HOH HOH . R 6 HOH B 9 2309 29 HOH HOH . R 6 HOH B 10 2310 62 HOH HOH . R 6 HOH B 11 2311 63 HOH HOH . R 6 HOH B 12 2312 5 HOH HOH . R 6 HOH B 13 2313 34 HOH HOH . R 6 HOH B 14 2314 24 HOH HOH . R 6 HOH B 15 2315 36 HOH HOH . R 6 HOH B 16 2316 9 HOH HOH . R 6 HOH B 17 2317 52 HOH HOH . R 6 HOH B 18 2318 40 HOH HOH . R 6 HOH B 19 2319 28 HOH HOH . R 6 HOH B 20 2320 55 HOH HOH . R 6 HOH B 21 2321 20 HOH HOH . R 6 HOH B 22 2322 17 HOH HOH . R 6 HOH B 23 2323 3 HOH HOH . R 6 HOH B 24 2324 23 HOH HOH . R 6 HOH B 25 2325 31 HOH HOH . R 6 HOH B 26 2326 49 HOH HOH . R 6 HOH B 27 2327 60 HOH HOH . R 6 HOH B 28 2328 7 HOH HOH . R 6 HOH B 29 2329 37 HOH HOH . R 6 HOH B 30 2330 26 HOH HOH . R 6 HOH B 31 2331 18 HOH HOH . R 6 HOH B 32 2332 56 HOH HOH . R 6 HOH B 33 2333 44 HOH HOH . R 6 HOH B 34 2334 58 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OAA 4DS . . . H 5 164.674 156.1 174.656 1 188.36 ? OAA 4DS 2204 A 1 HETATM 2 S SAB 4DS . . . H 5 164.339 157.601 174.505 1 187.99 ? SAB 4DS 2204 A 1 HETATM 3 O OAC 4DS . . . H 5 163.171 157.8 173.689 1 185.69 ? OAC 4DS 2204 A 1 HETATM 4 O OAD 4DS . . . H 5 165.562 158.39 173.983 1 188.47 ? OAD 4DS 2204 A 1 HETATM 5 C CAE 4DS . . . H 5 164.025 158.219 176.134 1 177 ? CAE 4DS 2204 A 1 HETATM 6 C CAF 4DS . . . H 5 164.028 157.332 177.209 1 174.27 ? CAF 4DS 2204 A 1 HETATM 7 C CAG 4DS . . . H 5 163.789 157.783 178.501 1 173.65 ? CAG 4DS 2204 A 1 HETATM 8 C CAH 4DS . . . H 5 163.542 159.132 178.712 1 173.49 ? CAH 4DS 2204 A 1 HETATM 9 C CAI 4DS . . . H 5 163.537 160.018 177.65 1 172.57 ? CAI 4DS 2204 A 1 HETATM 10 C CAJ 4DS . . . H 5 163.783 159.595 176.344 1 169.9 ? CAJ 4DS 2204 A 1 HETATM 11 C CAK 4DS . . . H 5 163.738 160.639 175.248 1 165.43 ? CAK 4DS 2204 A 1 HETATM 12 C CAL 4DS . . . H 5 164.959 161.566 175.231 1 161.26 ? CAL 4DS 2204 A 1 HETATM 13 C CAM 4DS . . . H 5 164.713 162.802 174.392 1 157.88 ? CAM 4DS 2204 A 1 HETATM 14 C CAN 4DS . . . H 5 164.231 164.03 174.893 1 158.93 ? CAN 4DS 2204 A 1 HETATM 15 C CAO 4DS . . . H 5 164.032 165.114 174.041 1 160.53 ? CAO 4DS 2204 A 1 HETATM 16 C CAP 4DS . . . H 5 164.31 164.989 172.681 1 160.7 ? CAP 4DS 2204 A 1 HETATM 17 C CAQ 4DS . . . H 5 164.782 163.784 172.182 1 160.72 ? CAQ 4DS 2204 A 1 HETATM 18 C CAR 4DS . . . H 5 164.975 162.713 173.025 1 159.92 ? CAR 4DS 2204 A 1 HETATM 19 N NAS 4DS . . . H 5 164.111 166.081 171.807 1 163.88 ? NAS 4DS 2204 A 1 HETATM 20 C CAT 4DS . . . H 5 164.449 167.323 172.082 1 153.66 ? CAT 4DS 2204 A 1 HETATM 21 S SAU 4DS . . . H 5 163.481 168.45 172.797 1 169.21 ? SAU 4DS 2204 A 1 HETATM 22 S SAV 4DS . . . H 5 163.862 164.227 176.612 1 159.87 ? SAV 4DS 2204 A 1 HETATM 23 O OAW 4DS . . . H 5 165.032 163.928 177.393 1 163.98 ? OAW 4DS 2204 A 1 HETATM 24 O OAX 4DS . . . H 5 163.446 165.702 176.793 1 162.64 ? OAX 4DS 2204 A 1 HETATM 25 O OAY 4DS . . . H 5 162.671 163.293 176.909 1 155.22 ? OAY 4DS 2204 A 1 HETATM 26 N NAZ 4DS . . . H 5 163.788 156.885 179.589 1 168.38 ? NAZ 4DS 2204 A 1 HETATM 27 C CBA 4DS . . . H 5 162.797 156.732 180.445 1 164.68 ? CBA 4DS 2204 A 1 HETATM 28 S SBB 4DS . . . H 5 161.555 156.705 181.434 1 159.25 ? SBB 4DS 2204 A 1 # _model_server_stats.io_time_ms 81 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 28 #