data_7TY6 # _model_server_result.job_id hQsK1mqgcrQgVs9DJoYw-A _model_server_result.datetime_utc '2024-11-08 19:17:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ty6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":2205}' # _entry.id 7TY6 # _exptl.entry_id 7TY6 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 386.654 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CHOLESTEROL _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7TY6 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7TY6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 I N N ? 3 J N N ? 3 K N N ? 3 L N N ? 3 O N N ? 3 P N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C NAG 1 C 1 NAG A 2401 NAG 2 n C NAG 2 C 2 NAG A 2402 NAG 2 n D NAG 1 D 1 NAG B 2401 NAG 2 n D NAG 2 D 2 NAG B 2402 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 539 A LYS 539 1_555 H CAT 4DS . A 4DS 2204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.29 ? covale ? covale2 A ND2 ASN 642 A ASN 642 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale3 B NZ LYS 539 B LYS 539 1_555 N CAT 4DS . B 4DS 2204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.276 ? covale ? covale4 B ND2 ASN 642 B ASN 642 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale5 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale6 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? # _chem_comp.formula 'C27 H46 O' _chem_comp.formula_weight 386.654 _chem_comp.id CLR _chem_comp.mon_nstd_flag . _chem_comp.name CHOLESTEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 CLR sing 109 n n C1 C10 CLR sing 110 n n C1 H11 CLR sing 111 n n C1 H12 CLR sing 112 n n C2 C3 CLR sing 113 n n C2 H21 CLR sing 114 n n C2 H22 CLR sing 115 n n C3 C4 CLR sing 116 n n C3 O1 CLR sing 117 n n C3 H3 CLR sing 118 n n C4 C5 CLR sing 119 n n C4 H41 CLR sing 120 n n C4 H42 CLR sing 121 n n C5 C6 CLR doub 122 n n C5 C10 CLR sing 123 n n C6 C7 CLR sing 124 n n C6 H6 CLR sing 125 n n C7 C8 CLR sing 126 n n C7 H71 CLR sing 127 n n C7 H72 CLR sing 128 n n C8 C9 CLR sing 129 n n C8 C14 CLR sing 130 n n C8 H8 CLR sing 131 n n C9 C10 CLR sing 132 n n C9 C11 CLR sing 133 n n C9 H9 CLR sing 134 n n C10 C19 CLR sing 135 n n C11 C12 CLR sing 136 n n C11 H111 CLR sing 137 n n C11 H112 CLR sing 138 n n C12 C13 CLR sing 139 n n C12 H121 CLR sing 140 n n C12 H122 CLR sing 141 n n C13 C14 CLR sing 142 n n C13 C17 CLR sing 143 n n C13 C18 CLR sing 144 n n C14 C15 CLR sing 145 n n C14 H14 CLR sing 146 n n C15 C16 CLR sing 147 n n C15 H151 CLR sing 148 n n C15 H152 CLR sing 149 n n C16 C17 CLR sing 150 n n C16 H161 CLR sing 151 n n C16 H162 CLR sing 152 n n C17 C20 CLR sing 153 n n C17 H17 CLR sing 154 n n C18 H181 CLR sing 155 n n C18 H182 CLR sing 156 n n C18 H183 CLR sing 157 n n C19 H191 CLR sing 158 n n C19 H192 CLR sing 159 n n C19 H193 CLR sing 160 n n C20 C21 CLR sing 161 n n C20 C22 CLR sing 162 n n C20 H20 CLR sing 163 n n C21 H211 CLR sing 164 n n C21 H212 CLR sing 165 n n C21 H213 CLR sing 166 n n C22 C23 CLR sing 167 n n C22 H221 CLR sing 168 n n C22 H222 CLR sing 169 n n C23 C24 CLR sing 170 n n C23 H231 CLR sing 171 n n C23 H232 CLR sing 172 n n C24 C25 CLR sing 173 n n C24 H241 CLR sing 174 n n C24 H242 CLR sing 175 n n C25 C26 CLR sing 176 n n C25 C27 CLR sing 177 n n C25 H25 CLR sing 178 n n C26 H261 CLR sing 179 n n C26 H262 CLR sing 180 n n C26 H263 CLR sing 181 n n C27 H271 CLR sing 182 n n C27 H272 CLR sing 183 n n C27 H273 CLR sing 184 n n O1 H1 CLR sing 185 n n # _atom_sites.entry_id 7TY6 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 CLR A 1 2201 2201 CLR CLR . F 3 CLR A 1 2202 2204 CLR CLR . G 4 PC1 A 1 2203 2301 PC1 PC1 . H 5 4DS A 1 2204 2101 4DS HDD . I 3 CLR A 1 2205 2202 CLR CLR . J 3 CLR A 1 2206 2203 CLR CLR . K 3 CLR B 1 2201 2201 CLR CLR . L 3 CLR B 1 2202 2204 CLR CLR . M 4 PC1 B 1 2203 2301 PC1 PC1 . N 5 4DS B 1 2204 2101 4DS HDD . O 3 CLR B 1 2205 2202 CLR CLR . P 3 CLR B 1 2206 2203 CLR CLR . Q 6 HOH A 1 2301 12 HOH HOH . Q 6 HOH A 2 2302 8 HOH HOH . Q 6 HOH A 3 2303 2 HOH HOH . Q 6 HOH A 4 2304 43 HOH HOH . Q 6 HOH A 5 2305 59 HOH HOH . Q 6 HOH A 6 2306 14 HOH HOH . Q 6 HOH A 7 2307 30 HOH HOH . Q 6 HOH A 8 2308 11 HOH HOH . Q 6 HOH A 9 2309 4 HOH HOH . Q 6 HOH A 10 2310 41 HOH HOH . Q 6 HOH A 11 2311 25 HOH HOH . Q 6 HOH A 12 2312 35 HOH HOH . Q 6 HOH A 13 2313 46 HOH HOH . Q 6 HOH A 14 2314 53 HOH HOH . Q 6 HOH A 15 2315 33 HOH HOH . Q 6 HOH A 16 2316 22 HOH HOH . Q 6 HOH A 17 2317 21 HOH HOH . Q 6 HOH A 18 2318 47 HOH HOH . Q 6 HOH A 19 2319 64 HOH HOH . Q 6 HOH A 20 2320 32 HOH HOH . Q 6 HOH A 21 2321 48 HOH HOH . Q 6 HOH A 22 2322 61 HOH HOH . Q 6 HOH A 23 2323 6 HOH HOH . Q 6 HOH A 24 2324 38 HOH HOH . Q 6 HOH A 25 2325 19 HOH HOH . Q 6 HOH A 26 2326 13 HOH HOH . Q 6 HOH A 27 2327 16 HOH HOH . Q 6 HOH A 28 2328 45 HOH HOH . Q 6 HOH A 29 2329 39 HOH HOH . Q 6 HOH A 30 2330 57 HOH HOH . R 6 HOH B 1 2301 1 HOH HOH . R 6 HOH B 2 2302 15 HOH HOH . R 6 HOH B 3 2303 10 HOH HOH . R 6 HOH B 4 2304 42 HOH HOH . R 6 HOH B 5 2305 54 HOH HOH . R 6 HOH B 6 2306 50 HOH HOH . R 6 HOH B 7 2307 27 HOH HOH . R 6 HOH B 8 2308 51 HOH HOH . R 6 HOH B 9 2309 29 HOH HOH . R 6 HOH B 10 2310 62 HOH HOH . R 6 HOH B 11 2311 63 HOH HOH . R 6 HOH B 12 2312 5 HOH HOH . R 6 HOH B 13 2313 34 HOH HOH . R 6 HOH B 14 2314 24 HOH HOH . R 6 HOH B 15 2315 36 HOH HOH . R 6 HOH B 16 2316 9 HOH HOH . R 6 HOH B 17 2317 52 HOH HOH . R 6 HOH B 18 2318 40 HOH HOH . R 6 HOH B 19 2319 28 HOH HOH . R 6 HOH B 20 2320 55 HOH HOH . R 6 HOH B 21 2321 20 HOH HOH . R 6 HOH B 22 2322 17 HOH HOH . R 6 HOH B 23 2323 3 HOH HOH . R 6 HOH B 24 2324 23 HOH HOH . R 6 HOH B 25 2325 31 HOH HOH . R 6 HOH B 26 2326 49 HOH HOH . R 6 HOH B 27 2327 60 HOH HOH . R 6 HOH B 28 2328 7 HOH HOH . R 6 HOH B 29 2329 37 HOH HOH . R 6 HOH B 30 2330 26 HOH HOH . R 6 HOH B 31 2331 18 HOH HOH . R 6 HOH B 32 2332 56 HOH HOH . R 6 HOH B 33 2333 44 HOH HOH . R 6 HOH B 34 2334 58 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CLR . . . I 3 185.668 154.724 196.339 1 156.75 ? C1 CLR 2205 A 1 HETATM 2 C C2 CLR . . . I 3 186.569 154.848 197.569 1 157.16 ? C2 CLR 2205 A 1 HETATM 3 C C3 CLR . . . I 3 186.041 154.022 198.714 1 154.04 ? C3 CLR 2205 A 1 HETATM 4 C C4 CLR . . . I 3 185.94 152.568 198.291 1 153.3 ? C4 CLR 2205 A 1 HETATM 5 C C5 CLR . . . I 3 185.107 152.376 197.038 1 149.65 ? C5 CLR 2205 A 1 HETATM 6 C C6 CLR . . . I 3 184.161 151.446 196.992 1 146.48 ? C6 CLR 2205 A 1 HETATM 7 C C7 CLR . . . I 3 183.325 151.118 195.793 1 146.27 ? C7 CLR 2205 A 1 HETATM 8 C C8 CLR . . . I 3 183.796 151.814 194.518 1 140.87 ? C8 CLR 2205 A 1 HETATM 9 C C9 CLR . . . I 3 184.247 153.252 194.847 1 143.72 ? C9 CLR 2205 A 1 HETATM 10 C C10 CLR . . . I 3 185.446 153.271 195.845 1 151.83 ? C10 CLR 2205 A 1 HETATM 11 C C11 CLR . . . I 3 184.466 154.117 193.591 1 146.79 ? C11 CLR 2205 A 1 HETATM 12 C C12 CLR . . . I 3 183.332 154.028 192.561 1 145.44 ? C12 CLR 2205 A 1 HETATM 13 C C13 CLR . . . I 3 183.024 152.579 192.169 1 141.72 ? C13 CLR 2205 A 1 HETATM 14 C C14 CLR . . . I 3 182.683 151.839 193.479 1 140.84 ? C14 CLR 2205 A 1 HETATM 15 C C15 CLR . . . I 3 182.069 150.517 193.024 1 142.78 ? C15 CLR 2205 A 1 HETATM 16 C C16 CLR . . . I 3 181.359 150.867 191.701 1 143.64 ? C16 CLR 2205 A 1 HETATM 17 C C17 CLR . . . I 3 181.705 152.347 191.374 1 142.09 ? C17 CLR 2205 A 1 HETATM 18 C C18 CLR . . . I 3 184.211 151.959 191.407 1 143.95 ? C18 CLR 2205 A 1 HETATM 19 C C19 CLR . . . I 3 186.747 152.73 195.214 1 156.96 ? C19 CLR 2205 A 1 HETATM 20 C C20 CLR . . . I 3 181.663 152.67 189.867 1 141.75 ? C20 CLR 2205 A 1 HETATM 21 C C21 CLR . . . I 3 181.807 154.168 189.591 1 141.91 ? C21 CLR 2205 A 1 HETATM 22 C C22 CLR . . . I 3 180.387 152.107 189.211 1 148.65 ? C22 CLR 2205 A 1 HETATM 23 C C23 CLR . . . I 3 180.598 150.959 188.239 1 152.67 ? C23 CLR 2205 A 1 HETATM 24 C C24 CLR . . . I 3 179.721 151.036 187.003 1 156.82 ? C24 CLR 2205 A 1 HETATM 25 C C25 CLR . . . I 3 180.321 151.75 185.779 1 157.11 ? C25 CLR 2205 A 1 HETATM 26 C C26 CLR . . . I 3 180.929 153.102 186.134 1 158.06 ? C26 CLR 2205 A 1 HETATM 27 C C27 CLR . . . I 3 179.279 151.924 184.686 1 157.52 ? C27 CLR 2205 A 1 HETATM 28 O O1 CLR . . . I 3 186.905 154.172 199.852 1 150.15 ? O1 CLR 2205 A 1 # _model_server_stats.io_time_ms 26 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 28 #