data_7TYF # _model_server_result.job_id obEQhHZ9CECh1SWmSf0LWw _model_server_result.datetime_utc '2025-08-31 16:34:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7tyf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":505}' # _entry.id 7TYF # _exptl.entry_id 7TYF _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 486.726 _entity.id 10 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CHOLESTEROL HEMISUCCINATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7TYF _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7TYF _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details heptameric _pdbx_struct_assembly.oligomeric_count 7 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 10 L N N ? 10 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 C SG CYS 41 E CYS 40 1_555 C SG CYS 73 E CYS 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf2 C SG CYS 58 E CYS 57 1_555 C SG CYS 105 E CYS 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf3 E SG CYS 22 N CYS 22 1_555 E SG CYS 96 N CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf4 E SG CYS 99 N CYS 99 1_555 E SG CYS 107 N CYS 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf5 F SG CYS 2 P CYS 2 1_555 F SG CYS 7 P CYS 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf6 G SG CYS 63 R CYS 55 1_555 G SG CYS 89 R CYS 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf7 G SG CYS 80 R CYS 72 1_555 G SG CYS 120 R CYS 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf8 G SG CYS 103 R CYS 95 1_555 G SG CYS 142 R CYS 134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf9 G SG CYS 227 R CYS 219 1_555 G SG CYS 297 R CYS 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? covale ? covale1 F C TYR 37 P TYR 37 1_555 F N NH2 38 P NH2 38 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale2 G ND2 ASN 81 R ASN 73 1_555 H C1 NAG . R NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale3 G ND2 ASN 138 R ASN 130 1_555 I C1 NAG . R NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? # _chem_comp.formula 'C31 H50 O4' _chem_comp.formula_weight 486.726 _chem_comp.id Y01 _chem_comp.mon_nstd_flag . _chem_comp.name 'CHOLESTEROL HEMISUCCINATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAA CBA Y01 sing 725 n n CBA CAB Y01 sing 726 n n CBA CAN Y01 sing 727 n n CAN CAJ Y01 sing 728 n n CAJ CAO Y01 sing 729 n n CAO CBB Y01 sing 730 n n CBB CAC Y01 sing 731 n n CBB CBE Y01 sing 732 n n CBE CAP Y01 sing 733 n n CBE CBI Y01 sing 734 n n CAP CAQ Y01 sing 735 n n CAQ CBG Y01 sing 736 n n CBG CBI Y01 sing 737 n n CBG CBD Y01 sing 738 n n CBI CAE Y01 sing 739 n n CBI CAU Y01 sing 740 n n CAU CAS Y01 sing 741 n n CAS CBF Y01 sing 742 n n CBF CBD Y01 sing 743 n n CBF CBH Y01 sing 744 n n CBD CAK Y01 sing 745 n n CAK CAI Y01 sing 746 n n CAI CAZ Y01 doub 747 n n CAZ CAV Y01 sing 748 n n CAZ CBH Y01 sing 749 n n CAV CBC Y01 sing 750 n n CBH CAD Y01 sing 751 n n CBH CAT Y01 sing 752 n n CAT CAR Y01 sing 753 n n CAR CBC Y01 sing 754 n n CBC OAW Y01 sing 755 n n OAW CAY Y01 sing 756 n n CAY OAG Y01 doub 757 n n CAY CAM Y01 sing 758 n n CAM CAL Y01 sing 759 n n CAL CAX Y01 sing 760 n n CAX OAH Y01 sing 761 n n CAX OAF Y01 doub 762 n n CAA HAA1 Y01 sing 763 n n CAA HAA2 Y01 sing 764 n n CAA HAA3 Y01 sing 765 n n CBA HBA Y01 sing 766 n n CAB HAB1 Y01 sing 767 n n CAB HAB2 Y01 sing 768 n n CAB HAB3 Y01 sing 769 n n CAN HAN1 Y01 sing 770 n n CAN HAN2 Y01 sing 771 n n CAJ HAJ1 Y01 sing 772 n n CAJ HAJ2 Y01 sing 773 n n CAO HAO1 Y01 sing 774 n n CAO HAO2 Y01 sing 775 n n CBB HBB Y01 sing 776 n n CAC HAC1 Y01 sing 777 n n CAC HAC2 Y01 sing 778 n n CAC HAC3 Y01 sing 779 n n CBE HBE Y01 sing 780 n n CAP HAP1 Y01 sing 781 n n CAP HAP2 Y01 sing 782 n n CAQ HAQ1 Y01 sing 783 n n CAQ HAQ2 Y01 sing 784 n n CBG HBG Y01 sing 785 n n CBD HBD Y01 sing 786 n n CAE HAE1 Y01 sing 787 n n CAE HAE2 Y01 sing 788 n n CAE HAE3 Y01 sing 789 n n CAU HAU1 Y01 sing 790 n n CAU HAU2 Y01 sing 791 n n CAS HAS1 Y01 sing 792 n n CAS HAS2 Y01 sing 793 n n CBF HBF Y01 sing 794 n n CAK HAK1 Y01 sing 795 n n CAK HAK2 Y01 sing 796 n n CAI HAI Y01 sing 797 n n CAV HAV1 Y01 sing 798 n n CAV HAV2 Y01 sing 799 n n CBC HBC Y01 sing 800 n n CAD HAD1 Y01 sing 801 n n CAD HAD2 Y01 sing 802 n n CAD HAD3 Y01 sing 803 n n CAT HAT1 Y01 sing 804 n n CAT HAT2 Y01 sing 805 n n CAR HAR1 Y01 sing 806 n n CAR HAR2 Y01 sing 807 n n CAM HAM1 Y01 sing 808 n n CAM HAM2 Y01 sing 809 n n CAL HAL1 Y01 sing 810 n n CAL HAL2 Y01 sing 811 n n OAH HAH Y01 sing 812 n n # _atom_sites.entry_id 7TYF _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code H 8 NAG R 1 501 504 NAG NAG . I 8 NAG R 1 502 505 NAG NAG . J 9 PLM R 1 503 1 PLM PLM . K 9 PLM R 1 504 2 PLM PLM . L 10 Y01 R 1 505 3 Y01 Y01 . M 10 Y01 R 1 506 4 Y01 Y01 . N 9 PLM R 1 507 7 PLM PLM . O 9 PLM R 1 508 8 PLM PLM . P 9 PLM R 1 509 11 PLM PLM . Q 11 P42 R 1 510 15 P42 P42 . R 9 PLM R 1 511 16 PLM PLM . S 9 PLM R 1 512 17 PLM PLM . T 9 PLM R 1 513 18 PLM PLM . U 12 PTY R 1 514 19 PTY PTY . V 9 PLM R 1 515 20 PLM PLM . W 13 HOH A 1 401 36 HOH HOH . W 13 HOH A 2 402 2 HOH HOH . W 13 HOH A 3 403 33 HOH HOH . W 13 HOH A 4 404 32 HOH HOH . W 13 HOH A 5 405 37 HOH HOH . W 13 HOH A 6 406 75 HOH HOH . W 13 HOH A 7 407 38 HOH HOH . W 13 HOH A 8 408 88 HOH HOH . W 13 HOH A 9 409 40 HOH HOH . W 13 HOH A 10 410 30 HOH HOH . W 13 HOH A 11 411 35 HOH HOH . W 13 HOH A 12 412 24 HOH HOH . W 13 HOH A 13 413 31 HOH HOH . X 13 HOH B 1 401 54 HOH HOH . X 13 HOH B 2 402 65 HOH HOH . X 13 HOH B 3 403 68 HOH HOH . X 13 HOH B 4 404 51 HOH HOH . X 13 HOH B 5 405 72 HOH HOH . X 13 HOH B 6 406 1 HOH HOH . X 13 HOH B 7 407 43 HOH HOH . X 13 HOH B 8 408 47 HOH HOH . X 13 HOH B 9 409 70 HOH HOH . X 13 HOH B 10 410 44 HOH HOH . X 13 HOH B 11 411 56 HOH HOH . X 13 HOH B 12 412 45 HOH HOH . X 13 HOH B 13 413 69 HOH HOH . X 13 HOH B 14 414 39 HOH HOH . X 13 HOH B 15 415 64 HOH HOH . X 13 HOH B 16 416 42 HOH HOH . X 13 HOH B 17 417 49 HOH HOH . X 13 HOH B 18 418 46 HOH HOH . X 13 HOH B 19 419 63 HOH HOH . X 13 HOH B 20 420 66 HOH HOH . X 13 HOH B 21 421 61 HOH HOH . X 13 HOH B 22 422 71 HOH HOH . X 13 HOH B 23 423 58 HOH HOH . X 13 HOH B 24 424 67 HOH HOH . X 13 HOH B 25 425 73 HOH HOH . X 13 HOH B 26 426 50 HOH HOH . X 13 HOH B 27 427 62 HOH HOH . X 13 HOH B 28 428 41 HOH HOH . X 13 HOH B 29 429 55 HOH HOH . X 13 HOH B 30 430 48 HOH HOH . X 13 HOH B 31 431 52 HOH HOH . X 13 HOH B 32 432 59 HOH HOH . X 13 HOH B 33 433 53 HOH HOH . X 13 HOH B 34 434 57 HOH HOH . X 13 HOH B 35 435 74 HOH HOH . X 13 HOH B 36 436 60 HOH HOH . Y 13 HOH N 1 201 29 HOH HOH . Y 13 HOH N 2 202 6 HOH HOH . Y 13 HOH N 3 203 4 HOH HOH . Y 13 HOH N 4 204 3 HOH HOH . Y 13 HOH N 5 205 27 HOH HOH . Y 13 HOH N 6 206 26 HOH HOH . Y 13 HOH N 7 207 28 HOH HOH . Y 13 HOH N 8 208 5 HOH HOH . Z 13 HOH P 1 101 18 HOH HOH . Z 13 HOH P 2 102 8 HOH HOH . Z 13 HOH P 3 103 86 HOH HOH . Z 13 HOH P 4 104 76 HOH HOH . Z 13 HOH P 5 105 11 HOH HOH . Z 13 HOH P 6 106 15 HOH HOH . AA 13 HOH R 1 601 79 HOH HOH . AA 13 HOH R 2 602 21 HOH HOH . AA 13 HOH R 3 603 85 HOH HOH . AA 13 HOH R 4 604 82 HOH HOH . AA 13 HOH R 5 605 89 HOH HOH . AA 13 HOH R 6 606 22 HOH HOH . AA 13 HOH R 7 607 83 HOH HOH . AA 13 HOH R 8 608 14 HOH HOH . AA 13 HOH R 9 609 23 HOH HOH . AA 13 HOH R 10 610 25 HOH HOH . AA 13 HOH R 11 611 16 HOH HOH . AA 13 HOH R 12 612 80 HOH HOH . AA 13 HOH R 13 613 87 HOH HOH . AA 13 HOH R 14 614 7 HOH HOH . AA 13 HOH R 15 615 10 HOH HOH . AA 13 HOH R 16 616 78 HOH HOH . AA 13 HOH R 17 617 77 HOH HOH . AA 13 HOH R 18 618 20 HOH HOH . AA 13 HOH R 19 619 84 HOH HOH . AA 13 HOH R 20 620 81 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA Y01 . . . L 10 125.257 100.945 100.13 1 83.44 ? CAA Y01 505 R 1 HETATM 2 C CBA Y01 . . . L 10 125.5 102.34 100.686 1 83.44 ? CBA Y01 505 R 1 HETATM 3 C CAB Y01 . . . L 10 126.99 102.637 100.755 1 83.44 ? CAB Y01 505 R 1 HETATM 4 C CAN Y01 . . . L 10 124.829 102.517 102.047 1 83.44 ? CAN Y01 505 R 1 HETATM 5 C CAJ Y01 . . . L 10 123.322 102.455 102.042 1 83.44 ? CAJ Y01 505 R 1 HETATM 6 C CAO Y01 . . . L 10 122.725 102.546 103.424 1 83.44 ? CAO Y01 505 R 1 HETATM 7 C CBB Y01 . . . L 10 121.201 102.738 103.474 1 83.44 ? CBB Y01 505 R 1 HETATM 8 C CAC Y01 . . . L 10 120.492 101.541 102.847 1 83.44 ? CAC Y01 505 R 1 HETATM 9 C CBE Y01 . . . L 10 120.752 103.014 104.921 1 83.44 ? CBE Y01 505 R 1 HETATM 10 C CAP Y01 . . . L 10 121.821 103.811 105.718 1 83.44 ? CAP Y01 505 R 1 HETATM 11 C CAQ Y01 . . . L 10 121.06 104.765 106.656 1 83.44 ? CAQ Y01 505 R 1 HETATM 12 C CBG Y01 . . . L 10 119.65 104.189 106.662 1 83.44 ? CBG Y01 505 R 1 HETATM 13 C CBI Y01 . . . L 10 119.426 103.787 105.191 1 83.44 ? CBI Y01 505 R 1 HETATM 14 C CAE Y01 . . . L 10 119.335 105.01 104.265 1 83.44 ? CAE Y01 505 R 1 HETATM 15 C CAU Y01 . . . L 10 118.126 102.977 105.152 1 83.44 ? CAU Y01 505 R 1 HETATM 16 C CAS Y01 . . . L 10 116.95 103.782 105.718 1 83.44 ? CAS Y01 505 R 1 HETATM 17 C CBF Y01 . . . L 10 117.193 104.264 107.157 1 83.44 ? CBF Y01 505 R 1 HETATM 18 C CBD Y01 . . . L 10 118.532 105.013 107.286 1 83.44 ? CBD Y01 505 R 1 HETATM 19 C CAK Y01 . . . L 10 118.836 105.283 108.756 1 83.44 ? CAK Y01 505 R 1 HETATM 20 C CAI Y01 . . . L 10 117.635 105.749 109.514 1 83.44 ? CAI Y01 505 R 1 HETATM 21 C CAZ Y01 . . . L 10 116.393 105.727 109.054 1 83.44 ? CAZ Y01 505 R 1 HETATM 22 C CAV Y01 . . . L 10 115.26 106.317 109.863 1 83.44 ? CAV Y01 505 R 1 HETATM 23 C CBH Y01 . . . L 10 115.997 105.077 107.732 1 83.44 ? CBH Y01 505 R 1 HETATM 24 C CAD Y01 . . . L 10 115.547 106.194 106.773 1 83.44 ? CAD Y01 505 R 1 HETATM 25 C CAT Y01 . . . L 10 114.817 104.114 108.008 1 83.44 ? CAT Y01 505 R 1 HETATM 26 C CAR Y01 . . . L 10 113.691 104.728 108.844 1 83.44 ? CAR Y01 505 R 1 HETATM 27 C CBC Y01 . . . L 10 114.215 105.269 110.146 1 83.44 ? CBC Y01 505 R 1 HETATM 28 O OAW Y01 . . . L 10 113.144 105.913 110.896 1 83.44 ? OAW Y01 505 R 1 HETATM 29 C CAY Y01 . . . L 10 112.36 105.153 111.652 1 83.44 ? CAY Y01 505 R 1 HETATM 30 O OAG Y01 . . . L 10 112.391 103.956 111.653 1 83.44 ? OAG Y01 505 R 1 HETATM 31 C CAM Y01 . . . L 10 111.462 105.978 112.53 1 83.44 ? CAM Y01 505 R 1 HETATM 32 C CAL Y01 . . . L 10 112.13 107.097 113.307 1 83.44 ? CAL Y01 505 R 1 HETATM 33 C CAX Y01 . . . L 10 113.301 106.68 114.182 1 83.44 ? CAX Y01 505 R 1 HETATM 34 O OAH Y01 . . . L 10 113.195 106.826 115.416 1 83.44 ? OAH Y01 505 R 1 HETATM 35 O OAF Y01 . . . L 10 114.322 106.226 113.628 1 83.44 ? OAF Y01 505 R 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 394 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 35 #