data_7TYN # _model_server_result.job_id '_StV4QL-Q_P8XgJJBcGwdA' _model_server_result.datetime_utc '2024-11-21 23:19:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7tyn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":503}' # _entry.id 7TYN # _exptl.entry_id 7TYN _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 766.124 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S)-2-{[(1R)-1-hydroxyhexadecyl]oxy}-3-{[(1R)-1-hydroxyoctadecyl]oxy}propyl 2-(trimethylammonio)ethyl phosphate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7TYN _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7TYN _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 8 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 1 P CYS 1 1_555 A SG CYS 7 P CYS 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 B SG CYS 63 R CYS 55 1_555 B SG CYS 89 R CYS 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf3 B SG CYS 80 R CYS 72 1_555 B SG CYS 120 R CYS 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 B SG CYS 103 R CYS 95 1_555 B SG CYS 142 R CYS 134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf5 B SG CYS 227 R CYS 219 1_555 B SG CYS 297 R CYS 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf6 F SG CYS 22 N CYS 22 1_555 F SG CYS 96 N CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf7 F SG CYS 99 N CYS 99 1_555 F SG CYS 107 N CYS 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? covale ? covale1 A C PRO 32 P PRO 32 1_555 A N NH2 33 P NH2 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale2 B ND2 ASN 81 R ASN 73 1_555 H C1 NAG . R NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale3 B ND2 ASN 138 R ASN 130 1_555 G C1 NAG . R NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? # _chem_comp.formula 'C42 H88 N O8 P' _chem_comp.formula_weight 766.124 _chem_comp.id P42 _chem_comp.mon_nstd_flag . _chem_comp.name '(2S)-2-{[(1R)-1-hydroxyhexadecyl]oxy}-3-{[(1R)-1-hydroxyoctadecyl]oxy}propyl 2-(trimethylammonio)ethyl phosphate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Stearoyl-2-Palmitoyl-sn-Glycero-3-Phosphocholine # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C4 H4 P42 sing 267 n n C4 H4A P42 sing 268 n n C5 C4 P42 sing 269 n n C5 H5 P42 sing 270 n n C5 H5A P42 sing 271 n n C6 N P42 sing 272 n n C6 H6 P42 sing 273 n n C6 H6A P42 sing 274 n n C6 H6B P42 sing 275 n n C7 N P42 sing 276 n n C7 H7 P42 sing 277 n n C7 H7A P42 sing 278 n n C7 H7B P42 sing 279 n n C8 N P42 sing 280 n n C8 H8 P42 sing 281 n n C8 H8A P42 sing 282 n n C8 H8B P42 sing 283 n n CBX CBV P42 sing 284 n n CBX HBX P42 sing 285 n n CBX HBXA P42 sing 286 n n CBV CBS P42 sing 287 n n CBV HBV P42 sing 288 n n CBS CBH P42 sing 289 n n CBS HBS P42 sing 290 n n CBS HBSA P42 sing 291 n n CBH CAQ P42 sing 292 n n CBH HBH P42 sing 293 n n CBH HBHA P42 sing 294 n n CAQ HAQ P42 sing 295 n n CAQ HAQA P42 sing 296 n n CAP CAQ P42 sing 297 n n CAP CAO P42 sing 298 n n CAP HAP P42 sing 299 n n CAP HAPA P42 sing 300 n n CAO HAO P42 sing 301 n n CAO HAOA P42 sing 302 n n CAN CAO P42 sing 303 n n CAN CAM P42 sing 304 n n CAN HAN P42 sing 305 n n CAN HANA P42 sing 306 n n CAM CAL P42 sing 307 n n CAM HAM P42 sing 308 n n CAL CAK P42 sing 309 n n CAL HAL P42 sing 310 n n CAK HAK P42 sing 311 n n CAK HAKA P42 sing 312 n n CAJ CAK P42 sing 313 n n CAJ CAI P42 sing 314 n n CAJ HAJ P42 sing 315 n n CAJ HAJA P42 sing 316 n n CAI HAI P42 sing 317 n n CAI HAIA P42 sing 318 n n CAH CAI P42 sing 319 n n CAH HAH P42 sing 320 n n CAG CAH P42 sing 321 n n CAG CAF P42 sing 322 n n CAG HAG P42 sing 323 n n CAF CAE P42 sing 324 n n CAF HAF P42 sing 325 n n CAF HAFA P42 sing 326 n n CAE HAE P42 sing 327 n n CAE HAEA P42 sing 328 n n CAD CAE P42 sing 329 n n CAD OAA P42 sing 330 n n CAD HAD P42 sing 331 n n OAA HOAA P42 sing 332 n n OAC CAD P42 sing 333 n n CAB OAC P42 sing 334 n n CAB HAB P42 sing 335 n n CAB HABA P42 sing 336 n n CBE CAB P42 sing 337 n n CBE OBD P42 sing 338 n n CBE HBE P42 sing 339 n n CBK CBE P42 sing 340 n n CBK HBK P42 sing 341 n n CBK HBKA P42 sing 342 n n OBL CBK P42 sing 343 n n PBM OBL P42 sing 344 n n PBM OBF P42 sing 345 n n OBU PBM P42 doub 346 n n OBN C4 P42 sing 347 n n OBN PBM P42 sing 348 n n CBC OBD P42 sing 349 n n CBC CBB P42 sing 350 n n CBC HBC P42 sing 351 n n OBJ CBC P42 sing 352 n n OBJ HOBJ P42 sing 353 n n CBB HBB P42 sing 354 n n CBB HBBA P42 sing 355 n n CBA CBB P42 sing 356 n n CBA CAZ P42 sing 357 n n CBA HBA P42 sing 358 n n CAZ HAZ P42 sing 359 n n CAY CAZ P42 sing 360 n n CAY CAX P42 sing 361 n n CAY HAY P42 sing 362 n n CAY HAYA P42 sing 363 n n CAX HAX P42 sing 364 n n CAX HAXA P42 sing 365 n n CAW CAX P42 sing 366 n n CAW CAV P42 sing 367 n n CAW HAW P42 sing 368 n n CAW HAWA P42 sing 369 n n CAV CAU P42 sing 370 n n CAV HAV P42 sing 371 n n CAV HAVA P42 sing 372 n n CAU CAT P42 sing 373 n n CAU HAU P42 sing 374 n n CAU HAUA P42 sing 375 n n CAT CAS P42 sing 376 n n CAT HAT P42 sing 377 n n CAT HATA P42 sing 378 n n CAS CAR P42 sing 379 n n CAS HAS P42 sing 380 n n CAR CBI P42 sing 381 n n CAR HAR P42 sing 382 n n CBI CBT P42 sing 383 n n CBI HBI P42 sing 384 n n CBI HBIA P42 sing 385 n n CBT CBW P42 sing 386 n n CBT HBT P42 sing 387 n n CBT HBTA P42 sing 388 n n CBW HBW P42 sing 389 n n CBY CBW P42 sing 390 n n CBY HBY P42 sing 391 n n CBY HBYA P42 sing 392 n n N C5 P42 sing 393 n n CBX H77 P42 sing 394 n n CBV H78 P42 sing 395 n n CAM H79 P42 sing 396 n n CAL H80 P42 sing 397 n n CAH H81 P42 sing 398 n n CAG H82 P42 sing 399 n n CBA H83 P42 sing 400 n n CAZ H84 P42 sing 401 n n CAS H85 P42 sing 402 n n CAR H86 P42 sing 403 n n CBW H87 P42 sing 404 n n CBY H88 P42 sing 405 n n # _atom_sites.entry_id 7TYN _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 7 NAG R 1 501 410 NAG NAG . H 7 NAG R 1 502 411 NAG NAG . I 8 P42 R 1 503 411 P42 P42 . J 9 PLM R 1 504 412 PLM PLM . K 9 PLM R 1 505 413 PLM PLM . L 9 PLM R 1 506 414 PLM PLM . M 10 Y01 R 1 507 415 Y01 Y01 . N 9 PLM R 1 508 417 PLM PLM . O 9 PLM R 1 509 418 PLM PLM . P 9 PLM R 1 510 419 PLM PLM . Q 9 PLM R 1 511 420 PLM PLM . R 9 PLM R 1 512 421 PLM PLM . S 9 PLM R 1 513 422 PLM PLM . T 9 PLM R 1 514 423 PLM PLM . U 9 PLM R 1 515 424 PLM PLM . V 9 PLM R 1 516 425 PLM PLM . W 9 PLM R 1 517 426 PLM PLM . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 P42 . . . I 8 116.141 139.35 81.99 1 56.42 ? C4 P42 503 R 1 HETATM 2 C C5 P42 . . . I 8 115.092 140.411 82.216 1 56.42 ? C5 P42 503 R 1 HETATM 3 C C6 P42 . . . I 8 112.881 141.376 81.739 1 56.42 ? C6 P42 503 R 1 HETATM 4 C C7 P42 . . . I 8 114.158 140.372 79.942 1 56.42 ? C7 P42 503 R 1 HETATM 5 C C8 P42 . . . I 8 113.176 138.973 81.659 1 56.42 ? C8 P42 503 R 1 HETATM 6 C CBX P42 . . . I 8 115.198 111.923 91.664 1 56.42 ? CBX P42 503 R 1 HETATM 7 C CBV P42 . . . I 8 116.332 112.902 91.47 1 56.42 ? CBV P42 503 R 1 HETATM 8 C CBS P42 . . . I 8 115.908 114.192 90.817 1 56.42 ? CBS P42 503 R 1 HETATM 9 C CBH P42 . . . I 8 117.016 115.2 90.629 1 56.42 ? CBH P42 503 R 1 HETATM 10 C CAQ P42 . . . I 8 116.559 116.509 90.034 1 56.42 ? CAQ P42 503 R 1 HETATM 11 C CAP P42 . . . I 8 117.637 117.56 89.923 1 56.42 ? CAP P42 503 R 1 HETATM 12 C CAO P42 . . . I 8 117.128 118.905 89.468 1 56.42 ? CAO P42 503 R 1 HETATM 13 C CAN P42 . . . I 8 118.164 120.002 89.438 1 56.42 ? CAN P42 503 R 1 HETATM 14 C CAM P42 . . . I 8 117.584 121.368 89.162 1 56.42 ? CAM P42 503 R 1 HETATM 15 C CAL P42 . . . I 8 118.588 122.493 89.109 1 56.42 ? CAL P42 503 R 1 HETATM 16 C CAK P42 . . . I 8 117.954 123.853 88.952 1 56.42 ? CAK P42 503 R 1 HETATM 17 C CAJ P42 . . . I 8 118.923 124.994 88.759 1 56.42 ? CAJ P42 503 R 1 HETATM 18 C CAI P42 . . . I 8 118.248 126.335 88.609 1 56.42 ? CAI P42 503 R 1 HETATM 19 C CAH P42 . . . I 8 119.156 127.464 88.192 1 56.42 ? CAH P42 503 R 1 HETATM 20 C CAG P42 . . . I 8 118.427 128.758 87.925 1 56.42 ? CAG P42 503 R 1 HETATM 21 C CAF P42 . . . I 8 119.27 129.835 87.29 1 56.42 ? CAF P42 503 R 1 HETATM 22 C CAE P42 . . . I 8 118.482 131.051 86.87 1 56.42 ? CAE P42 503 R 1 HETATM 23 C CAD P42 . . . I 8 119.351 132.028 86.099 1 56.42 ? CAD P42 503 R 1 HETATM 24 O OAA P42 . . . I 8 120.387 132.514 86.941 1 56.42 ? OAA P42 503 R 1 HETATM 25 O OAC P42 . . . I 8 118.552 133.069 85.585 1 56.42 ? OAC P42 503 R 1 HETATM 26 C CAB P42 . . . I 8 119.271 134.043 84.822 1 56.42 ? CAB P42 503 R 1 HETATM 27 C CBE P42 . . . I 8 118.316 135.106 84.324 1 56.42 ? CBE P42 503 R 1 HETATM 28 C CBK P42 . . . I 8 119.008 136.249 83.615 1 56.42 ? CBK P42 503 R 1 HETATM 29 O OBL P42 . . . I 8 118.057 137.313 83.335 1 56.42 ? OBL P42 503 R 1 HETATM 30 P PBM P42 . . . I 8 118.596 138.698 82.723 1 56.42 ? PBM P42 503 R 1 HETATM 31 O OBF P42 . . . I 8 119.632 139.247 83.665 1 56.42 ? OBF P42 503 R 1 HETATM 32 O OBU P42 . . . I 8 118.939 138.474 81.276 1 56.42 ? OBU P42 503 R 1 HETATM 33 O OBN P42 . . . I 8 117.312 139.66 82.794 1 56.42 ? OBN P42 503 R 1 HETATM 34 O OBD P42 . . . I 8 117.343 134.524 83.435 1 56.42 ? OBD P42 503 R 1 HETATM 35 C CBC P42 . . . I 8 117.729 134.187 82.116 1 56.42 ? CBC P42 503 R 1 HETATM 36 O OBJ P42 . . . I 8 118.692 133.143 82.049 1 56.42 ? OBJ P42 503 R 1 HETATM 37 C CBB P42 . . . I 8 116.484 133.787 81.336 1 56.42 ? CBB P42 503 R 1 HETATM 38 C CBA P42 . . . I 8 115.583 132.87 82.133 1 56.42 ? CBA P42 503 R 1 HETATM 39 C CAZ P42 . . . I 8 116.123 131.488 82.415 1 56.42 ? CAZ P42 503 R 1 HETATM 40 C CAY P42 . . . I 8 115.365 130.741 83.485 1 56.42 ? CAY P42 503 R 1 HETATM 41 C CAX P42 . . . I 8 113.903 130.52 83.183 1 56.42 ? CAX P42 503 R 1 HETATM 42 C CAW P42 . . . I 8 113.093 130.079 84.377 1 56.42 ? CAW P42 503 R 1 HETATM 43 C CAV P42 . . . I 8 111.642 129.792 84.081 1 56.42 ? CAV P42 503 R 1 HETATM 44 C CAU P42 . . . I 8 111.413 128.555 83.25 1 56.42 ? CAU P42 503 R 1 HETATM 45 C CAT P42 . . . I 8 111.941 127.289 83.879 1 56.42 ? CAT P42 503 R 1 HETATM 46 C CAS P42 . . . I 8 111.661 126.036 83.087 1 56.42 ? CAS P42 503 R 1 HETATM 47 C CAR P42 . . . I 8 112.238 124.78 83.693 1 56.42 ? CAR P42 503 R 1 HETATM 48 C CBI P42 . . . I 8 111.767 124.495 85.098 1 56.42 ? CBI P42 503 R 1 HETATM 49 C CBT P42 . . . I 8 112.337 123.231 85.694 1 56.42 ? CBT P42 503 R 1 HETATM 50 C CBW P42 . . . I 8 113.842 123.202 85.763 1 56.42 ? CBW P42 503 R 1 HETATM 51 C CBY P42 . . . I 8 114.398 121.93 86.357 1 56.42 ? CBY P42 503 R 1 HETATM 52 N N P42 . . . I 8 113.828 140.282 81.39 1 56.42 ? N P42 503 R 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 28 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 52 #