data_7TYN # _model_server_result.job_id roeuWUiET3er6NtBRrim6Q _model_server_result.datetime_utc '2024-11-21 22:24:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7tyn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":507}' # _entry.id 7TYN # _exptl.entry_id 7TYN _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 486.726 _entity.id 10 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CHOLESTEROL HEMISUCCINATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7TYN _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7TYN _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 10 _struct_asym.id M _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 1 P CYS 1 1_555 A SG CYS 7 P CYS 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 B SG CYS 63 R CYS 55 1_555 B SG CYS 89 R CYS 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf3 B SG CYS 80 R CYS 72 1_555 B SG CYS 120 R CYS 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 B SG CYS 103 R CYS 95 1_555 B SG CYS 142 R CYS 134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf5 B SG CYS 227 R CYS 219 1_555 B SG CYS 297 R CYS 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf6 F SG CYS 22 N CYS 22 1_555 F SG CYS 96 N CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf7 F SG CYS 99 N CYS 99 1_555 F SG CYS 107 N CYS 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? covale ? covale1 A C PRO 32 P PRO 32 1_555 A N NH2 33 P NH2 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale2 B ND2 ASN 81 R ASN 73 1_555 H C1 NAG . R NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale3 B ND2 ASN 138 R ASN 130 1_555 G C1 NAG . R NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? # _chem_comp.formula 'C31 H50 O4' _chem_comp.formula_weight 486.726 _chem_comp.id Y01 _chem_comp.mon_nstd_flag . _chem_comp.name 'CHOLESTEROL HEMISUCCINATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAA CBA Y01 sing 594 n n CBA CAB Y01 sing 595 n n CBA CAN Y01 sing 596 n n CAN CAJ Y01 sing 597 n n CAJ CAO Y01 sing 598 n n CAO CBB Y01 sing 599 n n CBB CAC Y01 sing 600 n n CBB CBE Y01 sing 601 n n CBE CAP Y01 sing 602 n n CBE CBI Y01 sing 603 n n CAP CAQ Y01 sing 604 n n CAQ CBG Y01 sing 605 n n CBG CBI Y01 sing 606 n n CBG CBD Y01 sing 607 n n CBI CAE Y01 sing 608 n n CBI CAU Y01 sing 609 n n CAU CAS Y01 sing 610 n n CAS CBF Y01 sing 611 n n CBF CBD Y01 sing 612 n n CBF CBH Y01 sing 613 n n CBD CAK Y01 sing 614 n n CAK CAI Y01 sing 615 n n CAI CAZ Y01 doub 616 n n CAZ CAV Y01 sing 617 n n CAZ CBH Y01 sing 618 n n CAV CBC Y01 sing 619 n n CBH CAD Y01 sing 620 n n CBH CAT Y01 sing 621 n n CAT CAR Y01 sing 622 n n CAR CBC Y01 sing 623 n n CBC OAW Y01 sing 624 n n OAW CAY Y01 sing 625 n n CAY OAG Y01 doub 626 n n CAY CAM Y01 sing 627 n n CAM CAL Y01 sing 628 n n CAL CAX Y01 sing 629 n n CAX OAH Y01 sing 630 n n CAX OAF Y01 doub 631 n n CAA HAA1 Y01 sing 632 n n CAA HAA2 Y01 sing 633 n n CAA HAA3 Y01 sing 634 n n CBA HBA Y01 sing 635 n n CAB HAB1 Y01 sing 636 n n CAB HAB2 Y01 sing 637 n n CAB HAB3 Y01 sing 638 n n CAN HAN1 Y01 sing 639 n n CAN HAN2 Y01 sing 640 n n CAJ HAJ1 Y01 sing 641 n n CAJ HAJ2 Y01 sing 642 n n CAO HAO1 Y01 sing 643 n n CAO HAO2 Y01 sing 644 n n CBB HBB Y01 sing 645 n n CAC HAC1 Y01 sing 646 n n CAC HAC2 Y01 sing 647 n n CAC HAC3 Y01 sing 648 n n CBE HBE Y01 sing 649 n n CAP HAP1 Y01 sing 650 n n CAP HAP2 Y01 sing 651 n n CAQ HAQ1 Y01 sing 652 n n CAQ HAQ2 Y01 sing 653 n n CBG HBG Y01 sing 654 n n CBD HBD Y01 sing 655 n n CAE HAE1 Y01 sing 656 n n CAE HAE2 Y01 sing 657 n n CAE HAE3 Y01 sing 658 n n CAU HAU1 Y01 sing 659 n n CAU HAU2 Y01 sing 660 n n CAS HAS1 Y01 sing 661 n n CAS HAS2 Y01 sing 662 n n CBF HBF Y01 sing 663 n n CAK HAK1 Y01 sing 664 n n CAK HAK2 Y01 sing 665 n n CAI HAI Y01 sing 666 n n CAV HAV1 Y01 sing 667 n n CAV HAV2 Y01 sing 668 n n CBC HBC Y01 sing 669 n n CAD HAD1 Y01 sing 670 n n CAD HAD2 Y01 sing 671 n n CAD HAD3 Y01 sing 672 n n CAT HAT1 Y01 sing 673 n n CAT HAT2 Y01 sing 674 n n CAR HAR1 Y01 sing 675 n n CAR HAR2 Y01 sing 676 n n CAM HAM1 Y01 sing 677 n n CAM HAM2 Y01 sing 678 n n CAL HAL1 Y01 sing 679 n n CAL HAL2 Y01 sing 680 n n OAH HAH Y01 sing 681 n n # _atom_sites.entry_id 7TYN _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 7 NAG R 1 501 410 NAG NAG . H 7 NAG R 1 502 411 NAG NAG . I 8 P42 R 1 503 411 P42 P42 . J 9 PLM R 1 504 412 PLM PLM . K 9 PLM R 1 505 413 PLM PLM . L 9 PLM R 1 506 414 PLM PLM . M 10 Y01 R 1 507 415 Y01 Y01 . N 9 PLM R 1 508 417 PLM PLM . O 9 PLM R 1 509 418 PLM PLM . P 9 PLM R 1 510 419 PLM PLM . Q 9 PLM R 1 511 420 PLM PLM . R 9 PLM R 1 512 421 PLM PLM . S 9 PLM R 1 513 422 PLM PLM . T 9 PLM R 1 514 423 PLM PLM . U 9 PLM R 1 515 424 PLM PLM . V 9 PLM R 1 516 425 PLM PLM . W 9 PLM R 1 517 426 PLM PLM . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA Y01 . . . M 10 92.349 125.303 96.99 1 51.04 ? CAA Y01 507 R 1 HETATM 2 C CBA Y01 . . . M 10 92.141 126.676 97.611 1 51.04 ? CBA Y01 507 R 1 HETATM 3 C CAB Y01 . . . M 10 93.48 127.322 97.935 1 51.04 ? CAB Y01 507 R 1 HETATM 4 C CAN Y01 . . . M 10 91.239 126.615 98.849 1 51.04 ? CAN Y01 507 R 1 HETATM 5 C CAJ Y01 . . . M 10 91.792 125.859 100.035 1 51.04 ? CAJ Y01 507 R 1 HETATM 6 C CAO Y01 . . . M 10 91.227 124.466 100.186 1 51.04 ? CAO Y01 507 R 1 HETATM 7 C CBB Y01 . . . M 10 91.865 123.628 101.303 1 51.04 ? CBB Y01 507 R 1 HETATM 8 C CAC Y01 . . . M 10 91.765 124.367 102.635 1 51.04 ? CAC Y01 507 R 1 HETATM 9 C CBE Y01 . . . M 10 91.245 122.218 101.347 1 51.04 ? CBE Y01 507 R 1 HETATM 10 C CAP Y01 . . . M 10 91.088 121.598 99.932 1 51.04 ? CAP Y01 507 R 1 HETATM 11 C CAQ Y01 . . . M 10 91.241 120.072 100.09 1 51.04 ? CAQ Y01 507 R 1 HETATM 12 C CBG Y01 . . . M 10 91.21 119.856 101.6 1 51.04 ? CBG Y01 507 R 1 HETATM 13 C CBI Y01 . . . M 10 91.949 121.089 102.156 1 51.04 ? CBI Y01 507 R 1 HETATM 14 C CAE Y01 . . . M 10 93.447 121.059 101.812 1 51.04 ? CAE Y01 507 R 1 HETATM 15 C CAU Y01 . . . M 10 91.732 121.081 103.672 1 51.04 ? CAU Y01 507 R 1 HETATM 16 C CAS Y01 . . . M 10 92.256 119.786 104.3 1 51.04 ? CAS Y01 507 R 1 HETATM 17 C CBF Y01 . . . M 10 91.626 118.523 103.692 1 51.04 ? CBF Y01 507 R 1 HETATM 18 C CBD Y01 . . . M 10 91.703 118.525 102.153 1 51.04 ? CBD Y01 507 R 1 HETATM 19 C CAK Y01 . . . M 10 90.88 117.366 101.597 1 51.04 ? CAK Y01 507 R 1 HETATM 20 C CAI Y01 . . . M 10 91.099 116.096 102.356 1 51.04 ? CAI Y01 507 R 1 HETATM 21 C CAZ Y01 . . . M 10 91.749 116.005 103.507 1 51.04 ? CAZ Y01 507 R 1 HETATM 22 C CAV Y01 . . . M 10 92.046 114.659 104.132 1 51.04 ? CAV Y01 507 R 1 HETATM 23 C CBH Y01 . . . M 10 92.212 117.22 104.305 1 51.04 ? CBH Y01 507 R 1 HETATM 24 C CAD Y01 . . . M 10 93.752 117.229 104.296 1 51.04 ? CAD Y01 507 R 1 HETATM 25 C CAT Y01 . . . M 10 91.697 117.061 105.754 1 51.04 ? CAT Y01 507 R 1 HETATM 26 C CAR Y01 . . . M 10 92.024 115.7 106.373 1 51.04 ? CAR Y01 507 R 1 HETATM 27 C CBC Y01 . . . M 10 91.487 114.571 105.535 1 51.04 ? CBC Y01 507 R 1 HETATM 28 O OAW Y01 . . . M 10 91.915 113.302 106.116 1 51.04 ? OAW Y01 507 R 1 HETATM 29 C CAY Y01 . . . M 10 91.306 112.171 105.752 1 51.04 ? CAY Y01 507 R 1 HETATM 30 O OAG Y01 . . . M 10 91.833 111.097 105.799 1 51.04 ? OAG Y01 507 R 1 HETATM 31 C CAM Y01 . . . M 10 89.864 112.382 105.361 1 51.04 ? CAM Y01 507 R 1 HETATM 32 C CAL Y01 . . . M 10 89.132 111.167 104.823 1 51.04 ? CAL Y01 507 R 1 HETATM 33 C CAX Y01 . . . M 10 89.668 110.626 103.508 1 51.04 ? CAX Y01 507 R 1 HETATM 34 O OAH Y01 . . . M 10 89.148 109.595 103.04 1 51.04 ? OAH Y01 507 R 1 HETATM 35 O OAF Y01 . . . M 10 90.598 111.242 102.951 1 51.04 ? OAF Y01 507 R 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 258 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 35 #