data_7TYS # _model_server_result.job_id AS-PhtWK8ChxSGScjGWHbA _model_server_result.datetime_utc '2024-11-30 10:01:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7tys # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"W","auth_seq_id":1602}' # _entry.id 7TYS # _exptl.entry_id 7TYS _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 452.586 _entity.id 9 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description Repaglinide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7TYS _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7TYS _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 9 _struct_asym.id W _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 3 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n F NAG 1 F 1 NAG E 2010 NAG 3 n F NAG 2 F 2 NAG E 2011 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 110 A CYS 110 1_555 A SG CYS 142 A CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 B SG CYS 110 B CYS 110 1_555 B SG CYS 142 B CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf3 C SG CYS 110 C CYS 110 1_555 C SG CYS 142 C CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf4 D SG CYS 110 D CYS 110 1_555 D SG CYS 142 D CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf5 E SG CYS 6 E CYS 6 1_555 E SG CYS 26 E CYS 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? covale ? covale1 E ND2 ASN 10 E ASN 10 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale2 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? metalc ? metalc1 A O THR 130 A THR 130 1_555 I K K . A K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.693 ? metalc ? metalc2 A O ILE 131 A ILE 131 1_555 I K K . A K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.196 ? metalc ? metalc3 A O PHE 133 A PHE 133 1_555 H K K . A K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.843 ? metalc ? metalc4 H K K . A K 402 1_555 B O PHE 133 B PHE 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.672 ? metalc ? metalc5 H K K . A K 402 1_555 C O PHE 133 C PHE 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.638 ? metalc ? metalc6 H K K . A K 402 1_555 D O PHE 133 D PHE 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.703 ? metalc ? metalc7 I K K . A K 403 1_555 B O THR 130 B THR 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.567 ? metalc ? metalc8 I K K . A K 403 1_555 B O ILE 131 B ILE 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.076 ? metalc ? metalc9 I K K . A K 403 1_555 C O THR 130 C THR 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.607 ? metalc ? metalc10 I K K . A K 403 1_555 C O ILE 131 C ILE 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.946 ? metalc ? metalc11 I K K . A K 403 1_555 D O THR 130 D THR 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.59 ? metalc ? metalc12 I K K . A K 403 1_555 D O ILE 131 D ILE 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.175 ? # _chem_comp.formula 'C27 H36 N2 O4' _chem_comp.formula_weight 452.586 _chem_comp.id BJX _chem_comp.mon_nstd_flag . _chem_comp.name Repaglinide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '2-ethoxy-4-[2-({(1S)-3-methyl-1-[2-(piperidin-1-yl)phenyl]butyl}amino)-2-oxoethyl]benzoic acid' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C13 C9 BJX sing 194 n n C12 C9 BJX sing 195 n n C9 C8 BJX sing 196 n n C8 C5 BJX sing 197 n n C11 C15 BJX doub 198 n y C11 C7 BJX sing 199 n y C5 C7 BJX sing 200 n n C5 N1 BJX sing 201 n n O C16 BJX doub 202 n n C15 C14 BJX sing 203 n y C7 C6 BJX doub 204 n y C26 C25 BJX sing 205 n n C25 O1 BJX sing 206 n n C16 N1 BJX sing 207 n n C16 C17 BJX sing 208 n n C N BJX sing 209 n n C C2 BJX sing 210 n n C14 C10 BJX doub 211 n y C6 C10 BJX sing 212 n y C6 N BJX sing 213 n n N C1 BJX sing 214 n n C2 C4 BJX sing 215 n n O1 C21 BJX sing 216 n n C19 C21 BJX doub 217 n y C19 C18 BJX sing 218 n y C17 C18 BJX sing 219 n n C21 C23 BJX sing 220 n y C18 C20 BJX doub 221 n y C4 C3 BJX sing 222 n n C1 C3 BJX sing 223 n n O2 C24 BJX doub 224 n n C20 C22 BJX sing 225 n y C23 C24 BJX sing 226 n n C23 C22 BJX doub 227 n y C24 O3 BJX sing 228 n n C9 H1 BJX sing 229 n n C10 H2 BJX sing 230 n n C11 H3 BJX sing 231 n n C12 H4 BJX sing 232 n n C12 H5 BJX sing 233 n n C12 H6 BJX sing 234 n n C13 H7 BJX sing 235 n n C13 H8 BJX sing 236 n n C13 H9 BJX sing 237 n n C14 H10 BJX sing 238 n n C15 H11 BJX sing 239 n n C17 H12 BJX sing 240 n n C17 H13 BJX sing 241 n n C19 H14 BJX sing 242 n n C20 H15 BJX sing 243 n n C8 H16 BJX sing 244 n n C8 H17 BJX sing 245 n n C5 H18 BJX sing 246 n n C4 H19 BJX sing 247 n n C4 H20 BJX sing 248 n n C3 H21 BJX sing 249 n n C3 H22 BJX sing 250 n n C2 H23 BJX sing 251 n n C2 H24 BJX sing 252 n n C1 H25 BJX sing 253 n n C1 H26 BJX sing 254 n n C H27 BJX sing 255 n n C H28 BJX sing 256 n n C22 H29 BJX sing 257 n n C25 H30 BJX sing 258 n n C25 H31 BJX sing 259 n n C26 H32 BJX sing 260 n n C26 H33 BJX sing 261 n n C26 H34 BJX sing 262 n n N1 H35 BJX sing 263 n n O3 H36 BJX sing 264 n n # _atom_sites.entry_id 7TYS _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 ATP A 1 401 401 ATP ATP . H 5 K A 1 402 500 K K . I 5 K A 1 403 503 K K . J 6 POV A 1 404 505 POV POV . K 7 P5S A 1 405 508 P5S P5S . L 7 P5S A 1 406 507 P5S P5S . M 4 ATP B 1 401 401 ATP ATP . N 6 POV B 1 402 505 POV POV . O 7 P5S B 1 403 506 P5S P5S . P 4 ATP C 1 401 401 ATP ATP . Q 6 POV C 1 402 505 POV POV . R 7 P5S C 1 403 506 P5S P5S . S 4 ATP D 1 401 401 ATP ATP . T 7 P5S D 1 402 505 P5S P5S . U 6 POV D 1 403 506 POV POV . V 8 65I E 1 1601 506 65I PTY . W 9 BJX E 1 1602 2001 BJX BJX . X 4 ATP E 1 1603 2002 ATP ATP . Y 8 65I E 1 1604 2003 65I PTY . Z 8 65I E 1 1605 2004 65I PTY . AA 8 65I E 1 1606 2005 65I PTY . BA 7 P5S E 1 1607 2006 P5S P5S . CA 6 POV E 1 1608 2007 POV POV . DA 8 65I E 1 1609 2008 65I PTY . EA 8 65I E 1 1610 2009 65I PTY . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C9 BJX . . . W 9 223.88 177.138 164.024 1 39.64 ? C9 BJX 1602 E 1 HETATM 2 C C10 BJX . . . W 9 221.558 172.322 165.595 1 49.63 ? C10 BJX 1602 E 1 HETATM 3 C C11 BJX . . . W 9 222.226 173.102 163.003 1 31.94 ? C11 BJX 1602 E 1 HETATM 4 C C12 BJX . . . W 9 224.701 177.569 165.241 1 44.81 ? C12 BJX 1602 E 1 HETATM 5 C C13 BJX . . . W 9 224.671 176.098 163.196 1 38.97 ? C13 BJX 1602 E 1 HETATM 6 C C14 BJX . . . W 9 221.959 171.346 164.655 1 42.47 ? C14 BJX 1602 E 1 HETATM 7 C C15 BJX . . . W 9 222.293 171.739 163.353 1 38.59 ? C15 BJX 1602 E 1 HETATM 8 C C16 BJX . . . W 9 219.408 176.953 163.505 1 42.66 ? C16 BJX 1602 E 1 HETATM 9 C C17 BJX . . . W 9 217.983 176.979 162.94 1 39.05 ? C17 BJX 1602 E 1 HETATM 10 C C18 BJX . . . W 9 217.587 175.558 162.484 1 31.21 ? C18 BJX 1602 E 1 HETATM 11 C C19 BJX . . . W 9 217.646 175.138 161.129 1 30.29 ? C19 BJX 1602 E 1 HETATM 12 C C20 BJX . . . W 9 217.221 174.599 163.444 1 38.26 ? C20 BJX 1602 E 1 HETATM 13 C C8 BJX . . . W 9 222.473 176.62 164.442 1 36.9 ? C8 BJX 1602 E 1 HETATM 14 C C7 BJX . . . W 9 221.845 174.103 163.924 1 34.78 ? C7 BJX 1602 E 1 HETATM 15 C C6 BJX . . . W 9 221.482 173.698 165.261 1 45.8 ? C6 BJX 1602 E 1 HETATM 16 C C5 BJX . . . W 9 221.787 175.602 163.413 1 42.9 ? C5 BJX 1602 E 1 HETATM 17 C C4 BJX . . . W 9 219.551 175.888 168.646 1 49.33 ? C4 BJX 1602 E 1 HETATM 18 C C3 BJX . . . W 9 219.203 176.202 167.191 1 45.15 ? C3 BJX 1602 E 1 HETATM 19 C C2 BJX . . . W 9 220.982 175.368 168.774 1 48.64 ? C2 BJX 1602 E 1 HETATM 20 C C1 BJX . . . W 9 219.598 175.056 166.221 1 40.46 ? C1 BJX 1602 E 1 HETATM 21 O O1 BJX . . . W 9 217.36 173.455 159.376 1 47.73 ? O1 BJX 1602 E 1 HETATM 22 O O2 BJX . . . W 9 217.458 170.531 161.235 1 54 ? O2 BJX 1602 E 1 HETATM 23 N N BJX . . . W 9 221.047 174.695 166.316 1 43.08 ? N BJX 1602 E 1 HETATM 24 C C BJX . . . W 9 221.322 174.262 167.729 1 46.53 ? C BJX 1602 E 1 HETATM 25 O O BJX . . . W 9 219.736 177.77 164.372 1 39.69 ? O BJX 1602 E 1 HETATM 26 C C21 BJX . . . W 9 217.307 173.813 160.751 1 38.92 ? C21 BJX 1602 E 1 HETATM 27 C C22 BJX . . . W 9 216.881 173.281 163.06 1 38.49 ? C22 BJX 1602 E 1 HETATM 28 C C23 BJX . . . W 9 216.918 172.873 161.72 1 37.23 ? C23 BJX 1602 E 1 HETATM 29 C C24 BJX . . . W 9 216.539 171.423 161.342 1 44.5 ? C24 BJX 1602 E 1 HETATM 30 C C25 BJX . . . W 9 218.539 172.765 158.916 1 43.24 ? C25 BJX 1602 E 1 HETATM 31 C C26 BJX . . . W 9 218.164 171.472 158.119 1 38.66 ? C26 BJX 1602 E 1 HETATM 32 N N1 BJX . . . W 9 220.353 175.934 163.054 1 51.08 ? N1 BJX 1602 E 1 HETATM 33 O O3 BJX . . . W 9 215.304 171.106 161.134 1 36.89 ? O3 BJX 1602 E 1 # _model_server_stats.io_time_ms 31 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 29 _model_server_stats.query_time_ms 397 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 33 #