data_7TYS # _model_server_result.job_id QMh6MeYmeaDtQ-ub4_dxrA _model_server_result.datetime_utc '2025-02-18 18:38:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7tys # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Z","auth_seq_id":1605}' # _entry.id 7TYS # _exptl.entry_id 7TYS _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 481.56 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(9R,12R)-15-amino-12-hydroxy-6,12-dioxo-7,11,13-trioxa-12lambda~5~-phosphapentadecan-9-yl undecanoate' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7TYS _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7TYS _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 8 V N N ? 8 Y N N ? 8 Z N N ? 8 AA N N ? 8 DA N N ? 8 EA N N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 3 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n F NAG 1 F 1 NAG E 2010 NAG 3 n F NAG 2 F 2 NAG E 2011 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 110 A CYS 110 1_555 A SG CYS 142 A CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 B SG CYS 110 B CYS 110 1_555 B SG CYS 142 B CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf3 C SG CYS 110 C CYS 110 1_555 C SG CYS 142 C CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf4 D SG CYS 110 D CYS 110 1_555 D SG CYS 142 D CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf5 E SG CYS 6 E CYS 6 1_555 E SG CYS 26 E CYS 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? covale ? covale1 E ND2 ASN 10 E ASN 10 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale2 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? metalc ? metalc1 A O THR 130 A THR 130 1_555 I K K . A K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.693 ? metalc ? metalc2 A O ILE 131 A ILE 131 1_555 I K K . A K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.196 ? metalc ? metalc3 A O PHE 133 A PHE 133 1_555 H K K . A K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.843 ? metalc ? metalc4 H K K . A K 402 1_555 B O PHE 133 B PHE 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.672 ? metalc ? metalc5 H K K . A K 402 1_555 C O PHE 133 C PHE 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.638 ? metalc ? metalc6 H K K . A K 402 1_555 D O PHE 133 D PHE 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.703 ? metalc ? metalc7 I K K . A K 403 1_555 B O THR 130 B THR 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.567 ? metalc ? metalc8 I K K . A K 403 1_555 B O ILE 131 B ILE 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.076 ? metalc ? metalc9 I K K . A K 403 1_555 C O THR 130 C THR 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.607 ? metalc ? metalc10 I K K . A K 403 1_555 C O ILE 131 C ILE 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.946 ? metalc ? metalc11 I K K . A K 403 1_555 D O THR 130 D THR 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.59 ? metalc ? metalc12 I K K . A K 403 1_555 D O ILE 131 D ILE 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.175 ? # _chem_comp.formula 'C22 H44 N O8 P' _chem_comp.formula_weight 481.56 _chem_comp.id 65I _chem_comp.mon_nstd_flag . _chem_comp.name '(9R,12R)-15-amino-12-hydroxy-6,12-dioxo-7,11,13-trioxa-12lambda~5~-phosphapentadecan-9-yl undecanoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N C10 65I sing 1 n n C10 C9 65I sing 2 n n C9 O5 65I sing 3 n n O5 P 65I sing 4 n n O4 P 65I doub 5 n n P O3 65I sing 6 n n P O2 65I sing 7 n n O2 C8 65I sing 8 n n C8 C7 65I sing 9 n n C7 C6 65I sing 10 n n C7 O6 65I sing 11 n n O1 C6 65I sing 12 n n O1 C5 65I sing 13 n n O6 C11 65I sing 14 n n C5 O 65I doub 15 n n C5 C4 65I sing 16 n n C11 O7 65I doub 17 n n C11 C12 65I sing 18 n n C13 C12 65I sing 19 n n C13 C14 65I sing 20 n n C15 C16 65I sing 21 n n C15 C14 65I sing 22 n n C4 C3 65I sing 23 n n C16 C17 65I sing 24 n n C3 C2 65I sing 25 n n C17 C18 65I sing 26 n n C18 C19 65I sing 27 n n C2 C1 65I sing 28 n n C1 C 65I sing 29 n n C19 C20 65I sing 30 n n C20 C21 65I sing 31 n n N H1 65I sing 32 n n N H2 65I sing 33 n n C H4 65I sing 34 n n C H5 65I sing 35 n n C H6 65I sing 36 n n C1 H7 65I sing 37 n n C1 H8 65I sing 38 n n C10 H9 65I sing 39 n n C10 H10 65I sing 40 n n C12 H11 65I sing 41 n n C12 H12 65I sing 42 n n C13 H13 65I sing 43 n n C13 H14 65I sing 44 n n C14 H15 65I sing 45 n n C14 H16 65I sing 46 n n C15 H17 65I sing 47 n n C15 H18 65I sing 48 n n C16 H19 65I sing 49 n n C16 H20 65I sing 50 n n C17 H21 65I sing 51 n n C17 H22 65I sing 52 n n C18 H23 65I sing 53 n n C18 H24 65I sing 54 n n C19 H25 65I sing 55 n n C19 H26 65I sing 56 n n C2 H27 65I sing 57 n n C2 H28 65I sing 58 n n C20 H29 65I sing 59 n n C20 H30 65I sing 60 n n C21 H31 65I sing 61 n n C21 H32 65I sing 62 n n C21 H33 65I sing 63 n n C3 H34 65I sing 64 n n C3 H35 65I sing 65 n n C4 H36 65I sing 66 n n C4 H37 65I sing 67 n n C6 H38 65I sing 68 n n C6 H39 65I sing 69 n n C7 H40 65I sing 70 n n C8 H41 65I sing 71 n n C8 H42 65I sing 72 n n C9 H43 65I sing 73 n n C9 H44 65I sing 74 n n O3 H45 65I sing 75 n n # _atom_sites.entry_id 7TYS _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 ATP A 1 401 401 ATP ATP . H 5 K A 1 402 500 K K . I 5 K A 1 403 503 K K . J 6 POV A 1 404 505 POV POV . K 7 P5S A 1 405 508 P5S P5S . L 7 P5S A 1 406 507 P5S P5S . M 4 ATP B 1 401 401 ATP ATP . N 6 POV B 1 402 505 POV POV . O 7 P5S B 1 403 506 P5S P5S . P 4 ATP C 1 401 401 ATP ATP . Q 6 POV C 1 402 505 POV POV . R 7 P5S C 1 403 506 P5S P5S . S 4 ATP D 1 401 401 ATP ATP . T 7 P5S D 1 402 505 P5S P5S . U 6 POV D 1 403 506 POV POV . V 8 65I E 1 1601 506 65I PTY . W 9 BJX E 1 1602 2001 BJX BJX . X 4 ATP E 1 1603 2002 ATP ATP . Y 8 65I E 1 1604 2003 65I PTY . Z 8 65I E 1 1605 2004 65I PTY . AA 8 65I E 1 1606 2005 65I PTY . BA 7 P5S E 1 1607 2006 P5S P5S . CA 6 POV E 1 1608 2007 POV POV . DA 8 65I E 1 1609 2008 65I PTY . EA 8 65I E 1 1610 2009 65I PTY . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N 65I . . . Z 8 195.741 167.203 200.62 1 71.2 ? N 65I 1605 E 1 HETATM 2 C C 65I . . . Z 8 193.181 166.527 188.108 1 71.46 ? C 65I 1605 E 1 HETATM 3 O O 65I . . . Z 8 195.107 164.804 194.369 1 71.99 ? O 65I 1605 E 1 HETATM 4 C C1 65I . . . Z 8 193.928 166.963 189.362 1 73.44 ? C1 65I 1605 E 1 HETATM 5 C C10 65I . . . Z 8 197.096 167.351 201.125 1 68.76 ? C10 65I 1605 E 1 HETATM 6 C C11 65I . . . Z 8 199.055 169.346 193.643 1 73.59 ? C11 65I 1605 E 1 HETATM 7 C C12 65I . . . Z 8 198.674 170.778 193.391 1 66.4 ? C12 65I 1605 E 1 HETATM 8 C C13 65I . . . Z 8 198.748 171.167 191.925 1 65.24 ? C13 65I 1605 E 1 HETATM 9 C C14 65I . . . Z 8 197.738 170.403 191.08 1 67.09 ? C14 65I 1605 E 1 HETATM 10 C C15 65I . . . Z 8 197.781 170.796 189.609 1 67.81 ? C15 65I 1605 E 1 HETATM 11 C C16 65I . . . Z 8 196.898 169.924 188.726 1 70.41 ? C16 65I 1605 E 1 HETATM 12 C C17 65I . . . Z 8 196.76 170.45 187.302 1 70.9 ? C17 65I 1605 E 1 HETATM 13 C C18 65I . . . Z 8 195.503 169.96 186.594 1 73.81 ? C18 65I 1605 E 1 HETATM 14 C C19 65I . . . Z 8 195.489 170.275 185.103 1 73.73 ? C19 65I 1605 E 1 HETATM 15 C C2 65I . . . Z 8 194.738 165.849 190.013 1 73.22 ? C2 65I 1605 E 1 HETATM 16 C C20 65I . . . Z 8 194.093 170.389 184.505 1 67.79 ? C20 65I 1605 E 1 HETATM 17 C C21 65I . . . Z 8 193.146 169.3 184.993 1 67.74 ? C21 65I 1605 E 1 HETATM 18 C C3 65I . . . Z 8 195.041 166.14 191.478 1 70.11 ? C3 65I 1605 E 1 HETATM 19 C C4 65I . . . Z 8 195.926 165.083 192.12 1 72.32 ? C4 65I 1605 E 1 HETATM 20 C C5 65I . . . Z 8 195.981 165.163 193.622 1 71.39 ? C5 65I 1605 E 1 HETATM 21 C C6 65I . . . Z 8 197.261 167.106 194.03 1 73.68 ? C6 65I 1605 E 1 HETATM 22 C C7 65I . . . Z 8 198.343 167.509 195.006 1 73.41 ? C7 65I 1605 E 1 HETATM 23 C C8 65I . . . Z 8 197.931 167.223 196.436 1 69.29 ? C8 65I 1605 E 1 HETATM 24 C C9 65I . . . Z 8 198.118 167.08 200.044 1 73.87 ? C9 65I 1605 E 1 HETATM 25 O O1 65I . . . Z 8 197.128 165.685 194.056 1 74.79 ? O1 65I 1605 E 1 HETATM 26 O O2 65I . . . Z 8 199.085 167.101 197.233 1 74.61 ? O2 65I 1605 E 1 HETATM 27 O O3 65I . . . Z 8 200.706 168.072 198.993 1 72.01 ? O3 65I 1605 E 1 HETATM 28 O O4 65I . . . Z 8 199.386 169.642 197.419 1 73.98 ? O4 65I 1605 E 1 HETATM 29 O O5 65I . . . Z 8 198.136 168.173 199.136 1 77.69 ? O5 65I 1605 E 1 HETATM 30 O O6 65I . . . Z 8 198.576 168.91 194.808 1 74.57 ? O6 65I 1605 E 1 HETATM 31 O O7 65I . . . Z 8 199.711 168.668 192.894 1 76.05 ? O7 65I 1605 E 1 HETATM 32 P P 65I . . . Z 8 199.468 168.372 198.205 1 87.25 ? P 65I 1605 E 1 # _model_server_stats.io_time_ms 34 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 32 #