data_7TYS # _model_server_result.job_id TD3zwxaWVivVGbVpMcutyA _model_server_result.datetime_utc '2024-11-30 10:01:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7tys # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"S","auth_seq_id":401}' # _entry.id 7TYS # _exptl.entry_id 7TYS _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7TYS _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7TYS _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 M N N ? 4 P N N ? 4 S N N ? 4 X N N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 3 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n F NAG 1 F 1 NAG E 2010 NAG 3 n F NAG 2 F 2 NAG E 2011 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 110 A CYS 110 1_555 A SG CYS 142 A CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 B SG CYS 110 B CYS 110 1_555 B SG CYS 142 B CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf3 C SG CYS 110 C CYS 110 1_555 C SG CYS 142 C CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf4 D SG CYS 110 D CYS 110 1_555 D SG CYS 142 D CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf5 E SG CYS 6 E CYS 6 1_555 E SG CYS 26 E CYS 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? covale ? covale1 E ND2 ASN 10 E ASN 10 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale2 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? metalc ? metalc1 A O THR 130 A THR 130 1_555 I K K . A K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.693 ? metalc ? metalc2 A O ILE 131 A ILE 131 1_555 I K K . A K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.196 ? metalc ? metalc3 A O PHE 133 A PHE 133 1_555 H K K . A K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.843 ? metalc ? metalc4 H K K . A K 402 1_555 B O PHE 133 B PHE 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.672 ? metalc ? metalc5 H K K . A K 402 1_555 C O PHE 133 C PHE 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.638 ? metalc ? metalc6 H K K . A K 402 1_555 D O PHE 133 D PHE 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.703 ? metalc ? metalc7 I K K . A K 403 1_555 B O THR 130 B THR 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.567 ? metalc ? metalc8 I K K . A K 403 1_555 B O ILE 131 B ILE 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.076 ? metalc ? metalc9 I K K . A K 403 1_555 C O THR 130 C THR 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.607 ? metalc ? metalc10 I K K . A K 403 1_555 C O ILE 131 C ILE 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.946 ? metalc ? metalc11 I K K . A K 403 1_555 D O THR 130 D THR 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.59 ? metalc ? metalc12 I K K . A K 403 1_555 D O ILE 131 D ILE 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.175 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 145 n n PG O2G ATP sing 146 n n PG O3G ATP sing 147 n n PG O3B ATP sing 148 n n O2G HOG2 ATP sing 149 n n O3G HOG3 ATP sing 150 n n PB O1B ATP doub 151 n n PB O2B ATP sing 152 n n PB O3B ATP sing 153 n n PB O3A ATP sing 154 n n O2B HOB2 ATP sing 155 n n PA O1A ATP doub 156 n n PA O2A ATP sing 157 n n PA O3A ATP sing 158 n n PA O5' ATP sing 159 n n O2A HOA2 ATP sing 160 n n O5' C5' ATP sing 161 n n C5' C4' ATP sing 162 n n C5' "H5'1" ATP sing 163 n n C5' "H5'2" ATP sing 164 n n C4' O4' ATP sing 165 n n C4' C3' ATP sing 166 n n C4' H4' ATP sing 167 n n O4' C1' ATP sing 168 n n C3' O3' ATP sing 169 n n C3' C2' ATP sing 170 n n C3' H3' ATP sing 171 n n O3' HO3' ATP sing 172 n n C2' O2' ATP sing 173 n n C2' C1' ATP sing 174 n n C2' H2' ATP sing 175 n n O2' HO2' ATP sing 176 n n C1' N9 ATP sing 177 n n C1' H1' ATP sing 178 n n N9 C8 ATP sing 179 n y N9 C4 ATP sing 180 n y C8 N7 ATP doub 181 n y C8 H8 ATP sing 182 n n N7 C5 ATP sing 183 n y C5 C6 ATP sing 184 n y C5 C4 ATP doub 185 n y C6 N6 ATP sing 186 n n C6 N1 ATP doub 187 n y N6 HN61 ATP sing 188 n n N6 HN62 ATP sing 189 n n N1 C2 ATP sing 190 n y C2 N3 ATP doub 191 n y C2 H2 ATP sing 192 n n N3 C4 ATP sing 193 n y # _atom_sites.entry_id 7TYS _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 ATP A 1 401 401 ATP ATP . H 5 K A 1 402 500 K K . I 5 K A 1 403 503 K K . J 6 POV A 1 404 505 POV POV . K 7 P5S A 1 405 508 P5S P5S . L 7 P5S A 1 406 507 P5S P5S . M 4 ATP B 1 401 401 ATP ATP . N 6 POV B 1 402 505 POV POV . O 7 P5S B 1 403 506 P5S P5S . P 4 ATP C 1 401 401 ATP ATP . Q 6 POV C 1 402 505 POV POV . R 7 P5S C 1 403 506 P5S P5S . S 4 ATP D 1 401 401 ATP ATP . T 7 P5S D 1 402 505 P5S P5S . U 6 POV D 1 403 506 POV POV . V 8 65I E 1 1601 506 65I PTY . W 9 BJX E 1 1602 2001 BJX BJX . X 4 ATP E 1 1603 2002 ATP ATP . Y 8 65I E 1 1604 2003 65I PTY . Z 8 65I E 1 1605 2004 65I PTY . AA 8 65I E 1 1606 2005 65I PTY . BA 7 P5S E 1 1607 2006 P5S P5S . CA 6 POV E 1 1608 2007 POV POV . DA 8 65I E 1 1609 2008 65I PTY . EA 8 65I E 1 1610 2009 65I PTY . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . S 4 131.82 130.402 140.78 1 75.93 ? PG ATP 401 D 1 HETATM 2 O O1G ATP . . . S 4 131.29 130.435 139.386 1 55.25 ? O1G ATP 401 D 1 HETATM 3 O O2G ATP . . . S 4 132.349 129.027 141.203 1 60.41 ? O2G ATP 401 D 1 HETATM 4 O O3G ATP . . . S 4 130.821 130.901 141.828 1 59.29 ? O3G ATP 401 D 1 HETATM 5 P PB ATP . . . S 4 133.612 132.531 141.872 1 53.21 ? PB ATP 401 D 1 HETATM 6 O O1B ATP . . . S 4 132.521 133.232 142.569 1 51.22 ? O1B ATP 401 D 1 HETATM 7 O O2B ATP . . . S 4 134.689 131.925 142.769 1 40.24 ? O2B ATP 401 D 1 HETATM 8 O O3B ATP . . . S 4 133.076 131.379 140.926 1 59.36 ? O3B ATP 401 D 1 HETATM 9 P PA ATP . . . S 4 134.034 134.857 140.105 1 52.69 ? PA ATP 401 D 1 HETATM 10 O O1A ATP . . . S 4 134.361 134.805 138.667 1 46.95 ? O1A ATP 401 D 1 HETATM 11 O O2A ATP . . . S 4 132.591 135.223 140.434 1 45.9 ? O2A ATP 401 D 1 HETATM 12 O O3A ATP . . . S 4 134.343 133.482 140.828 1 55.45 ? O3A ATP 401 D 1 HETATM 13 O O5' ATP . . . S 4 134.998 135.851 140.861 1 52.86 ? O5' ATP 401 D 1 HETATM 14 C C5' ATP . . . S 4 136.407 135.568 140.992 1 49.43 ? C5' ATP 401 D 1 HETATM 15 C C4' ATP . . . S 4 136.991 136.477 142.041 1 43.83 ? C4' ATP 401 D 1 HETATM 16 O O4' ATP . . . S 4 136.069 137.556 142.308 1 41.61 ? O4' ATP 401 D 1 HETATM 17 C C3' ATP . . . S 4 137.276 135.819 143.389 1 42.66 ? C3' ATP 401 D 1 HETATM 18 O O3' ATP . . . S 4 138.449 136.366 143.979 1 52.62 ? O3' ATP 401 D 1 HETATM 19 C C2' ATP . . . S 4 136.028 136.165 144.202 1 45.47 ? C2' ATP 401 D 1 HETATM 20 O O2' ATP . . . S 4 136.317 136.214 145.593 1 56.69 ? O2' ATP 401 D 1 HETATM 21 C C1' ATP . . . S 4 135.716 137.563 143.676 1 42.99 ? C1' ATP 401 D 1 HETATM 22 N N9 ATP . . . S 4 134.316 137.948 143.776 1 45.43 ? N9 ATP 401 D 1 HETATM 23 C C8 ATP . . . S 4 133.277 137.475 143.02 1 54.69 ? C8 ATP 401 D 1 HETATM 24 N N7 ATP . . . S 4 132.115 138.003 143.317 1 54.52 ? N7 ATP 401 D 1 HETATM 25 C C5 ATP . . . S 4 132.411 138.893 144.336 1 43.94 ? C5 ATP 401 D 1 HETATM 26 C C6 ATP . . . S 4 131.613 139.772 145.09 1 48.4 ? C6 ATP 401 D 1 HETATM 27 N N6 ATP . . . S 4 130.293 139.904 144.926 1 52.19 ? N6 ATP 401 D 1 HETATM 28 N N1 ATP . . . S 4 132.222 140.521 146.033 1 53.09 ? N1 ATP 401 D 1 HETATM 29 C C2 ATP . . . S 4 133.539 140.392 146.203 1 55.66 ? C2 ATP 401 D 1 HETATM 30 N N3 ATP . . . S 4 134.394 139.6 145.553 1 49.85 ? N3 ATP 401 D 1 HETATM 31 C C4 ATP . . . S 4 133.765 138.872 144.627 1 41.7 ? C4 ATP 401 D 1 # _model_server_stats.io_time_ms 40 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 37 _model_server_stats.query_time_ms 439 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #