data_7TYS # _model_server_result.job_id D2FU6c5QiPLCFMSB3wR4QQ _model_server_result.datetime_utc '2024-10-25 20:32:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7tys # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Q","auth_seq_id":402}' # _entry.id 7TYS # _exptl.entry_id 7TYS _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 760.076 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7TYS _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7TYS _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 J N N ? 6 N N N ? 6 Q N N ? 6 U N N ? 6 CA N N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 3 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n F NAG 1 F 1 NAG E 2010 NAG 3 n F NAG 2 F 2 NAG E 2011 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 110 A CYS 110 1_555 A SG CYS 142 A CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 B SG CYS 110 B CYS 110 1_555 B SG CYS 142 B CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf3 C SG CYS 110 C CYS 110 1_555 C SG CYS 142 C CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf4 D SG CYS 110 D CYS 110 1_555 D SG CYS 142 D CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf5 E SG CYS 6 E CYS 6 1_555 E SG CYS 26 E CYS 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? covale ? covale1 E ND2 ASN 10 E ASN 10 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale2 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? metalc ? metalc1 A O THR 130 A THR 130 1_555 I K K . A K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.693 ? metalc ? metalc2 A O ILE 131 A ILE 131 1_555 I K K . A K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.196 ? metalc ? metalc3 A O PHE 133 A PHE 133 1_555 H K K . A K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.843 ? metalc ? metalc4 H K K . A K 402 1_555 B O PHE 133 B PHE 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.672 ? metalc ? metalc5 H K K . A K 402 1_555 C O PHE 133 C PHE 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.638 ? metalc ? metalc6 H K K . A K 402 1_555 D O PHE 133 D PHE 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.703 ? metalc ? metalc7 I K K . A K 403 1_555 B O THR 130 B THR 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.567 ? metalc ? metalc8 I K K . A K 403 1_555 B O ILE 131 B ILE 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.076 ? metalc ? metalc9 I K K . A K 403 1_555 C O THR 130 C THR 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.607 ? metalc ? metalc10 I K K . A K 403 1_555 C O ILE 131 C ILE 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.946 ? metalc ? metalc11 I K K . A K 403 1_555 D O THR 130 D THR 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.59 ? metalc ? metalc12 I K K . A K 403 1_555 D O ILE 131 D ILE 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.175 ? # _chem_comp.formula 'C42 H82 N O8 P' _chem_comp.formula_weight 760.076 _chem_comp.id POV _chem_comp.mon_nstd_flag . _chem_comp.name '(2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms POPC # _atom_sites.entry_id 7TYS _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 ATP A 1 401 401 ATP ATP . H 5 K A 1 402 500 K K . I 5 K A 1 403 503 K K . J 6 POV A 1 404 505 POV POV . K 7 P5S A 1 405 508 P5S P5S . L 7 P5S A 1 406 507 P5S P5S . M 4 ATP B 1 401 401 ATP ATP . N 6 POV B 1 402 505 POV POV . O 7 P5S B 1 403 506 P5S P5S . P 4 ATP C 1 401 401 ATP ATP . Q 6 POV C 1 402 505 POV POV . R 7 P5S C 1 403 506 P5S P5S . S 4 ATP D 1 401 401 ATP ATP . T 7 P5S D 1 402 505 P5S P5S . U 6 POV D 1 403 506 POV POV . V 8 65I E 1 1601 506 65I PTY . W 9 BJX E 1 1602 2001 BJX BJX . X 4 ATP E 1 1603 2002 ATP ATP . Y 8 65I E 1 1604 2003 65I PTY . Z 8 65I E 1 1605 2004 65I PTY . AA 8 65I E 1 1606 2005 65I PTY . BA 7 P5S E 1 1607 2006 P5S P5S . CA 6 POV E 1 1608 2007 POV POV . DA 8 65I E 1 1609 2008 65I PTY . EA 8 65I E 1 1610 2009 65I PTY . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N POV . . . Q 6 133.276 148.327 201.373 1 57.46 ? N POV 402 C 1 HETATM 2 P P POV . . . Q 6 132.272 147.561 196.544 1 59.07 ? P POV 402 C 1 HETATM 3 C C1 POV . . . Q 6 131.221 149.802 195.634 1 55.72 ? C1 POV 402 C 1 HETATM 4 C C2 POV . . . Q 6 130.661 149.88 194.209 1 57.1 ? C2 POV 402 C 1 HETATM 5 C C3 POV . . . Q 6 131.013 148.664 193.387 1 52.85 ? C3 POV 402 C 1 HETATM 6 C C210 POV . . . Q 6 132.932 158.698 186.017 1 52.36 ? C210 POV 402 C 1 HETATM 7 C C11 POV . . . Q 6 133.168 147.345 198.982 1 56.79 ? C11 POV 402 C 1 HETATM 8 O O11 POV . . . Q 6 132.315 148.914 195.649 1 50.4 ? O11 POV 402 C 1 HETATM 9 C C12 POV . . . Q 6 132.51 147.562 200.325 1 57.72 ? C12 POV 402 C 1 HETATM 10 O O12 POV . . . Q 6 132.707 148.23 197.991 1 58.66 ? O12 POV 402 C 1 HETATM 11 C C13 POV . . . Q 6 134.578 147.674 201.683 1 52.56 ? C13 POV 402 C 1 HETATM 12 O O13 POV . . . Q 6 130.839 147.144 196.635 1 61.76 ? O13 POV 402 C 1 HETATM 13 C C14 POV . . . Q 6 133.521 149.689 200.824 1 53.36 ? C14 POV 402 C 1 HETATM 14 O O14 POV . . . Q 6 133.329 146.596 196.125 1 57.46 ? O14 POV 402 C 1 HETATM 15 C C15 POV . . . Q 6 132.49 148.482 202.628 1 60.06 ? C15 POV 402 C 1 HETATM 16 C C21 POV . . . Q 6 130.697 152.234 193.773 1 66.15 ? C21 POV 402 C 1 HETATM 17 O O21 POV . . . Q 6 131.159 151.015 193.499 1 67.06 ? O21 POV 402 C 1 HETATM 18 C C22 POV . . . Q 6 131.439 153.284 192.988 1 57.44 ? C22 POV 402 C 1 HETATM 19 O O22 POV . . . Q 6 129.799 152.448 194.549 1 62.57 ? O22 POV 402 C 1 HETATM 20 C C23 POV . . . Q 6 131.559 152.981 191.503 1 58.01 ? C23 POV 402 C 1 HETATM 21 C C24 POV . . . Q 6 131.906 154.219 190.686 1 59.11 ? C24 POV 402 C 1 HETATM 22 C C25 POV . . . Q 6 133.379 154.602 190.75 1 59.26 ? C25 POV 402 C 1 HETATM 23 C C26 POV . . . Q 6 133.92 155.124 189.425 1 53.75 ? C26 POV 402 C 1 HETATM 24 C C27 POV . . . Q 6 133.185 156.355 188.909 1 58.46 ? C27 POV 402 C 1 HETATM 25 C C28 POV . . . Q 6 133.531 156.687 187.456 1 58.49 ? C28 POV 402 C 1 HETATM 26 C C29 POV . . . Q 6 132.624 157.727 186.875 1 56.37 ? C29 POV 402 C 1 HETATM 27 C C31 POV . . . Q 6 130.629 147.746 191.269 1 62 ? C31 POV 402 C 1 HETATM 28 O O31 POV . . . Q 6 130.469 148.783 192.08 1 52.78 ? O31 POV 402 C 1 HETATM 29 C C32 POV . . . Q 6 130.135 148.044 189.884 1 63.12 ? C32 POV 402 C 1 HETATM 30 O O32 POV . . . Q 6 131.117 146.701 191.621 1 61.31 ? O32 POV 402 C 1 HETATM 31 C C33 POV . . . Q 6 129.835 146.8 189.067 1 60.82 ? C33 POV 402 C 1 HETATM 32 C C34 POV . . . Q 6 129.633 147.129 187.595 1 56.52 ? C34 POV 402 C 1 HETATM 33 C C35 POV . . . Q 6 130.904 147.076 186.76 1 59.23 ? C35 POV 402 C 1 HETATM 34 C C36 POV . . . Q 6 130.627 147.369 185.291 1 60.8 ? C36 POV 402 C 1 HETATM 35 C C37 POV . . . Q 6 131.868 147.367 184.409 1 60.01 ? C37 POV 402 C 1 HETATM 36 C C38 POV . . . Q 6 131.538 147.655 182.949 1 59.18 ? C38 POV 402 C 1 # _model_server_stats.io_time_ms 31 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 62 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 36 #