data_7TYT # _model_server_result.job_id -l1Jew4Vagnv1RJryaVb8Q _model_server_result.datetime_utc '2024-11-23 13:55:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7tyt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"R","auth_seq_id":1602}' # _entry.id 7TYT # _exptl.entry_id 7TYT _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 452.586 _entity.id 9 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description Repaglinide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7TYT _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7TYT _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 9 _struct_asym.id R _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 3 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n F NAG 1 F 1 NAG E 2010 NAG 3 n F NAG 2 F 2 NAG E 2011 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 110 A CYS 110 1_555 A SG CYS 142 A CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 B SG CYS 110 B CYS 110 1_555 B SG CYS 142 B CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 C SG CYS 110 C CYS 110 1_555 C SG CYS 142 C CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf4 D SG CYS 110 D CYS 110 1_555 D SG CYS 142 D CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf5 E SG CYS 6 E CYS 6 1_555 E SG CYS 26 E CYS 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? covale ? covale1 E ND2 ASN 10 E ASN 10 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale2 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? metalc ? metalc1 A O THR 130 A THR 130 1_555 H K K . A K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.584 ? metalc ? metalc2 A OG1 THR 130 A THR 130 1_555 H K K . A K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.257 ? metalc ? metalc3 H K K . A K 402 1_555 B O THR 130 B THR 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.616 ? metalc ? metalc4 H K K . A K 402 1_555 B OG1 THR 130 B THR 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.489 ? metalc ? metalc5 H K K . A K 402 1_555 C O THR 130 C THR 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.586 ? metalc ? metalc6 H K K . A K 402 1_555 C OG1 THR 130 C THR 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.395 ? metalc ? metalc7 H K K . A K 402 1_555 D O THR 130 D THR 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.619 ? # _chem_comp.formula 'C27 H36 N2 O4' _chem_comp.formula_weight 452.586 _chem_comp.id BJX _chem_comp.mon_nstd_flag . _chem_comp.name Repaglinide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '2-ethoxy-4-[2-({(1S)-3-methyl-1-[2-(piperidin-1-yl)phenyl]butyl}amino)-2-oxoethyl]benzoic acid' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C13 C9 BJX sing 119 n n C12 C9 BJX sing 120 n n C9 C8 BJX sing 121 n n C8 C5 BJX sing 122 n n C11 C15 BJX doub 123 n y C11 C7 BJX sing 124 n y C5 C7 BJX sing 125 n n C5 N1 BJX sing 126 n n O C16 BJX doub 127 n n C15 C14 BJX sing 128 n y C7 C6 BJX doub 129 n y C26 C25 BJX sing 130 n n C25 O1 BJX sing 131 n n C16 N1 BJX sing 132 n n C16 C17 BJX sing 133 n n C N BJX sing 134 n n C C2 BJX sing 135 n n C14 C10 BJX doub 136 n y C6 C10 BJX sing 137 n y C6 N BJX sing 138 n n N C1 BJX sing 139 n n C2 C4 BJX sing 140 n n O1 C21 BJX sing 141 n n C19 C21 BJX doub 142 n y C19 C18 BJX sing 143 n y C17 C18 BJX sing 144 n n C21 C23 BJX sing 145 n y C18 C20 BJX doub 146 n y C4 C3 BJX sing 147 n n C1 C3 BJX sing 148 n n O2 C24 BJX doub 149 n n C20 C22 BJX sing 150 n y C23 C24 BJX sing 151 n n C23 C22 BJX doub 152 n y C24 O3 BJX sing 153 n n C9 H1 BJX sing 154 n n C10 H2 BJX sing 155 n n C11 H3 BJX sing 156 n n C12 H4 BJX sing 157 n n C12 H5 BJX sing 158 n n C12 H6 BJX sing 159 n n C13 H7 BJX sing 160 n n C13 H8 BJX sing 161 n n C13 H9 BJX sing 162 n n C14 H10 BJX sing 163 n n C15 H11 BJX sing 164 n n C17 H12 BJX sing 165 n n C17 H13 BJX sing 166 n n C19 H14 BJX sing 167 n n C20 H15 BJX sing 168 n n C8 H16 BJX sing 169 n n C8 H17 BJX sing 170 n n C5 H18 BJX sing 171 n n C4 H19 BJX sing 172 n n C4 H20 BJX sing 173 n n C3 H21 BJX sing 174 n n C3 H22 BJX sing 175 n n C2 H23 BJX sing 176 n n C2 H24 BJX sing 177 n n C1 H25 BJX sing 178 n n C1 H26 BJX sing 179 n n C H27 BJX sing 180 n n C H28 BJX sing 181 n n C22 H29 BJX sing 182 n n C25 H30 BJX sing 183 n n C25 H31 BJX sing 184 n n C26 H32 BJX sing 185 n n C26 H33 BJX sing 186 n n C26 H34 BJX sing 187 n n N1 H35 BJX sing 188 n n O3 H36 BJX sing 189 n n # _atom_sites.entry_id 7TYT _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 ATP A 1 401 401 ATP ATP . H 5 K A 1 402 504 K K . I 6 POV A 1 403 505 POV POV . J 4 ATP B 1 401 401 ATP ATP . K 6 POV B 1 402 505 POV POV . L 7 P5S B 1 403 506 P5S P5S . M 4 ATP B 1 404 401 ATP ATP . N 6 POV C 1 401 505 POV POV . O 4 ATP D 1 401 401 ATP ATP . P 6 POV D 1 402 505 POV POV . Q 8 PTY E 1 1601 506 PTY PTY . R 9 BJX E 1 1602 2001 BJX BJX . S 4 ATP E 1 1603 2002 ATP ATP . T 8 PTY E 1 1604 2003 PTY PTY . U 8 PTY E 1 1605 2004 PTY PTY . V 8 PTY E 1 1606 2005 PTY PTY . W 7 P5S E 1 1607 2006 P5S P5S . X 6 POV E 1 1608 2007 POV POV . Y 8 PTY E 1 1609 2008 PTY PTY . Z 8 PTY E 1 1610 2009 PTY PTY . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C9 BJX . . . R 9 224.49 178.255 159.982 1 25.29 ? C9 BJX 1602 E 1 HETATM 2 C C10 BJX . . . R 9 222.27 173.512 161.392 1 25.29 ? C10 BJX 1602 E 1 HETATM 3 C C11 BJX . . . R 9 222.585 174.422 158.785 1 25.29 ? C11 BJX 1602 E 1 HETATM 4 C C12 BJX . . . R 9 225.066 179.307 160.937 1 25.29 ? C12 BJX 1602 E 1 HETATM 5 C C13 BJX . . . R 9 225.415 177.022 159.909 1 25.29 ? C13 BJX 1602 E 1 HETATM 6 C C14 BJX . . . R 9 222.497 172.588 160.351 1 25.29 ? C14 BJX 1602 E 1 HETATM 7 C C15 BJX . . . R 9 222.654 173.044 159.041 1 25.29 ? C15 BJX 1602 E 1 HETATM 8 C C16 BJX . . . R 9 219.92 178.214 159.585 1 25.29 ? C16 BJX 1602 E 1 HETATM 9 C C17 BJX . . . R 9 218.455 178.213 159.121 1 25.29 ? C17 BJX 1602 E 1 HETATM 10 C C18 BJX . . . R 9 218.031 176.785 158.693 1 25.29 ? C18 BJX 1602 E 1 HETATM 11 C C19 BJX . . . R 9 218.057 176.336 157.346 1 25.29 ? C19 BJX 1602 E 1 HETATM 12 C C20 BJX . . . R 9 217.695 175.842 159.679 1 25.29 ? C20 BJX 1602 E 1 HETATM 13 C C8 BJX . . . R 9 223.044 177.876 160.373 1 25.29 ? C8 BJX 1602 E 1 HETATM 14 C C7 BJX . . . R 9 222.38 175.378 159.801 1 25.29 ? C7 BJX 1602 E 1 HETATM 15 C C6 BJX . . . R 9 222.187 174.906 161.161 1 25.29 ? C6 BJX 1602 E 1 HETATM 16 C C5 BJX . . . R 9 222.303 176.891 159.352 1 25.29 ? C5 BJX 1602 E 1 HETATM 17 C C4 BJX . . . R 9 220.731 177.027 164.848 1 25.29 ? C4 BJX 1602 E 1 HETATM 18 C C3 BJX . . . R 9 220.547 177.612 163.448 1 25.29 ? C3 BJX 1602 E 1 HETATM 19 C C2 BJX . . . R 9 221.918 176.063 164.925 1 25.29 ? C2 BJX 1602 E 1 HETATM 20 C C1 BJX . . . R 9 220.619 176.523 162.355 1 25.29 ? C1 BJX 1602 E 1 HETATM 21 O O1 BJX . . . R 9 217.688 174.619 155.632 1 25.29 ? O1 BJX 1602 E 1 HETATM 22 O O2 BJX . . . R 9 217.8 171.683 157.765 1 25.29 ? O2 BJX 1602 E 1 HETATM 23 N N BJX . . . R 9 221.946 175.829 162.36 1 25.29 ? N BJX 1602 E 1 HETATM 24 C C BJX . . . R 9 222.065 175.117 163.687 1 25.29 ? C BJX 1602 E 1 HETATM 25 O O BJX . . . R 9 220.294 179.04 160.424 1 25.29 ? O BJX 1602 E 1 HETATM 26 C C21 BJX . . . R 9 217.69 175.006 157 1 25.29 ? C21 BJX 1602 E 1 HETATM 27 C C22 BJX . . . R 9 217.338 174.517 159.329 1 25.29 ? C22 BJX 1602 E 1 HETATM 28 C C23 BJX . . . R 9 217.328 174.085 157.997 1 25.29 ? C23 BJX 1602 E 1 HETATM 29 C C24 BJX . . . R 9 216.931 172.624 157.657 1 25.29 ? C24 BJX 1602 E 1 HETATM 30 C C25 BJX . . . R 9 218.827 173.91 155.127 1 25.29 ? C25 BJX 1602 E 1 HETATM 31 C C26 BJX . . . R 9 218.414 172.946 153.967 1 25.29 ? C26 BJX 1602 E 1 HETATM 32 N N1 BJX . . . R 9 220.844 177.208 159.087 1 25.29 ? N1 BJX 1602 E 1 HETATM 33 O O3 BJX . . . R 9 215.733 172.35 157.261 1 25.29 ? O3 BJX 1602 E 1 # _model_server_stats.io_time_ms 30 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 37 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 33 #