data_7TYT
#
_model_server_result.job_id            v2yyT0kNn6MAgiU654hAtQ 
_model_server_result.datetime_utc      '2024-11-23 13:53:34' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7tyt 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"X","auth_seq_id":1608}' 
#
_entry.id    7TYT 
#
_exptl.entry_id    7TYT 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              760.076 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate' 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7TYT 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7TYT 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 I N N 
? 6 K N N 
? 6 N N N 
? 6 P N N 
? 6 X N N 
#
_pdbx_entity_branch.entity_id    3 
_pdbx_entity_branch.type         oligosaccharide 
#
_pdbx_entity_branch_link.link_id                     1 
_pdbx_entity_branch_link.details                     ? 
_pdbx_entity_branch_link.entity_id                   3 
_pdbx_entity_branch_link.entity_branch_list_num_1    2 
_pdbx_entity_branch_link.entity_branch_list_num_2    1 
_pdbx_entity_branch_link.comp_id_1                   NAG 
_pdbx_entity_branch_link.comp_id_2                   NAG 
_pdbx_entity_branch_link.atom_id_1                   C1 
_pdbx_entity_branch_link.leaving_atom_id_1           O1 
_pdbx_entity_branch_link.atom_stereo_config_1        . 
_pdbx_entity_branch_link.atom_id_2                   O4 
_pdbx_entity_branch_link.leaving_atom_id_2           HO4 
_pdbx_entity_branch_link.atom_stereo_config_2        . 
_pdbx_entity_branch_link.value_order                 sing 
#
loop_
_pdbx_branch_scheme.entity_id
_pdbx_branch_scheme.hetero
_pdbx_branch_scheme.asym_id
_pdbx_branch_scheme.mon_id
_pdbx_branch_scheme.num
_pdbx_branch_scheme.pdb_asym_id
_pdbx_branch_scheme.pdb_seq_num
_pdbx_branch_scheme.pdb_mon_id
_pdbx_branch_scheme.auth_asym_id
_pdbx_branch_scheme.auth_seq_num
_pdbx_branch_scheme.auth_mon_id
3 n F NAG 1 F 1 NAG E 2010 NAG 
3 n F NAG 2 F 2 NAG E 2011 NAG 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 110 A CYS 110 1_555 A SG CYS 142 A CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf2 B SG CYS 110 B CYS 110 1_555 B SG CYS 142 B CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf3 C SG CYS 110 C CYS 110 1_555 C SG CYS 142 C CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf4 D SG CYS 110 D CYS 110 1_555 D SG CYS 142 D CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf5 E SG CYS 6 E CYS 6 1_555 E SG CYS 26 E CYS 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
covale ? covale1 E ND2 ASN 10 E ASN 10 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? 
covale ? covale2 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? 
metalc ? metalc1 A O THR 130 A THR 130 1_555 H K K . A K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.584 ? 
metalc ? metalc2 A OG1 THR 130 A THR 130 1_555 H K K . A K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.257 ? 
metalc ? metalc3 H K K . A K 402 1_555 B O THR 130 B THR 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.616 ? 
metalc ? metalc4 H K K . A K 402 1_555 B OG1 THR 130 B THR 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.489 ? 
metalc ? metalc5 H K K . A K 402 1_555 C O THR 130 C THR 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.586 ? 
metalc ? metalc6 H K K . A K 402 1_555 C OG1 THR 130 C THR 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.395 ? 
metalc ? metalc7 H K K . A K 402 1_555 D O THR 130 D THR 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.619 ? 
#
_chem_comp.formula           'C42 H82 N O8 P' 
_chem_comp.formula_weight    760.076 
_chem_comp.id                POV 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     POPC 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N C12 POV sing 543 n n 
N C13 POV sing 544 n n 
N C14 POV sing 545 n n 
N C15 POV sing 546 n n 
P O11 POV sing 547 n n 
P O12 POV sing 548 n n 
P O13 POV sing 549 n n 
P O14 POV doub 550 n n 
C1 C2 POV sing 551 n n 
C1 O11 POV sing 552 n n 
C1 H1 POV sing 553 n n 
C1 H1A POV sing 554 n n 
C2 C3 POV sing 555 n n 
C2 O21 POV sing 556 n n 
C2 H2 POV sing 557 n n 
C3 O31 POV sing 558 n n 
C3 H3 POV sing 559 n n 
C3 H3A POV sing 560 n n 
C210 C211 POV sing 561 n n 
C210 C29 POV doub 562 z n 
C210 H210 POV sing 563 n n 
C310 C311 POV sing 564 n n 
C310 C39 POV sing 565 n n 
C310 H310 POV sing 566 n n 
C310 H31A POV sing 567 n n 
C11 C12 POV sing 568 n n 
C11 O12 POV sing 569 n n 
C11 H11 POV sing 570 n n 
C11 H11A POV sing 571 n n 
C211 C212 POV sing 572 n n 
C211 H211 POV sing 573 n n 
C211 H21A POV sing 574 n n 
C311 C312 POV sing 575 n n 
C311 H311 POV sing 576 n n 
C311 H31B POV sing 577 n n 
C12 H12 POV sing 578 n n 
C12 H12A POV sing 579 n n 
C212 C213 POV sing 580 n n 
C212 H212 POV sing 581 n n 
C212 H21B POV sing 582 n n 
C312 C313 POV sing 583 n n 
C312 H312 POV sing 584 n n 
C312 H31C POV sing 585 n n 
C13 H13 POV sing 586 n n 
C13 H13A POV sing 587 n n 
C13 H13B POV sing 588 n n 
C213 C214 POV sing 589 n n 
C213 H213 POV sing 590 n n 
C213 H21C POV sing 591 n n 
C313 C314 POV sing 592 n n 
C313 H313 POV sing 593 n n 
C313 H31D POV sing 594 n n 
C14 H14 POV sing 595 n n 
C14 H14A POV sing 596 n n 
C14 H14B POV sing 597 n n 
C214 C215 POV sing 598 n n 
C214 H214 POV sing 599 n n 
C214 H21D POV sing 600 n n 
C314 C315 POV sing 601 n n 
C314 H314 POV sing 602 n n 
C314 H31E POV sing 603 n n 
C15 H15 POV sing 604 n n 
C15 H15A POV sing 605 n n 
C15 H15B POV sing 606 n n 
C215 C216 POV sing 607 n n 
C215 H215 POV sing 608 n n 
C215 H21E POV sing 609 n n 
C315 C316 POV sing 610 n n 
C315 H315 POV sing 611 n n 
C315 H31F POV sing 612 n n 
C216 C217 POV sing 613 n n 
C216 H216 POV sing 614 n n 
C216 H21F POV sing 615 n n 
C316 H316 POV sing 616 n n 
C316 H31G POV sing 617 n n 
C316 H31H POV sing 618 n n 
C217 C218 POV sing 619 n n 
C217 H217 POV sing 620 n n 
C217 H21G POV sing 621 n n 
C218 H218 POV sing 622 n n 
C218 H21H POV sing 623 n n 
C218 H21J POV sing 624 n n 
C21 O21 POV sing 625 n n 
C21 C22 POV sing 626 n n 
C21 O22 POV doub 627 n n 
C22 C23 POV sing 628 n n 
C22 H22 POV sing 629 n n 
C22 H22A POV sing 630 n n 
C23 C24 POV sing 631 n n 
C23 H23 POV sing 632 n n 
C23 H23A POV sing 633 n n 
C24 C25 POV sing 634 n n 
C24 H24 POV sing 635 n n 
C24 H24A POV sing 636 n n 
C25 C26 POV sing 637 n n 
C25 H25 POV sing 638 n n 
C25 H25A POV sing 639 n n 
C26 C27 POV sing 640 n n 
C26 H26 POV sing 641 n n 
C26 H26A POV sing 642 n n 
C27 C28 POV sing 643 n n 
C27 H27 POV sing 644 n n 
C27 H27A POV sing 645 n n 
C28 C29 POV sing 646 n n 
C28 H28 POV sing 647 n n 
C28 H28A POV sing 648 n n 
C29 H29 POV sing 649 n n 
C31 O31 POV sing 650 n n 
C31 C32 POV sing 651 n n 
C31 O32 POV doub 652 n n 
C32 C33 POV sing 653 n n 
C32 H32 POV sing 654 n n 
C32 H32A POV sing 655 n n 
C33 C34 POV sing 656 n n 
C33 H33 POV sing 657 n n 
C33 H33A POV sing 658 n n 
C34 C35 POV sing 659 n n 
C34 H34 POV sing 660 n n 
C34 H34A POV sing 661 n n 
C35 C36 POV sing 662 n n 
C35 H35 POV sing 663 n n 
C35 H35A POV sing 664 n n 
C36 C37 POV sing 665 n n 
C36 H36 POV sing 666 n n 
C36 H36A POV sing 667 n n 
C37 C38 POV sing 668 n n 
C37 H37 POV sing 669 n n 
C37 H37A POV sing 670 n n 
C38 C39 POV sing 671 n n 
C38 H38 POV sing 672 n n 
C38 H38A POV sing 673 n n 
C39 H39 POV sing 674 n n 
C39 H39A POV sing 675 n n 
#
_atom_sites.entry_id                     7TYT 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 4 ATP A 1 401 401 ATP ATP . 
H 5 K A 1 402 504 K K . 
I 6 POV A 1 403 505 POV POV . 
J 4 ATP B 1 401 401 ATP ATP . 
K 6 POV B 1 402 505 POV POV . 
L 7 P5S B 1 403 506 P5S P5S . 
M 4 ATP B 1 404 401 ATP ATP . 
N 6 POV C 1 401 505 POV POV . 
O 4 ATP D 1 401 401 ATP ATP . 
P 6 POV D 1 402 505 POV POV . 
Q 8 PTY E 1 1601 506 PTY PTY . 
R 9 BJX E 1 1602 2001 BJX BJX . 
S 4 ATP E 1 1603 2002 ATP ATP . 
T 8 PTY E 1 1604 2003 PTY PTY . 
U 8 PTY E 1 1605 2004 PTY PTY . 
V 8 PTY E 1 1606 2005 PTY PTY . 
W 7 P5S E 1 1607 2006 P5S P5S . 
X 6 POV E 1 1608 2007 POV POV . 
Y 8 PTY E 1 1609 2008 PTY PTY . 
Z 8 PTY E 1 1610 2009 PTY PTY . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N POV . . . X 6 195.827 184.76 156.699 1 52.23 ? N POV 1608 E 1 
HETATM 2 P P POV . . . X 6 192.863 188.129 158.856 1 52.23 ? P POV 1608 E 1 
HETATM 3 C C1 POV . . . X 6 193.284 190.226 160.418 1 52.23 ? C1 POV 1608 E 1 
HETATM 4 C C2 POV . . . X 6 193.299 190.593 161.907 1 52.23 ? C2 POV 1608 E 1 
HETATM 5 C C3 POV . . . X 6 192.288 191.652 162.281 1 52.23 ? C3 POV 1608 E 1 
HETATM 6 C C210 POV . . . X 6 200.84 189.098 171.204 1 52.23 ? C210 POV 1608 E 1 
HETATM 7 C C11 POV . . . X 6 194.91 186.88 157.845 1 52.23 ? C11 POV 1608 E 1 
HETATM 8 O O11 POV . . . X 6 192.857 188.887 160.292 1 52.23 ? O11 POV 1608 E 1 
HETATM 9 C C12 POV . . . X 6 194.929 185.373 157.74 1 52.23 ? C12 POV 1608 E 1 
HETATM 10 O O12 POV . . . X 6 194.3 187.33 159.027 1 52.23 ? O12 POV 1608 E 1 
HETATM 11 C C13 POV . . . X 6 197.223 185.256 156.834 1 52.23 ? C13 POV 1608 E 1 
HETATM 12 O O13 POV . . . X 6 193.039 189.182 157.807 1 52.23 ? O13 POV 1608 E 1 
HETATM 13 C C14 POV . . . X 6 195.815 183.291 156.933 1 52.23 ? C14 POV 1608 E 1 
HETATM 14 O O14 POV . . . X 6 191.768 187.117 158.763 1 52.23 ? O14 POV 1608 E 1 
HETATM 15 C C15 POV . . . X 6 195.345 185.011 155.312 1 52.23 ? C15 POV 1608 E 1 
HETATM 16 C C21 POV . . . X 6 195.524 190.223 162.695 1 52.23 ? C21 POV 1608 E 1 
HETATM 17 O O21 POV . . . X 6 194.57 191.08 162.341 1 52.23 ? O21 POV 1608 E 1 
HETATM 18 C C22 POV . . . X 6 196.412 190.81 163.755 1 52.23 ? C22 POV 1608 E 1 
HETATM 19 O O22 POV . . . X 6 195.651 189.124 162.219 1 52.23 ? O22 POV 1608 E 1 
HETATM 20 C C23 POV . . . X 6 197.447 189.834 164.287 1 52.23 ? C23 POV 1608 E 1 
HETATM 21 C C24 POV . . . X 6 198.248 190.434 165.432 1 52.23 ? C24 POV 1608 E 1 
HETATM 22 C C25 POV . . . X 6 199.328 189.497 165.952 1 52.23 ? C25 POV 1608 E 1 
HETATM 23 C C26 POV . . . X 6 200.084 190.07 167.142 1 52.23 ? C26 POV 1608 E 1 
HETATM 24 C C27 POV . . . X 6 201.217 189.172 167.62 1 52.23 ? C27 POV 1608 E 1 
HETATM 25 C C28 POV . . . X 6 201.837 189.653 168.932 1 52.23 ? C28 POV 1608 E 1 
HETATM 26 C C29 POV . . . X 6 200.825 189.732 170.032 1 52.23 ? C29 POV 1608 E 1 
HETATM 27 C C31 POV . . . X 6 192.966 193.346 163.791 1 52.23 ? C31 POV 1608 E 1 
HETATM 28 O O31 POV . . . X 6 192.586 192.088 163.602 1 52.23 ? O31 POV 1608 E 1 
HETATM 29 C C32 POV . . . X 6 193.438 193.558 165.202 1 52.23 ? C32 POV 1608 E 1 
HETATM 30 O O32 POV . . . X 6 192.926 194.19 162.931 1 52.23 ? O32 POV 1608 E 1 
HETATM 31 C C33 POV . . . X 6 193.864 194.981 165.513 1 52.23 ? C33 POV 1608 E 1 
HETATM 32 C C34 POV . . . X 6 194.12 195.181 167.001 1 52.23 ? C34 POV 1608 E 1 
HETATM 33 C C35 POV . . . X 6 195.256 194.344 167.57 1 52.23 ? C35 POV 1608 E 1 
HETATM 34 C C36 POV . . . X 6 195.65 194.798 168.971 1 52.23 ? C36 POV 1608 E 1 
HETATM 35 C C37 POV . . . X 6 196.695 193.918 169.642 1 52.23 ? C37 POV 1608 E 1 
HETATM 36 C C38 POV . . . X 6 196.154 192.54 170.005 1 52.23 ? C38 POV 1608 E 1 
#
_model_server_stats.io_time_ms              31 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    32 
_model_server_stats.query_time_ms           342 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           36 
#