data_7TYT # _model_server_result.job_id P9WwHzVJE-L9SO_vtUx_NA _model_server_result.datetime_utc '2024-11-27 06:03:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7tyt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Y","auth_seq_id":1609}' # _entry.id 7TYT # _exptl.entry_id 7TYT _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 734.039 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description PHOSPHATIDYLETHANOLAMINE _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7TYT _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7TYT _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 8 Q N N ? 8 T N N ? 8 U N N ? 8 V N N ? 8 Y N N ? 8 Z N N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 3 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n F NAG 1 F 1 NAG E 2010 NAG 3 n F NAG 2 F 2 NAG E 2011 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 110 A CYS 110 1_555 A SG CYS 142 A CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 B SG CYS 110 B CYS 110 1_555 B SG CYS 142 B CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 C SG CYS 110 C CYS 110 1_555 C SG CYS 142 C CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf4 D SG CYS 110 D CYS 110 1_555 D SG CYS 142 D CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf5 E SG CYS 6 E CYS 6 1_555 E SG CYS 26 E CYS 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? covale ? covale1 E ND2 ASN 10 E ASN 10 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale2 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? metalc ? metalc1 A O THR 130 A THR 130 1_555 H K K . A K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.584 ? metalc ? metalc2 A OG1 THR 130 A THR 130 1_555 H K K . A K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.257 ? metalc ? metalc3 H K K . A K 402 1_555 B O THR 130 B THR 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.616 ? metalc ? metalc4 H K K . A K 402 1_555 B OG1 THR 130 B THR 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.489 ? metalc ? metalc5 H K K . A K 402 1_555 C O THR 130 C THR 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.586 ? metalc ? metalc6 H K K . A K 402 1_555 C OG1 THR 130 C THR 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.395 ? metalc ? metalc7 H K K . A K 402 1_555 D O THR 130 D THR 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.619 ? # _chem_comp.formula 'C40 H80 N O8 P' _chem_comp.formula_weight 734.039 _chem_comp.id PTY _chem_comp.mon_nstd_flag . _chem_comp.name PHOSPHATIDYLETHANOLAMINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O4 PTY sing 693 n n C1 C6 PTY sing 694 n n C1 HC11 PTY sing 695 n n C1 HC12 PTY sing 696 n n C2 C3 PTY sing 697 n n C2 N1 PTY sing 698 n n C2 HC21 PTY sing 699 n n C2 HC22 PTY sing 700 n n C3 O11 PTY sing 701 n n C3 HC31 PTY sing 702 n n C3 HC32 PTY sing 703 n n O4 C30 PTY sing 704 n n C5 C6 PTY sing 705 n n C5 O14 PTY sing 706 n n C5 HC51 PTY sing 707 n n C5 HC52 PTY sing 708 n n C6 O7 PTY sing 709 n n C6 HC6 PTY sing 710 n n O7 C8 PTY sing 711 n n C8 O10 PTY doub 712 n n C8 C11 PTY sing 713 n n C11 C12 PTY sing 714 n n C11 H111 PTY sing 715 n n C11 H112 PTY sing 716 n n C12 C13 PTY sing 717 n n C12 H121 PTY sing 718 n n C12 H122 PTY sing 719 n n C13 C14 PTY sing 720 n n C13 H131 PTY sing 721 n n C13 H132 PTY sing 722 n n C14 C15 PTY sing 723 n n C14 H141 PTY sing 724 n n C14 H142 PTY sing 725 n n C15 C16 PTY sing 726 n n C15 H151 PTY sing 727 n n C15 H152 PTY sing 728 n n C16 C17 PTY sing 729 n n C16 H161 PTY sing 730 n n C16 H162 PTY sing 731 n n C17 C18 PTY sing 732 n n C17 H171 PTY sing 733 n n C17 H172 PTY sing 734 n n C18 C19 PTY sing 735 n n C18 H181 PTY sing 736 n n C18 H182 PTY sing 737 n n C19 C20 PTY sing 738 n n C19 H191 PTY sing 739 n n C19 H192 PTY sing 740 n n C20 C21 PTY sing 741 n n C20 H201 PTY sing 742 n n C20 H202 PTY sing 743 n n C21 C22 PTY sing 744 n n C21 H211 PTY sing 745 n n C21 H212 PTY sing 746 n n C22 C23 PTY sing 747 n n C22 H221 PTY sing 748 n n C22 H222 PTY sing 749 n n C23 C24 PTY sing 750 n n C23 H231 PTY sing 751 n n C23 H232 PTY sing 752 n n C24 C25 PTY sing 753 n n C24 H241 PTY sing 754 n n C24 H242 PTY sing 755 n n C25 C26 PTY sing 756 n n C25 H251 PTY sing 757 n n C25 H252 PTY sing 758 n n C26 C27 PTY sing 759 n n C26 H261 PTY sing 760 n n C26 H262 PTY sing 761 n n C27 C28 PTY sing 762 n n C27 H271 PTY sing 763 n n C27 H272 PTY sing 764 n n C28 C29 PTY sing 765 n n C28 H281 PTY sing 766 n n C28 H282 PTY sing 767 n n C29 H291 PTY sing 768 n n C29 H292 PTY sing 769 n n C29 H293 PTY sing 770 n n C30 C31 PTY sing 771 n n C30 O30 PTY doub 772 n n C31 C32 PTY sing 773 n n C31 H311 PTY sing 774 n n C31 H312 PTY sing 775 n n C32 C33 PTY sing 776 n n C32 H321 PTY sing 777 n n C32 H322 PTY sing 778 n n C33 C34 PTY sing 779 n n C33 H331 PTY sing 780 n n C33 H332 PTY sing 781 n n C34 C35 PTY sing 782 n n C34 H341 PTY sing 783 n n C34 H342 PTY sing 784 n n C35 C36 PTY sing 785 n n C35 H351 PTY sing 786 n n C35 H352 PTY sing 787 n n C36 C37 PTY sing 788 n n C36 H361 PTY sing 789 n n C36 H362 PTY sing 790 n n C37 C38 PTY sing 791 n n C37 H371 PTY sing 792 n n C37 H372 PTY sing 793 n n C38 C39 PTY sing 794 n n C38 H381 PTY sing 795 n n C38 H382 PTY sing 796 n n C39 C40 PTY sing 797 n n C39 H391 PTY sing 798 n n C39 H392 PTY sing 799 n n C40 C41 PTY sing 800 n n C40 H401 PTY sing 801 n n C40 H402 PTY sing 802 n n C41 C42 PTY sing 803 n n C41 H411 PTY sing 804 n n C41 H412 PTY sing 805 n n C42 C43 PTY sing 806 n n C42 H421 PTY sing 807 n n C42 H422 PTY sing 808 n n C43 C44 PTY sing 809 n n C43 H431 PTY sing 810 n n C43 H432 PTY sing 811 n n C44 H441 PTY sing 812 n n C44 H442 PTY sing 813 n n C44 H443 PTY sing 814 n n P1 O11 PTY sing 815 n n P1 O12 PTY sing 816 n n P1 O13 PTY doub 817 n n P1 O14 PTY sing 818 n n O12 H12O PTY sing 819 n n N1 HN11 PTY sing 820 n n N1 HN12 PTY sing 821 n n # _atom_sites.entry_id 7TYT _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 ATP A 1 401 401 ATP ATP . H 5 K A 1 402 504 K K . I 6 POV A 1 403 505 POV POV . J 4 ATP B 1 401 401 ATP ATP . K 6 POV B 1 402 505 POV POV . L 7 P5S B 1 403 506 P5S P5S . M 4 ATP B 1 404 401 ATP ATP . N 6 POV C 1 401 505 POV POV . O 4 ATP D 1 401 401 ATP ATP . P 6 POV D 1 402 505 POV POV . Q 8 PTY E 1 1601 506 PTY PTY . R 9 BJX E 1 1602 2001 BJX BJX . S 4 ATP E 1 1603 2002 ATP ATP . T 8 PTY E 1 1604 2003 PTY PTY . U 8 PTY E 1 1605 2004 PTY PTY . V 8 PTY E 1 1606 2005 PTY PTY . W 7 P5S E 1 1607 2006 P5S P5S . X 6 POV E 1 1608 2007 POV POV . Y 8 PTY E 1 1609 2008 PTY PTY . Z 8 PTY E 1 1610 2009 PTY PTY . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PTY . . . Y 8 212.433 181.036 187.131 1 45.14 ? C1 PTY 1609 E 1 HETATM 2 C C2 PTY . . . Y 8 217.217 183.317 193.521 1 45.14 ? C2 PTY 1609 E 1 HETATM 3 C C3 PTY . . . Y 8 216.847 184.125 192.299 1 45.14 ? C3 PTY 1609 E 1 HETATM 4 O O4 PTY . . . Y 8 212.655 180.952 185.725 1 45.14 ? O4 PTY 1609 E 1 HETATM 5 C C5 PTY . . . Y 8 213.595 181.788 189.227 1 45.14 ? C5 PTY 1609 E 1 HETATM 6 C C6 PTY . . . Y 8 213.657 181.709 187.714 1 45.14 ? C6 PTY 1609 E 1 HETATM 7 O O7 PTY . . . Y 8 213.757 182.996 187.085 1 45.14 ? O7 PTY 1609 E 1 HETATM 8 C C8 PTY . . . Y 8 213.401 184.119 187.709 1 45.14 ? C8 PTY 1609 E 1 HETATM 9 O O10 PTY . . . Y 8 214.148 184.747 188.415 1 45.14 ? O10 PTY 1609 E 1 HETATM 10 C C11 PTY . . . Y 8 211.985 184.518 187.389 1 45.14 ? C11 PTY 1609 E 1 HETATM 11 C C12 PTY . . . Y 8 211.872 185.896 186.757 1 45.14 ? C12 PTY 1609 E 1 HETATM 12 C C13 PTY . . . Y 8 210.561 186.106 186.007 1 45.14 ? C13 PTY 1609 E 1 HETATM 13 C C14 PTY . . . Y 8 210.655 185.664 184.553 1 45.14 ? C14 PTY 1609 E 1 HETATM 14 C C15 PTY . . . Y 8 211.674 186.45 183.738 1 45.14 ? C15 PTY 1609 E 1 HETATM 15 C C16 PTY . . . Y 8 212.155 185.691 182.507 1 45.14 ? C16 PTY 1609 E 1 HETATM 16 C C17 PTY . . . Y 8 213.298 186.374 181.764 1 45.14 ? C17 PTY 1609 E 1 HETATM 17 C C18 PTY . . . Y 8 214.066 185.423 180.852 1 45.14 ? C18 PTY 1609 E 1 HETATM 18 C C19 PTY . . . Y 8 215.284 186.056 180.189 1 45.14 ? C19 PTY 1609 E 1 HETATM 19 C C20 PTY . . . Y 8 216.157 185.043 179.461 1 45.14 ? C20 PTY 1609 E 1 HETATM 20 C C30 PTY . . . Y 8 211.925 181.722 184.926 1 45.14 ? C30 PTY 1609 E 1 HETATM 21 C C31 PTY . . . Y 8 210.704 181.021 184.41 1 45.14 ? C31 PTY 1609 E 1 HETATM 22 O O30 PTY . . . Y 8 212.226 182.853 184.656 1 45.14 ? O30 PTY 1609 E 1 HETATM 23 C C32 PTY . . . Y 8 210.319 181.527 183.033 1 45.14 ? C32 PTY 1609 E 1 HETATM 24 C C33 PTY . . . Y 8 209.084 180.838 182.471 1 45.14 ? C33 PTY 1609 E 1 HETATM 25 C C34 PTY . . . Y 8 208.643 181.455 181.153 1 45.14 ? C34 PTY 1609 E 1 HETATM 26 C C35 PTY . . . Y 8 207.352 180.861 180.61 1 45.14 ? C35 PTY 1609 E 1 HETATM 27 P P1 PTY . . . Y 8 214.769 182.962 191.228 1 45.14 ? P1 PTY 1609 E 1 HETATM 28 O O11 PTY . . . Y 8 216.377 183.255 191.279 1 45.14 ? O11 PTY 1609 E 1 HETATM 29 O O12 PTY . . . Y 8 214.388 181.947 192.259 1 45.14 ? O12 PTY 1609 E 1 HETATM 30 O O13 PTY . . . Y 8 214.019 184.255 191.166 1 45.14 ? O13 PTY 1609 E 1 HETATM 31 O O14 PTY . . . Y 8 214.818 182.27 189.736 1 45.14 ? O14 PTY 1609 E 1 HETATM 32 N N1 PTY . . . Y 8 218.356 182.452 193.26 1 45.14 ? N1 PTY 1609 E 1 # _model_server_stats.io_time_ms 30 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 65 _model_server_stats.query_time_ms 263 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 32 #