data_7TYT # _model_server_result.job_id MORf6Cn9i9b2hMAXBTdehg _model_server_result.datetime_utc '2024-11-05 19:52:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7tyt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Z","auth_seq_id":1610}' # _entry.id 7TYT # _exptl.entry_id 7TYT _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 734.039 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description PHOSPHATIDYLETHANOLAMINE _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7TYT _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7TYT _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 8 Q N N ? 8 T N N ? 8 U N N ? 8 V N N ? 8 Y N N ? 8 Z N N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 3 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n F NAG 1 F 1 NAG E 2010 NAG 3 n F NAG 2 F 2 NAG E 2011 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 110 A CYS 110 1_555 A SG CYS 142 A CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 B SG CYS 110 B CYS 110 1_555 B SG CYS 142 B CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 C SG CYS 110 C CYS 110 1_555 C SG CYS 142 C CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf4 D SG CYS 110 D CYS 110 1_555 D SG CYS 142 D CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf5 E SG CYS 6 E CYS 6 1_555 E SG CYS 26 E CYS 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? covale ? covale1 E ND2 ASN 10 E ASN 10 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale2 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? metalc ? metalc1 A O THR 130 A THR 130 1_555 H K K . A K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.584 ? metalc ? metalc2 A OG1 THR 130 A THR 130 1_555 H K K . A K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.257 ? metalc ? metalc3 H K K . A K 402 1_555 B O THR 130 B THR 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.616 ? metalc ? metalc4 H K K . A K 402 1_555 B OG1 THR 130 B THR 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.489 ? metalc ? metalc5 H K K . A K 402 1_555 C O THR 130 C THR 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.586 ? metalc ? metalc6 H K K . A K 402 1_555 C OG1 THR 130 C THR 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.395 ? metalc ? metalc7 H K K . A K 402 1_555 D O THR 130 D THR 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.619 ? # _chem_comp.formula 'C40 H80 N O8 P' _chem_comp.formula_weight 734.039 _chem_comp.id PTY _chem_comp.mon_nstd_flag . _chem_comp.name PHOSPHATIDYLETHANOLAMINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7TYT _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 ATP A 1 401 401 ATP ATP . H 5 K A 1 402 504 K K . I 6 POV A 1 403 505 POV POV . J 4 ATP B 1 401 401 ATP ATP . K 6 POV B 1 402 505 POV POV . L 7 P5S B 1 403 506 P5S P5S . M 4 ATP B 1 404 401 ATP ATP . N 6 POV C 1 401 505 POV POV . O 4 ATP D 1 401 401 ATP ATP . P 6 POV D 1 402 505 POV POV . Q 8 PTY E 1 1601 506 PTY PTY . R 9 BJX E 1 1602 2001 BJX BJX . S 4 ATP E 1 1603 2002 ATP ATP . T 8 PTY E 1 1604 2003 PTY PTY . U 8 PTY E 1 1605 2004 PTY PTY . V 8 PTY E 1 1606 2005 PTY PTY . W 7 P5S E 1 1607 2006 P5S P5S . X 6 POV E 1 1608 2007 POV POV . Y 8 PTY E 1 1609 2008 PTY PTY . Z 8 PTY E 1 1610 2009 PTY PTY . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PTY . . . Z 8 189.681 167.552 166.094 1 48.29 ? C1 PTY 1610 E 1 HETATM 2 C C2 PTY . . . Z 8 188.469 168.805 159.479 1 48.29 ? C2 PTY 1610 E 1 HETATM 3 C C3 PTY . . . Z 8 189.778 168.588 160.195 1 48.29 ? C3 PTY 1610 E 1 HETATM 4 O O4 PTY . . . Z 8 188.398 167.293 166.662 1 48.29 ? O4 PTY 1610 E 1 HETATM 5 C C5 PTY . . . Z 8 188.943 169.672 165.015 1 48.29 ? C5 PTY 1610 E 1 HETATM 6 C C6 PTY . . . Z 8 189.844 169.055 166.063 1 48.29 ? C6 PTY 1610 E 1 HETATM 7 O O7 PTY . . . Z 8 191.224 169.326 165.791 1 48.29 ? O7 PTY 1610 E 1 HETATM 8 C C8 PTY . . . Z 8 191.695 170.57 165.88 1 48.29 ? C8 PTY 1610 E 1 HETATM 9 O O10 PTY . . . Z 8 191.811 171.305 164.935 1 48.29 ? O10 PTY 1610 E 1 HETATM 10 C C11 PTY . . . Z 8 192.058 170.93 167.293 1 48.29 ? C11 PTY 1610 E 1 HETATM 11 C C12 PTY . . . Z 8 192.28 172.42 167.491 1 48.29 ? C12 PTY 1610 E 1 HETATM 12 C C13 PTY . . . Z 8 192.628 172.755 168.934 1 48.29 ? C13 PTY 1610 E 1 HETATM 13 C C14 PTY . . . Z 8 194.053 172.367 169.289 1 48.29 ? C14 PTY 1610 E 1 HETATM 14 C C15 PTY . . . Z 8 194.351 172.426 170.78 1 48.29 ? C15 PTY 1610 E 1 HETATM 15 C C16 PTY . . . Z 8 195.842 172.56 171.061 1 48.29 ? C16 PTY 1610 E 1 HETATM 16 C C17 PTY . . . Z 8 196.221 172.371 172.523 1 48.29 ? C17 PTY 1610 E 1 HETATM 17 C C18 PTY . . . Z 8 197.495 173.12 172.89 1 48.29 ? C18 PTY 1610 E 1 HETATM 18 C C19 PTY . . . Z 8 197.415 174.623 172.666 1 48.29 ? C19 PTY 1610 E 1 HETATM 19 C C20 PTY . . . Z 8 198.553 175.381 173.337 1 48.29 ? C20 PTY 1610 E 1 HETATM 20 C C30 PTY . . . Z 8 188.339 167.194 167.986 1 48.29 ? C30 PTY 1610 E 1 HETATM 21 C C31 PTY . . . Z 8 186.924 167.169 168.488 1 48.29 ? C31 PTY 1610 E 1 HETATM 22 O O30 PTY . . . Z 8 189.322 167.135 168.68 1 48.29 ? O30 PTY 1610 E 1 HETATM 23 C C32 PTY . . . Z 8 186.852 167.039 170.001 1 48.29 ? C32 PTY 1610 E 1 HETATM 24 C C33 PTY . . . Z 8 185.532 167.534 170.575 1 48.29 ? C33 PTY 1610 E 1 HETATM 25 C C34 PTY . . . Z 8 185.587 167.687 172.089 1 48.29 ? C34 PTY 1610 E 1 HETATM 26 C C35 PTY . . . Z 8 186.693 168.613 172.577 1 48.29 ? C35 PTY 1610 E 1 HETATM 27 P P1 PTY . . . Z 8 188.916 168.561 162.66 1 48.29 ? P1 PTY 1610 E 1 HETATM 28 O O11 PTY . . . Z 8 189.697 169.288 161.424 1 48.29 ? O11 PTY 1610 E 1 HETATM 29 O O12 PTY . . . Z 8 187.443 168.802 162.567 1 48.29 ? O12 PTY 1610 E 1 HETATM 30 O O13 PTY . . . Z 8 189.432 167.174 162.885 1 48.29 ? O13 PTY 1610 E 1 HETATM 31 O O14 PTY . . . Z 8 189.571 169.593 163.759 1 48.29 ? O14 PTY 1610 E 1 HETATM 32 N N1 PTY . . . Z 8 188.14 170.22 159.449 1 48.29 ? N1 PTY 1610 E 1 # _model_server_stats.io_time_ms 35 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 32 #