data_7TYT # _model_server_result.job_id 2SXGN2qXo-MA02NPBBR2zA _model_server_result.datetime_utc '2024-11-05 19:54:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7tyt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":403}' # _entry.id 7TYT # _exptl.entry_id 7TYT _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 760.076 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7TYT _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7TYT _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 I N N ? 6 K N N ? 6 N N N ? 6 P N N ? 6 X N N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 3 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n F NAG 1 F 1 NAG E 2010 NAG 3 n F NAG 2 F 2 NAG E 2011 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 110 A CYS 110 1_555 A SG CYS 142 A CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 B SG CYS 110 B CYS 110 1_555 B SG CYS 142 B CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 C SG CYS 110 C CYS 110 1_555 C SG CYS 142 C CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf4 D SG CYS 110 D CYS 110 1_555 D SG CYS 142 D CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf5 E SG CYS 6 E CYS 6 1_555 E SG CYS 26 E CYS 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? covale ? covale1 E ND2 ASN 10 E ASN 10 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale2 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? metalc ? metalc1 A O THR 130 A THR 130 1_555 H K K . A K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.584 ? metalc ? metalc2 A OG1 THR 130 A THR 130 1_555 H K K . A K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.257 ? metalc ? metalc3 H K K . A K 402 1_555 B O THR 130 B THR 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.616 ? metalc ? metalc4 H K K . A K 402 1_555 B OG1 THR 130 B THR 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.489 ? metalc ? metalc5 H K K . A K 402 1_555 C O THR 130 C THR 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.586 ? metalc ? metalc6 H K K . A K 402 1_555 C OG1 THR 130 C THR 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.395 ? metalc ? metalc7 H K K . A K 402 1_555 D O THR 130 D THR 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.619 ? # _chem_comp.formula 'C42 H82 N O8 P' _chem_comp.formula_weight 760.076 _chem_comp.id POV _chem_comp.mon_nstd_flag . _chem_comp.name '(2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms POPC # _atom_sites.entry_id 7TYT _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 ATP A 1 401 401 ATP ATP . H 5 K A 1 402 504 K K . I 6 POV A 1 403 505 POV POV . J 4 ATP B 1 401 401 ATP ATP . K 6 POV B 1 402 505 POV POV . L 7 P5S B 1 403 506 P5S P5S . M 4 ATP B 1 404 401 ATP ATP . N 6 POV C 1 401 505 POV POV . O 4 ATP D 1 401 401 ATP ATP . P 6 POV D 1 402 505 POV POV . Q 8 PTY E 1 1601 506 PTY PTY . R 9 BJX E 1 1602 2001 BJX BJX . S 4 ATP E 1 1603 2002 ATP ATP . T 8 PTY E 1 1604 2003 PTY PTY . U 8 PTY E 1 1605 2004 PTY PTY . V 8 PTY E 1 1606 2005 PTY PTY . W 7 P5S E 1 1607 2006 P5S P5S . X 6 POV E 1 1608 2007 POV POV . Y 8 PTY E 1 1609 2008 PTY PTY . Z 8 PTY E 1 1610 2009 PTY PTY . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N POV . . . I 6 178.833 169.648 202.353 1 31.29 ? N POV 403 A 1 HETATM 2 P P POV . . . I 6 179.457 169.951 197.421 1 31.29 ? P POV 403 A 1 HETATM 3 C C1 POV . . . I 6 180.724 167.883 196.398 1 31.29 ? C1 POV 403 A 1 HETATM 4 C C2 POV . . . I 6 181.751 167.865 195.267 1 31.29 ? C2 POV 403 A 1 HETATM 5 C C3 POV . . . I 6 181.87 169.203 194.581 1 31.29 ? C3 POV 403 A 1 HETATM 6 C C210 POV . . . I 6 179.613 161.589 186.531 1 31.29 ? C210 POV 403 A 1 HETATM 7 C C11 POV . . . I 6 178.635 170.154 199.862 1 31.29 ? C11 POV 403 A 1 HETATM 8 O O11 POV . . . I 6 180.8 169.149 197.008 1 31.29 ? O11 POV 403 A 1 HETATM 9 C C12 POV . . . I 6 179.377 170.369 201.156 1 31.29 ? C12 POV 403 A 1 HETATM 10 O O12 POV . . . I 6 179.356 169.363 198.957 1 31.29 ? O12 POV 403 A 1 HETATM 11 C C13 POV . . . I 6 178.677 168.197 202.067 1 31.29 ? C13 POV 403 A 1 HETATM 12 O O13 POV . . . I 6 179.791 171.405 197.501 1 31.29 ? O13 POV 403 A 1 HETATM 13 C C14 POV . . . I 6 179.819 169.821 203.453 1 31.29 ? C14 POV 403 A 1 HETATM 14 O O14 POV . . . I 6 178.285 169.48 196.631 1 31.29 ? O14 POV 403 A 1 HETATM 15 C C15 POV . . . I 6 177.534 170.226 202.794 1 31.29 ? C15 POV 403 A 1 HETATM 16 C C21 POV . . . I 6 182.336 166.036 193.881 1 31.29 ? C21 POV 403 A 1 HETATM 17 O O21 POV . . . I 6 181.417 166.916 194.26 1 31.29 ? O21 POV 403 A 1 HETATM 18 C C22 POV . . . I 6 181.739 164.958 193.016 1 31.29 ? C22 POV 403 A 1 HETATM 19 O O22 POV . . . I 6 183.494 166.117 194.201 1 31.29 ? O22 POV 403 A 1 HETATM 20 C C23 POV . . . I 6 180.827 163.992 193.756 1 31.29 ? C23 POV 403 A 1 HETATM 21 C C24 POV . . . I 6 180.736 162.642 193.056 1 31.29 ? C24 POV 403 A 1 HETATM 22 C C25 POV . . . I 6 179.936 162.675 191.76 1 31.29 ? C25 POV 403 A 1 HETATM 23 C C26 POV . . . I 6 179.309 161.328 191.422 1 31.29 ? C26 POV 403 A 1 HETATM 24 C C27 POV . . . I 6 178.706 161.264 190.025 1 31.29 ? C27 POV 403 A 1 HETATM 25 C C28 POV . . . I 6 179.721 160.847 188.96 1 31.29 ? C28 POV 403 A 1 HETATM 26 C C29 POV . . . I 6 179.152 160.903 187.576 1 31.29 ? C29 POV 403 A 1 HETATM 27 C C31 POV . . . I 6 181.726 169.978 192.364 1 31.29 ? C31 POV 403 A 1 HETATM 28 O O31 POV . . . I 6 182.002 168.98 193.188 1 31.29 ? O31 POV 403 A 1 HETATM 29 C C32 POV . . . I 6 181.93 169.548 190.941 1 31.29 ? C32 POV 403 A 1 HETATM 30 O O32 POV . . . I 6 181.364 171.065 192.731 1 31.29 ? O32 POV 403 A 1 HETATM 31 C C33 POV . . . I 6 181.488 170.537 189.878 1 31.29 ? C33 POV 403 A 1 HETATM 32 C C34 POV . . . I 6 181.655 169.912 188.501 1 31.29 ? C34 POV 403 A 1 HETATM 33 C C35 POV . . . I 6 180.79 170.527 187.412 1 31.29 ? C35 POV 403 A 1 HETATM 34 C C36 POV . . . I 6 180.789 169.702 186.13 1 31.29 ? C36 POV 403 A 1 HETATM 35 C C37 POV . . . I 6 181.771 168.536 186.118 1 31.29 ? C37 POV 403 A 1 HETATM 36 C C38 POV . . . I 6 181.677 167.696 184.849 1 31.29 ? C38 POV 403 A 1 # _model_server_stats.io_time_ms 28 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 42 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 36 #