data_7TYW # _model_server_result.job_id r2rR-YiHSGkbwDXMDlm0aw _model_server_result.datetime_utc '2024-12-03 18:37:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7tyw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":504}' # _entry.id 7TYW # _exptl.entry_id 7TYW _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 486.726 _entity.id 10 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CHOLESTEROL HEMISUCCINATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7TYW _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7TYW _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details heptameric _pdbx_struct_assembly.oligomeric_count 7 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 10 K N N ? 10 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 28 E CYS 27 1_555 A SG CYS 83 E CYS 82 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 A SG CYS 41 E CYS 40 1_555 A SG CYS 73 E CYS 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf3 A SG CYS 58 E CYS 57 1_555 A SG CYS 105 E CYS 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf4 B SG CYS 1 P CYS 1 1_555 B SG CYS 7 P CYS 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf5 C SG CYS 63 R CYS 55 1_555 C SG CYS 89 R CYS 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf6 C SG CYS 80 R CYS 72 1_555 C SG CYS 120 R CYS 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf7 C SG CYS 103 R CYS 95 1_555 C SG CYS 142 R CYS 134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf8 C SG CYS 227 R CYS 219 1_555 C SG CYS 297 R CYS 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf9 G SG CYS 22 N CYS 22 1_555 G SG CYS 96 N CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? disulf ? disulf10 G SG CYS 99 N CYS 99 1_555 G SG CYS 107 N CYS 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? covale ? covale1 B C PRO 32 P PRO 32 1_555 B N NH2 33 P NH2 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale2 C ND2 ASN 81 R ASN 73 1_555 J C1 NAG . R NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale3 C ND2 ASN 138 R ASN 130 1_555 I C1 NAG . R NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? # _chem_comp.formula 'C31 H50 O4' _chem_comp.formula_weight 486.726 _chem_comp.id Y01 _chem_comp.mon_nstd_flag . _chem_comp.name 'CHOLESTEROL HEMISUCCINATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAA CBA Y01 sing 457 n n CBA CAB Y01 sing 458 n n CBA CAN Y01 sing 459 n n CAN CAJ Y01 sing 460 n n CAJ CAO Y01 sing 461 n n CAO CBB Y01 sing 462 n n CBB CAC Y01 sing 463 n n CBB CBE Y01 sing 464 n n CBE CAP Y01 sing 465 n n CBE CBI Y01 sing 466 n n CAP CAQ Y01 sing 467 n n CAQ CBG Y01 sing 468 n n CBG CBI Y01 sing 469 n n CBG CBD Y01 sing 470 n n CBI CAE Y01 sing 471 n n CBI CAU Y01 sing 472 n n CAU CAS Y01 sing 473 n n CAS CBF Y01 sing 474 n n CBF CBD Y01 sing 475 n n CBF CBH Y01 sing 476 n n CBD CAK Y01 sing 477 n n CAK CAI Y01 sing 478 n n CAI CAZ Y01 doub 479 n n CAZ CAV Y01 sing 480 n n CAZ CBH Y01 sing 481 n n CAV CBC Y01 sing 482 n n CBH CAD Y01 sing 483 n n CBH CAT Y01 sing 484 n n CAT CAR Y01 sing 485 n n CAR CBC Y01 sing 486 n n CBC OAW Y01 sing 487 n n OAW CAY Y01 sing 488 n n CAY OAG Y01 doub 489 n n CAY CAM Y01 sing 490 n n CAM CAL Y01 sing 491 n n CAL CAX Y01 sing 492 n n CAX OAH Y01 sing 493 n n CAX OAF Y01 doub 494 n n CAA HAA1 Y01 sing 495 n n CAA HAA2 Y01 sing 496 n n CAA HAA3 Y01 sing 497 n n CBA HBA Y01 sing 498 n n CAB HAB1 Y01 sing 499 n n CAB HAB2 Y01 sing 500 n n CAB HAB3 Y01 sing 501 n n CAN HAN1 Y01 sing 502 n n CAN HAN2 Y01 sing 503 n n CAJ HAJ1 Y01 sing 504 n n CAJ HAJ2 Y01 sing 505 n n CAO HAO1 Y01 sing 506 n n CAO HAO2 Y01 sing 507 n n CBB HBB Y01 sing 508 n n CAC HAC1 Y01 sing 509 n n CAC HAC2 Y01 sing 510 n n CAC HAC3 Y01 sing 511 n n CBE HBE Y01 sing 512 n n CAP HAP1 Y01 sing 513 n n CAP HAP2 Y01 sing 514 n n CAQ HAQ1 Y01 sing 515 n n CAQ HAQ2 Y01 sing 516 n n CBG HBG Y01 sing 517 n n CBD HBD Y01 sing 518 n n CAE HAE1 Y01 sing 519 n n CAE HAE2 Y01 sing 520 n n CAE HAE3 Y01 sing 521 n n CAU HAU1 Y01 sing 522 n n CAU HAU2 Y01 sing 523 n n CAS HAS1 Y01 sing 524 n n CAS HAS2 Y01 sing 525 n n CBF HBF Y01 sing 526 n n CAK HAK1 Y01 sing 527 n n CAK HAK2 Y01 sing 528 n n CAI HAI Y01 sing 529 n n CAV HAV1 Y01 sing 530 n n CAV HAV2 Y01 sing 531 n n CBC HBC Y01 sing 532 n n CAD HAD1 Y01 sing 533 n n CAD HAD2 Y01 sing 534 n n CAD HAD3 Y01 sing 535 n n CAT HAT1 Y01 sing 536 n n CAT HAT2 Y01 sing 537 n n CAR HAR1 Y01 sing 538 n n CAR HAR2 Y01 sing 539 n n CAM HAM1 Y01 sing 540 n n CAM HAM2 Y01 sing 541 n n CAL HAL1 Y01 sing 542 n n CAL HAL2 Y01 sing 543 n n OAH HAH Y01 sing 544 n n # _atom_sites.entry_id 7TYW _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code H 8 PLM E 1 201 3 PLM PLM . I 9 NAG R 1 501 609 NAG NAG . J 9 NAG R 1 502 610 NAG NAG . K 10 Y01 R 1 503 1 Y01 Y01 . L 10 Y01 R 1 504 2 Y01 Y01 . M 8 PLM R 1 505 4 PLM PLM . N 11 HOH P 1 101 2 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA Y01 . . . L 10 132.51 145.918 106.045 1 61.77 ? CAA Y01 504 R 1 HETATM 2 C CBA Y01 . . . L 10 132.639 147.358 106.518 1 61.77 ? CBA Y01 504 R 1 HETATM 3 C CAB Y01 . . . L 10 133.169 148.241 105.4 1 61.77 ? CAB Y01 504 R 1 HETATM 4 C CAN Y01 . . . L 10 133.512 147.459 107.769 1 61.77 ? CAN Y01 504 R 1 HETATM 5 C CAJ Y01 . . . L 10 134.912 146.92 107.626 1 61.77 ? CAJ Y01 504 R 1 HETATM 6 C CAO Y01 . . . L 10 135.77 147.167 108.842 1 61.77 ? CAO Y01 504 R 1 HETATM 7 C CBB Y01 . . . L 10 137.21 146.643 108.742 1 61.77 ? CBB Y01 504 R 1 HETATM 8 C CAC Y01 . . . L 10 137.88 147.178 107.48 1 61.77 ? CAC Y01 504 R 1 HETATM 9 C CBE Y01 . . . L 10 138.01 146.976 110.017 1 61.77 ? CBE Y01 504 R 1 HETATM 10 C CAP Y01 . . . L 10 137.629 148.341 110.652 1 61.77 ? CAP Y01 504 R 1 HETATM 11 C CAQ Y01 . . . L 10 138.024 148.242 112.14 1 61.77 ? CAQ Y01 504 R 1 HETATM 12 C CBG Y01 . . . L 10 138.824 146.944 112.208 1 61.77 ? CBG Y01 504 R 1 HETATM 13 C CBI Y01 . . . L 10 138.072 146.01 111.238 1 61.77 ? CBI Y01 504 R 1 HETATM 14 C CAE Y01 . . . L 10 136.662 145.667 111.75 1 61.77 ? CAE Y01 504 R 1 HETATM 15 C CAU Y01 . . . L 10 138.914 144.74 111.071 1 61.77 ? CAU Y01 504 R 1 HETATM 16 C CAS Y01 . . . L 10 139.232 144.085 112.421 1 61.77 ? CAS Y01 504 R 1 HETATM 17 C CBF Y01 . . . L 10 139.956 145.046 113.376 1 61.77 ? CBF Y01 504 R 1 HETATM 18 C CBD Y01 . . . L 10 139.151 146.346 113.57 1 61.77 ? CBD Y01 504 R 1 HETATM 19 C CAK Y01 . . . L 10 139.908 147.354 114.438 1 61.77 ? CAK Y01 504 R 1 HETATM 20 C CAI Y01 . . . L 10 140.773 146.733 115.491 1 61.77 ? CAI Y01 504 R 1 HETATM 21 C CAZ Y01 . . . L 10 141.118 145.455 115.508 1 61.77 ? CAZ Y01 504 R 1 HETATM 22 C CAV Y01 . . . L 10 142.374 144.979 116.208 1 61.77 ? CAV Y01 504 R 1 HETATM 23 C CBH Y01 . . . L 10 140.325 144.409 114.742 1 61.77 ? CBH Y01 504 R 1 HETATM 24 C CAD Y01 . . . L 10 139.06 144.03 115.538 1 61.77 ? CAD Y01 504 R 1 HETATM 25 C CAT Y01 . . . L 10 141.238 143.178 114.543 1 61.77 ? CAT Y01 504 R 1 HETATM 26 C CAR Y01 . . . L 10 141.791 142.585 115.844 1 61.77 ? CAR Y01 504 R 1 HETATM 27 C CBC Y01 . . . L 10 142.183 143.629 116.861 1 61.77 ? CBC Y01 504 R 1 HETATM 28 O OAW Y01 . . . L 10 141.113 143.779 117.842 1 61.77 ? OAW Y01 504 R 1 HETATM 29 C CAY Y01 . . . L 10 141.345 144.475 118.957 1 61.77 ? CAY Y01 504 R 1 HETATM 30 O OAG Y01 . . . L 10 140.519 145.157 119.49 1 61.77 ? OAG Y01 504 R 1 HETATM 31 C CAM Y01 . . . L 10 142.73 144.243 119.511 1 61.77 ? CAM Y01 504 R 1 HETATM 32 C CAL Y01 . . . L 10 143.61 145.471 119.651 1 61.77 ? CAL Y01 504 R 1 HETATM 33 C CAX Y01 . . . L 10 143.037 146.571 120.529 1 61.77 ? CAX Y01 504 R 1 HETATM 34 O OAH Y01 . . . L 10 142.785 146.304 121.721 1 61.77 ? OAH Y01 504 R 1 HETATM 35 O OAF Y01 . . . L 10 142.844 147.692 120.018 1 61.77 ? OAF Y01 504 R 1 # _model_server_stats.io_time_ms 47 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 35 #