data_7TYY
#
_model_server_result.job_id            JPuzpwxyyIlPISiFvmtdSg 
_model_server_result.datetime_utc      '2025-03-05 18:17:45' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7tyy 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":503}' 
#
_entry.id    7TYY 
#
_exptl.entry_id    7TYY 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              486.726 
_entity.id                          10 
_entity.src_method                  nat 
_entity.type                        non-polymer 
_entity.pdbx_description            'CHOLESTEROL HEMISUCCINATE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7TYY 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7TYY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    heptameric 
_pdbx_struct_assembly.oligomeric_count      7 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 10 J N N 
? 10 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 49 E CYS 68 1_555 A SG CYS 80 E CYS 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf2 A SG CYS 65 E CYS 84 1_555 A SG CYS 112 E CYS 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf3 B SG CYS 1 P CYS 1 1_555 B SG CYS 7 P CYS 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? 
disulf ? disulf4 C SG CYS 63 R CYS 55 1_555 C SG CYS 89 R CYS 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf5 C SG CYS 80 R CYS 72 1_555 C SG CYS 120 R CYS 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf6 C SG CYS 103 R CYS 95 1_555 C SG CYS 142 R CYS 134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf7 C SG CYS 227 R CYS 219 1_555 C SG CYS 297 R CYS 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf8 G SG CYS 22 N CYS 22 1_555 G SG CYS 96 N CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf9 G SG CYS 99 N CYS 99 1_555 G SG CYS 107 N CYS 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
covale ? covale1 B C PRO 32 P PRO 32 1_555 B N NH2 33 P NH2 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? 
covale ? covale2 C ND2 ASN 138 R ASN 130 1_555 H C1 NAG . R NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? 
#
_chem_comp.formula           'C31 H50 O4' 
_chem_comp.formula_weight    486.726 
_chem_comp.id                Y01 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CHOLESTEROL HEMISUCCINATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAA CBA Y01 sing 457 n n 
CBA CAB Y01 sing 458 n n 
CBA CAN Y01 sing 459 n n 
CAN CAJ Y01 sing 460 n n 
CAJ CAO Y01 sing 461 n n 
CAO CBB Y01 sing 462 n n 
CBB CAC Y01 sing 463 n n 
CBB CBE Y01 sing 464 n n 
CBE CAP Y01 sing 465 n n 
CBE CBI Y01 sing 466 n n 
CAP CAQ Y01 sing 467 n n 
CAQ CBG Y01 sing 468 n n 
CBG CBI Y01 sing 469 n n 
CBG CBD Y01 sing 470 n n 
CBI CAE Y01 sing 471 n n 
CBI CAU Y01 sing 472 n n 
CAU CAS Y01 sing 473 n n 
CAS CBF Y01 sing 474 n n 
CBF CBD Y01 sing 475 n n 
CBF CBH Y01 sing 476 n n 
CBD CAK Y01 sing 477 n n 
CAK CAI Y01 sing 478 n n 
CAI CAZ Y01 doub 479 n n 
CAZ CAV Y01 sing 480 n n 
CAZ CBH Y01 sing 481 n n 
CAV CBC Y01 sing 482 n n 
CBH CAD Y01 sing 483 n n 
CBH CAT Y01 sing 484 n n 
CAT CAR Y01 sing 485 n n 
CAR CBC Y01 sing 486 n n 
CBC OAW Y01 sing 487 n n 
OAW CAY Y01 sing 488 n n 
CAY OAG Y01 doub 489 n n 
CAY CAM Y01 sing 490 n n 
CAM CAL Y01 sing 491 n n 
CAL CAX Y01 sing 492 n n 
CAX OAH Y01 sing 493 n n 
CAX OAF Y01 doub 494 n n 
CAA HAA1 Y01 sing 495 n n 
CAA HAA2 Y01 sing 496 n n 
CAA HAA3 Y01 sing 497 n n 
CBA HBA Y01 sing 498 n n 
CAB HAB1 Y01 sing 499 n n 
CAB HAB2 Y01 sing 500 n n 
CAB HAB3 Y01 sing 501 n n 
CAN HAN1 Y01 sing 502 n n 
CAN HAN2 Y01 sing 503 n n 
CAJ HAJ1 Y01 sing 504 n n 
CAJ HAJ2 Y01 sing 505 n n 
CAO HAO1 Y01 sing 506 n n 
CAO HAO2 Y01 sing 507 n n 
CBB HBB Y01 sing 508 n n 
CAC HAC1 Y01 sing 509 n n 
CAC HAC2 Y01 sing 510 n n 
CAC HAC3 Y01 sing 511 n n 
CBE HBE Y01 sing 512 n n 
CAP HAP1 Y01 sing 513 n n 
CAP HAP2 Y01 sing 514 n n 
CAQ HAQ1 Y01 sing 515 n n 
CAQ HAQ2 Y01 sing 516 n n 
CBG HBG Y01 sing 517 n n 
CBD HBD Y01 sing 518 n n 
CAE HAE1 Y01 sing 519 n n 
CAE HAE2 Y01 sing 520 n n 
CAE HAE3 Y01 sing 521 n n 
CAU HAU1 Y01 sing 522 n n 
CAU HAU2 Y01 sing 523 n n 
CAS HAS1 Y01 sing 524 n n 
CAS HAS2 Y01 sing 525 n n 
CBF HBF Y01 sing 526 n n 
CAK HAK1 Y01 sing 527 n n 
CAK HAK2 Y01 sing 528 n n 
CAI HAI Y01 sing 529 n n 
CAV HAV1 Y01 sing 530 n n 
CAV HAV2 Y01 sing 531 n n 
CBC HBC Y01 sing 532 n n 
CAD HAD1 Y01 sing 533 n n 
CAD HAD2 Y01 sing 534 n n 
CAD HAD3 Y01 sing 535 n n 
CAT HAT1 Y01 sing 536 n n 
CAT HAT2 Y01 sing 537 n n 
CAR HAR1 Y01 sing 538 n n 
CAR HAR2 Y01 sing 539 n n 
CAM HAM1 Y01 sing 540 n n 
CAM HAM2 Y01 sing 541 n n 
CAL HAL1 Y01 sing 542 n n 
CAL HAL2 Y01 sing 543 n n 
OAH HAH Y01 sing 544 n n 
#
_atom_sites.entry_id                     7TYY 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
H 8 NAG R 1 501 609 NAG NAG . 
I 9 PLM R 1 502 1 PLM PLM . 
J 10 Y01 R 1 503 2 Y01 Y01 . 
K 10 Y01 R 1 504 3 Y01 Y01 . 
L 9 PLM R 1 505 4 PLM PLM . 
M 9 PLM R 1 506 5 PLM PLM . 
N 9 PLM R 1 507 6 PLM PLM . 
O 9 PLM R 1 508 7 PLM PLM . 
P 11 HOH P 1 101 5 HOH HOH . 
P 11 HOH P 2 102 1 HOH HOH . 
Q 11 HOH R 1 601 13 HOH HOH . 
Q 11 HOH R 2 602 3 HOH HOH . 
Q 11 HOH R 3 603 8 HOH HOH . 
Q 11 HOH R 4 604 11 HOH HOH . 
R 11 HOH A 1 401 12 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAA Y01 . . . J 10 116.065 104.286 97.803 1 46.75 ? CAA Y01 503 R 1 
HETATM 2 C CBA Y01 . . . J 10 116.172 103.093 98.736 1 46.75 ? CBA Y01 503 R 1 
HETATM 3 C CAB Y01 . . . J 10 117.568 102.496 98.681 1 46.75 ? CAB Y01 503 R 1 
HETATM 4 C CAN Y01 . . . J 10 115.791 103.474 100.16 1 46.75 ? CAN Y01 503 R 1 
HETATM 5 C CAJ Y01 . . . J 10 114.359 103.885 100.363 1 46.75 ? CAJ Y01 503 R 1 
HETATM 6 C CAO Y01 . . . J 10 114.094 104.358 101.763 1 46.75 ? CAO Y01 503 R 1 
HETATM 7 C CBB Y01 . . . J 10 112.664 104.144 102.274 1 46.75 ? CBB Y01 503 R 1 
HETATM 8 C CAC Y01 . . . J 10 112.035 102.941 101.579 1 46.75 ? CAC Y01 503 R 1 
HETATM 9 C CBE Y01 . . . J 10 112.706 103.977 103.801 1 46.75 ? CBE Y01 503 R 1 
HETATM 10 C CAP Y01 . . . J 10 114.151 104.181 104.334 1 46.75 ? CAP Y01 503 R 1 
HETATM 11 C CAQ Y01 . . . J 10 114.061 105.264 105.416 1 46.75 ? CAQ Y01 503 R 1 
HETATM 12 C CBG Y01 . . . J 10 112.668 105.004 105.965 1 46.75 ? CBG Y01 503 R 1 
HETATM 13 C CBI Y01 . . . J 10 111.804 104.881 104.696 1 46.75 ? CBI Y01 503 R 1 
HETATM 14 C CAE Y01 . . . J 10 111.58 106.229 104.001 1 46.75 ? CAE Y01 503 R 1 
HETATM 15 C CAU Y01 . . . J 10 110.465 104.305 105.159 1 46.75 ? CAU Y01 503 R 1 
HETATM 16 C CAS Y01 . . . J 10 109.82 105.212 106.214 1 46.75 ? CAS Y01 503 R 1 
HETATM 17 C CBF Y01 . . . J 10 110.712 105.424 107.447 1 46.75 ? CBF Y01 503 R 1 
HETATM 18 C CBD Y01 . . . J 10 112.115 105.914 107.049 1 46.75 ? CBD Y01 503 R 1 
HETATM 19 C CAK Y01 . . . J 10 113.038 105.88 108.261 1 46.75 ? CAK Y01 503 R 1 
HETATM 20 C CAI Y01 . . . J 10 112.354 106.278 109.528 1 46.75 ? CAI Y01 503 R 1 
HETATM 21 C CAZ Y01 . . . J 10 111.072 106.582 109.637 1 46.75 ? CAZ Y01 503 R 1 
HETATM 22 C CAV Y01 . . . J 10 110.527 107.136 110.933 1 46.75 ? CAV Y01 503 R 1 
HETATM 23 C CBH Y01 . . . J 10 110.054 106.319 108.533 1 46.75 ? CBH Y01 503 R 1 
HETATM 24 C CAD Y01 . . . J 10 109.586 107.668 107.96 1 46.75 ? CAD Y01 503 R 1 
HETATM 25 C CAT Y01 . . . J 10 108.845 105.569 109.143 1 46.75 ? CAT Y01 503 R 1 
HETATM 26 C CAR Y01 . . . J 10 108.349 106.128 110.48 1 46.75 ? CAR Y01 503 R 1 
HETATM 27 C CBC Y01 . . . J 10 109.475 106.204 111.474 1 46.75 ? CBC Y01 503 R 1 
HETATM 28 O OAW Y01 . . . J 10 109.023 106.725 112.76 1 46.75 ? OAW Y01 503 R 1 
HETATM 29 C CAY Y01 . . . J 10 109.873 106.677 113.784 1 46.75 ? CAY Y01 503 R 1 
HETATM 30 O OAG Y01 . . . J 10 110.804 105.927 113.842 1 46.75 ? OAG Y01 503 R 1 
HETATM 31 C CAM Y01 . . . J 10 109.516 107.661 114.864 1 46.75 ? CAM Y01 503 R 1 
HETATM 32 C CAL Y01 . . . J 10 109.384 107.095 116.268 1 46.75 ? CAL Y01 503 R 1 
HETATM 33 C CAX Y01 . . . J 10 110.682 107.015 117.055 1 46.75 ? CAX Y01 503 R 1 
HETATM 34 O OAH Y01 . . . J 10 110.65 106.507 118.193 1 46.75 ? OAH Y01 503 R 1 
HETATM 35 O OAF Y01 . . . J 10 111.718 107.474 116.535 1 46.75 ? OAF Y01 503 R 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    22 
_model_server_stats.query_time_ms           223 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           35 
#