data_7TZ7 # _model_server_result.job_id tT8oob-2HhNCLTIpbWE_Ow _model_server_result.datetime_utc '2025-03-04 16:32:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7tz7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1101}' # _entry.id 7TZ7 # _exptl.entry_id 7TZ7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 455.391 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "(4S,5R)-3-[2'-amino-2-(morpholin-4-yl)-4'-(trifluoromethyl)[4,5'-bipyrimidin]-6-yl]-4-(hydroxymethyl)-5-methyl-1,3-oxazolidin-2-one" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7TZ7 _cell.length_a 99.87 _cell.length_b 109.672 _cell.length_c 135.242 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7TZ7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C18 H20 F3 N7 O4' _chem_comp.formula_weight 455.391 _chem_comp.id KVJ _chem_comp.mon_nstd_flag . _chem_comp.name "(4S,5R)-3-[2'-amino-2-(morpholin-4-yl)-4'-(trifluoromethyl)[4,5'-bipyrimidin]-6-yl]-4-(hydroxymethyl)-5-methyl-1,3-oxazolidin-2-one" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N5 C15 KVJ sing 173 n n F C17 KVJ sing 174 n n N6 C15 KVJ doub 175 n y N6 C16 KVJ sing 176 n y C15 N4 KVJ sing 177 n y C17 F2 KVJ sing 178 n n C17 C16 KVJ sing 179 n n C17 F1 KVJ sing 180 n n C16 C13 KVJ doub 181 n y N4 C14 KVJ doub 182 n y C14 C13 KVJ sing 183 n y C13 C7 KVJ sing 184 n n O1 C2 KVJ doub 185 n n C7 C6 KVJ doub 186 n y C7 N1 KVJ sing 187 n y C6 C5 KVJ sing 188 n y C2 O KVJ sing 189 n n C2 N KVJ sing 190 n n N1 C8 KVJ doub 191 n y O C1 KVJ sing 192 n n C5 N KVJ sing 193 n n C5 N2 KVJ doub 194 n y N C3 KVJ sing 195 n n C8 N2 KVJ sing 196 n y C8 N3 KVJ sing 197 n n C1 C3 KVJ sing 198 n n C1 C KVJ sing 199 n n C3 C4 KVJ sing 200 n n C12 N3 KVJ sing 201 n n C12 C11 KVJ sing 202 n n N3 C9 KVJ sing 203 n n C4 O2 KVJ sing 204 n n C11 O3 KVJ sing 205 n n C9 C10 KVJ sing 206 n n O3 C10 KVJ sing 207 n n C1 H1 KVJ sing 208 n n C3 H2 KVJ sing 209 n n O2 H3 KVJ sing 210 n n C11 H4 KVJ sing 211 n n C11 H5 KVJ sing 212 n n C12 H6 KVJ sing 213 n n C12 H7 KVJ sing 214 n n C14 H8 KVJ sing 215 n n C H9 KVJ sing 216 n n C H10 KVJ sing 217 n n C H11 KVJ sing 218 n n C10 H12 KVJ sing 219 n n C10 H13 KVJ sing 220 n n C4 H14 KVJ sing 221 n n C4 H15 KVJ sing 222 n n C6 H16 KVJ sing 223 n n C9 H17 KVJ sing 224 n n C9 H18 KVJ sing 225 n n N5 H19 KVJ sing 226 n n N5 H20 KVJ sing 227 n n # _atom_sites.entry_id 7TZ7 _atom_sites.fract_transf_matrix[1][1] 0.010013 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009118 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007394 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 KVJ A 1 1101 1101 KVJ LI1 . D 4 HOH A 1 1201 47 HOH HOH . D 4 HOH A 2 1202 36 HOH HOH . D 4 HOH A 3 1203 34 HOH HOH . D 4 HOH A 4 1204 12 HOH HOH . D 4 HOH A 5 1205 50 HOH HOH . D 4 HOH A 6 1206 44 HOH HOH . D 4 HOH A 7 1207 38 HOH HOH . D 4 HOH A 8 1208 46 HOH HOH . D 4 HOH A 9 1209 37 HOH HOH . D 4 HOH A 10 1210 52 HOH HOH . D 4 HOH A 11 1211 51 HOH HOH . D 4 HOH A 12 1212 35 HOH HOH . D 4 HOH A 13 1213 22 HOH HOH . D 4 HOH A 14 1214 27 HOH HOH . D 4 HOH A 15 1215 25 HOH HOH . D 4 HOH A 16 1216 17 HOH HOH . D 4 HOH A 17 1217 16 HOH HOH . D 4 HOH A 18 1218 49 HOH HOH . D 4 HOH A 19 1219 10 HOH HOH . D 4 HOH A 20 1220 6 HOH HOH . D 4 HOH A 21 1221 15 HOH HOH . D 4 HOH A 22 1222 14 HOH HOH . D 4 HOH A 23 1223 48 HOH HOH . D 4 HOH A 24 1224 19 HOH HOH . D 4 HOH A 25 1225 2 HOH HOH . D 4 HOH A 26 1226 40 HOH HOH . E 4 HOH B 1 601 43 HOH HOH . E 4 HOH B 2 602 7 HOH HOH . E 4 HOH B 3 603 39 HOH HOH . E 4 HOH B 4 604 8 HOH HOH . E 4 HOH B 5 605 3 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 KVJ . . . C 3 0.23 5.665 -17.615 1 90.51 ? C1 KVJ 1101 A 1 HETATM 2 C C2 KVJ . . . C 3 -0.325 6.595 -19.68 1 74.78 ? C2 KVJ 1101 A 1 HETATM 3 C C3 KVJ . . . C 3 -0.626 6.911 -17.351 1 83.81 ? C3 KVJ 1101 A 1 HETATM 4 O O1 KVJ . . . C 3 -0.36 6.713 -20.877 1 80.32 ? O1 KVJ 1101 A 1 HETATM 5 O O2 KVJ . . . C 3 -1.662 6.492 -15.191 1 100.95 ? O2 KVJ 1101 A 1 HETATM 6 O O3 KVJ . . . C 3 -3.427 12.775 -14.732 1 73.82 ? O3 KVJ 1101 A 1 HETATM 7 C C11 KVJ . . . C 3 -4.105 12.966 -15.969 1 72.26 ? C11 KVJ 1101 A 1 HETATM 8 C C12 KVJ . . . C 3 -3.216 12.649 -17.145 1 69.49 ? C12 KVJ 1101 A 1 HETATM 9 C C13 KVJ . . . C 3 -3.318 10.623 -21.642 1 72.24 ? C13 KVJ 1101 A 1 HETATM 10 C C14 KVJ . . . C 3 -4.613 11.11 -21.65 1 69.15 ? C14 KVJ 1101 A 1 HETATM 11 C C15 KVJ . . . C 3 -4.52 11.502 -23.887 1 72.42 ? C15 KVJ 1101 A 1 HETATM 12 C C16 KVJ . . . C 3 -2.656 10.621 -22.886 1 74.29 ? C16 KVJ 1101 A 1 HETATM 13 C C17 KVJ . . . C 3 -1.23 10.167 -23.109 1 78.75 ? C17 KVJ 1101 A 1 HETATM 14 N N KVJ . . . C 3 -0.878 7.399 -18.722 1 77.78 ? N KVJ 1101 A 1 HETATM 15 C C KVJ . . . C 3 -0.314 4.361 -17.083 1 82.49 ? C KVJ 1101 A 1 HETATM 16 O O KVJ . . . C 3 0.323 5.57 -19.072 1 86.17 ? O KVJ 1101 A 1 HETATM 17 C C10 KVJ . . . C 3 -3 11.421 -14.62 1 63.48 ? C10 KVJ 1101 A 1 HETATM 18 C C4 KVJ . . . C 3 -1.909 6.614 -16.585 1 87.02 ? C4 KVJ 1101 A 1 HETATM 19 C C5 KVJ . . . C 3 -1.6 8.59 -18.979 1 73.99 ? C5 KVJ 1101 A 1 HETATM 20 C C6 KVJ . . . C 3 -2.074 8.932 -20.241 1 66.38 ? C6 KVJ 1101 A 1 HETATM 21 C C7 KVJ . . . C 3 -2.737 10.146 -20.353 1 66.1 ? C7 KVJ 1101 A 1 HETATM 22 C C8 KVJ . . . C 3 -2.449 10.515 -18.116 1 67.56 ? C8 KVJ 1101 A 1 HETATM 23 C C9 KVJ . . . C 3 -2.064 11.041 -15.738 1 70.52 ? C9 KVJ 1101 A 1 HETATM 24 F F KVJ . . . C 3 -0.763 10.546 -24.295 1 79.28 ? F KVJ 1101 A 1 HETATM 25 F F1 KVJ . . . C 3 -0.393 10.663 -22.199 1 76.81 ? F1 KVJ 1101 A 1 HETATM 26 F F2 KVJ . . . C 3 -1.111 8.841 -23.071 1 76.22 ? F2 KVJ 1101 A 1 HETATM 27 N N1 KVJ . . . C 3 -2.93 10.952 -19.297 1 62.48 ? N1 KVJ 1101 A 1 HETATM 28 N N2 KVJ . . . C 3 -1.775 9.368 -17.906 1 69.78 ? N2 KVJ 1101 A 1 HETATM 29 N N3 KVJ . . . C 3 -2.711 11.279 -17.029 1 66.43 ? N3 KVJ 1101 A 1 HETATM 30 N N4 KVJ . . . C 3 -5.238 11.556 -22.743 1 75.05 ? N4 KVJ 1101 A 1 HETATM 31 N N5 KVJ . . . C 3 -5.118 11.921 -25.005 1 78.09 ? N5 KVJ 1101 A 1 HETATM 32 N N6 KVJ . . . C 3 -3.249 11.052 -24.004 1 72.3 ? N6 KVJ 1101 A 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 248 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 32 #