data_7TZF # _model_server_result.job_id mfj1k3lCZ4jdLkmJj3yXRA _model_server_result.datetime_utc '2024-10-15 14:32:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7tzf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":503}' # _entry.id 7TZF # _exptl.entry_id 7TZF _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 221.208 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7TZF _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7TZF _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details heptameric _pdbx_struct_assembly.oligomeric_count 7 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 8 H N N ? 8 J N N ? 8 K N N ? 8 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 41 E CYS 40 1_555 A SG CYS 73 E CYS 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 A SG CYS 58 E CYS 57 1_555 A SG CYS 105 E CYS 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf3 B SG CYS 2 P CYS 2 1_555 B SG CYS 7 P CYS 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 C SG CYS 63 R CYS 55 1_555 C SG CYS 89 R CYS 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf5 C SG CYS 80 R CYS 72 1_555 C SG CYS 120 R CYS 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf6 C SG CYS 103 R CYS 95 1_555 C SG CYS 142 R CYS 134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf7 C SG CYS 227 R CYS 219 1_555 C SG CYS 297 R CYS 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf8 G SG CYS 22 N CYS 22 1_555 G SG CYS 96 N CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf9 G SG CYS 99 N CYS 99 1_555 G SG CYS 107 N CYS 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? covale ? covale1 A ND2 ASN 72 E ASN 71 1_555 H C1 NAG . E NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale2 B C TYR 37 P TYR 37 1_555 B N NH2 38 P NH2 38 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale3 C ND2 ASN 81 R ASN 73 1_555 K C1 NAG . R NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale4 C ND2 ASN 133 R ASN 125 1_555 L C1 NAG . R NAG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale5 C ND2 ASN 138 R ASN 130 1_555 J C1 NAG . R NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 7TZF _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code H 8 NAG E 1 201 144 NAG NAG . I 9 P42 P 1 101 17 P42 P42 . J 8 NAG R 1 501 410 NAG NAG . K 8 NAG R 1 502 412 NAG NAG . L 8 NAG R 1 503 413 NAG NAG . M 10 PLM R 1 504 1 PLM PLM . N 10 PLM R 1 505 2 PLM PLM . O 11 Y01 R 1 506 3 Y01 Y01 . P 11 Y01 R 1 507 4 Y01 Y01 . Q 10 PLM R 1 508 5 PLM PLM . R 10 PLM R 1 509 6 PLM PLM . S 10 PLM R 1 510 9 PLM PLM . T 10 PLM R 1 511 11 PLM PLM . U 10 PLM R 1 512 12 PLM PLM . V 10 PLM R 1 513 13 PLM PLM . W 10 PLM R 1 514 14 PLM PLM . X 10 PLM R 1 515 15 PLM PLM . Y 10 PLM R 1 516 16 PLM PLM . Z 12 HOH P 1 201 20 HOH HOH . Z 12 HOH P 2 202 31 HOH HOH . Z 12 HOH P 3 203 17 HOH HOH . Z 12 HOH P 4 204 40 HOH HOH . Z 12 HOH P 5 205 32 HOH HOH . Z 12 HOH P 6 206 16 HOH HOH . AA 12 HOH R 1 601 1 HOH HOH . AA 12 HOH R 2 602 35 HOH HOH . AA 12 HOH R 3 603 36 HOH HOH . AA 12 HOH R 4 604 9 HOH HOH . AA 12 HOH R 5 605 13 HOH HOH . AA 12 HOH R 6 606 7 HOH HOH . AA 12 HOH R 7 607 38 HOH HOH . AA 12 HOH R 8 608 11 HOH HOH . AA 12 HOH R 9 609 15 HOH HOH . AA 12 HOH R 10 610 8 HOH HOH . AA 12 HOH R 11 611 24 HOH HOH . AA 12 HOH R 12 612 27 HOH HOH . AA 12 HOH R 13 613 28 HOH HOH . AA 12 HOH R 14 614 6 HOH HOH . AA 12 HOH R 15 615 21 HOH HOH . AA 12 HOH R 16 616 19 HOH HOH . AA 12 HOH R 17 617 23 HOH HOH . AA 12 HOH R 18 618 39 HOH HOH . BA 12 HOH A 1 401 37 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . L 8 85.082 105.766 54.614 1 109.51 ? C1 NAG 503 R 1 HETATM 2 C C2 NAG . . . L 8 83.687 105.165 54.446 1 109.51 ? C2 NAG 503 R 1 HETATM 3 C C3 NAG . . . L 8 83.78 103.648 54.313 1 109.51 ? C3 NAG 503 R 1 HETATM 4 C C4 NAG . . . L 8 84.744 103.27 53.197 1 109.51 ? C4 NAG 503 R 1 HETATM 5 C C5 NAG . . . L 8 86.094 103.948 53.412 1 109.51 ? C5 NAG 503 R 1 HETATM 6 C C6 NAG . . . L 8 87.064 103.711 52.278 1 109.51 ? C6 NAG 503 R 1 HETATM 7 C C7 NAG . . . L 8 82.05 106.618 55.561 1 109.51 ? C7 NAG 503 R 1 HETATM 8 C C8 NAG . . . L 8 81.227 106.836 56.794 1 109.51 ? C8 NAG 503 R 1 HETATM 9 N N2 NAG . . . L 8 82.825 105.528 55.559 1 109.51 ? N2 NAG 503 R 1 HETATM 10 O O3 NAG . . . L 8 82.489 103.113 54.045 1 109.51 ? O3 NAG 503 R 1 HETATM 11 O O4 NAG . . . L 8 84.927 101.859 53.169 1 109.51 ? O4 NAG 503 R 1 HETATM 12 O O5 NAG . . . L 8 85.915 105.369 53.515 1 109.51 ? O5 NAG 503 R 1 HETATM 13 O O6 NAG . . . L 8 87.59 102.392 52.312 1 109.51 ? O6 NAG 503 R 1 HETATM 14 O O7 NAG . . . L 8 82.017 107.393 54.611 1 109.51 ? O7 NAG 503 R 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 14 #