data_7TZJ # _model_server_result.job_id Ub61LS6OlKVtSkxHQL4I5A _model_server_result.datetime_utc '2025-07-19 14:19:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7tzj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":401}' # _entry.id 7TZJ # _exptl.entry_id 7TZJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 390.493 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[(3-fluorophenyl)methyl]-1-[(1R)-1-naphthalen-1-ylethyl]piperidine-4-carboxamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7TZJ _cell.length_a 72.951 _cell.length_b 90.632 _cell.length_c 99.766 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7TZJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall 'P 2 2ab' _symmetry.space_group_name_H-M 'P 21 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,P 1 1 B,I,J,K,L,M,N,O,Q 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 18 A ASN 15 1_555 L ZN ZN . B ZN 404 3_455 ? ? ? ? ? ? ? ? ? ? ? ? 1.956 ? metalc ? metalc2 A NE2 HIS 20 A HIS 17 1_555 G ZN ZN . A ZN 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? metalc ? metalc3 A NE2 HIS 50 A HIS 47 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? metalc ? metalc4 A OE2 GLU 70 A GLU 67 1_555 G ZN ZN . A ZN 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.99 ? metalc ? metalc5 A NE2 HIS 76 A HIS 73 1_555 F ZN ZN . A ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.153 ? metalc ? metalc6 A ND1 HIS 92 A HIS 89 1_555 E ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? metalc ? metalc7 F ZN ZN . A ZN 404 1_555 P O HOH . A HOH 517 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.439 ? metalc ? metalc8 G ZN ZN . A ZN 405 1_555 P O HOH . A HOH 511 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.611 ? metalc ? metalc9 G ZN ZN . A ZN 405 3_445 B OD1 ASN 18 B ASN 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.829 ? metalc ? metalc10 B NE2 HIS 20 B HIS 17 1_555 L ZN ZN . B ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? metalc ? metalc11 B NE2 HIS 50 B HIS 47 1_555 M ZN ZN . B ZN 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.195 ? metalc ? metalc12 B OE2 GLU 70 B GLU 67 1_555 L ZN ZN . B ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.941 ? metalc ? metalc13 B NE2 HIS 76 B HIS 73 1_555 N ZN ZN . B ZN 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? metalc ? metalc14 B ND1 HIS 92 B HIS 89 1_555 J ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? metalc ? metalc15 B NE2 HIS 258 B HIS 255 1_555 K ZN ZN . B ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? metalc ? metalc16 M ZN ZN . B ZN 405 1_555 Q O HOH . B HOH 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.449 ? metalc ? metalc17 M ZN ZN . B ZN 405 1_555 Q O HOH . B HOH 511 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? # _chem_comp.formula 'C25 H27 F N2 O' _chem_comp.formula_weight 390.493 _chem_comp.id S88 _chem_comp.mon_nstd_flag . _chem_comp.name N-[(3-fluorophenyl)methyl]-1-[(1R)-1-naphthalen-1-ylethyl]piperidine-4-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C5 C6 S88 doub 286 n y C5 C4 S88 sing 287 n y C6 C1 S88 sing 288 n y C4 C3 S88 doub 289 n y C1 C2 S88 doub 290 n y C3 C2 S88 sing 291 n y C3 C7 S88 sing 292 n y C2 C10 S88 sing 293 n y C7 C8 S88 doub 294 n y C10 C11 S88 sing 295 n n C10 C9 S88 doub 296 n y C11 C12 S88 sing 297 n n C11 N13 S88 sing 298 n n C8 C9 S88 sing 299 n y N13 C14 S88 sing 300 n n N13 C18 S88 sing 301 n n C14 C15 S88 sing 302 n n C18 C17 S88 sing 303 n n C16 C17 S88 sing 304 n n C16 C15 S88 sing 305 n n C16 C19 S88 sing 306 n n N21 C19 S88 sing 307 n n N21 C22 S88 sing 308 n n C19 O20 S88 doub 309 n n F29 C27 S88 sing 310 n n C27 C28 S88 doub 311 n y C27 C26 S88 sing 312 n y C28 C23 S88 sing 313 n y C26 C25 S88 doub 314 n y C23 C22 S88 sing 315 n n C23 C24 S88 doub 316 n y C25 C24 S88 sing 317 n y C26 H1 S88 sing 318 n n C25 H2 S88 sing 319 n n C24 H3 S88 sing 320 n n C28 H4 S88 sing 321 n n C22 H5 S88 sing 322 n n C22 H6 S88 sing 323 n n N21 H7 S88 sing 324 n n C16 H8 S88 sing 325 n n C15 H9 S88 sing 326 n n C15 H10 S88 sing 327 n n C14 H11 S88 sing 328 n n C14 H12 S88 sing 329 n n C18 H14 S88 sing 330 n n C18 H15 S88 sing 331 n n C17 H16 S88 sing 332 n n C17 H17 S88 sing 333 n n C11 H18 S88 sing 334 n n C12 H19 S88 sing 335 n n C12 H20 S88 sing 336 n n C12 H21 S88 sing 337 n n C1 H22 S88 sing 338 n n C6 H23 S88 sing 339 n n C5 H24 S88 sing 340 n n C4 H25 S88 sing 341 n n C7 H26 S88 sing 342 n n C8 H27 S88 sing 343 n n C9 H28 S88 sing 344 n n # _atom_sites.entry_id 7TZJ _atom_sites.fract_transf_matrix[1][1] 0.013708 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011034 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010023 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 S88 A 1 401 401 S88 3K . D 3 ZN A 1 402 402 ZN ZN . E 3 ZN A 1 403 403 ZN ZN . F 3 ZN A 1 404 404 ZN ZN . G 3 ZN A 1 405 405 ZN ZN . H 4 DMS A 1 406 406 DMS DMS . I 2 S88 B 1 401 401 S88 3K . J 3 ZN B 1 402 402 ZN ZN . K 3 ZN B 1 403 403 ZN ZN . L 3 ZN B 1 404 404 ZN ZN . M 3 ZN B 1 405 405 ZN ZN . N 3 ZN B 1 406 406 ZN ZN . O 4 DMS B 1 407 407 DMS DMS . P 5 HOH A 1 501 11 HOH HOH . P 5 HOH A 2 502 29 HOH HOH . P 5 HOH A 3 503 20 HOH HOH . P 5 HOH A 4 504 18 HOH HOH . P 5 HOH A 5 505 22 HOH HOH . P 5 HOH A 6 506 1 HOH HOH . P 5 HOH A 7 507 25 HOH HOH . P 5 HOH A 8 508 19 HOH HOH . P 5 HOH A 9 509 31 HOH HOH . P 5 HOH A 10 510 9 HOH HOH . P 5 HOH A 11 511 26 HOH HOH . P 5 HOH A 12 512 5 HOH HOH . P 5 HOH A 13 513 21 HOH HOH . P 5 HOH A 14 514 8 HOH HOH . P 5 HOH A 15 515 4 HOH HOH . P 5 HOH A 16 516 10 HOH HOH . P 5 HOH A 17 517 30 HOH HOH . Q 5 HOH B 1 501 14 HOH HOH . Q 5 HOH B 2 502 6 HOH HOH . Q 5 HOH B 3 503 24 HOH HOH . Q 5 HOH B 4 504 12 HOH HOH . Q 5 HOH B 5 505 16 HOH HOH . Q 5 HOH B 6 506 28 HOH HOH . Q 5 HOH B 7 507 17 HOH HOH . Q 5 HOH B 8 508 13 HOH HOH . Q 5 HOH B 9 509 27 HOH HOH . Q 5 HOH B 10 510 15 HOH HOH . Q 5 HOH B 11 511 2 HOH HOH . Q 5 HOH B 12 512 23 HOH HOH . Q 5 HOH B 13 513 7 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 F F29 S88 . . . I 2 -28.484 -46.364 -41.358 1 72.03 ? F29 S88 401 B 1 HETATM 2 C C27 S88 . . . I 2 -27.76 -45.265 -41.021 1 63.21 ? C27 S88 401 B 1 HETATM 3 C C26 S88 . . . I 2 -26.461 -45.185 -41.439 1 66.38 ? C26 S88 401 B 1 HETATM 4 C C25 S88 . . . I 2 -25.746 -44.051 -41.1 1 71.69 ? C25 S88 401 B 1 HETATM 5 C C24 S88 . . . I 2 -26.337 -43.041 -40.358 1 72.2 ? C24 S88 401 B 1 HETATM 6 C C28 S88 . . . I 2 -28.379 -44.285 -40.283 1 70.13 ? C28 S88 401 B 1 HETATM 7 C C23 S88 . . . I 2 -27.654 -43.152 -39.934 1 70.68 ? C23 S88 401 B 1 HETATM 8 C C22 S88 . . . I 2 -28.269 -42.082 -39.065 1 65.74 ? C22 S88 401 B 1 HETATM 9 N N21 S88 . . . I 2 -29.416 -41.425 -39.678 1 61.78 ? N21 S88 401 B 1 HETATM 10 C C19 S88 . . . I 2 -30.463 -40.993 -38.968 1 65.61 ? C19 S88 401 B 1 HETATM 11 O O20 S88 . . . I 2 -30.459 -40.964 -37.739 1 70.71 ? O20 S88 401 B 1 HETATM 12 C C16 S88 . . . I 2 -31.65 -40.509 -39.772 1 57.24 ? C16 S88 401 B 1 HETATM 13 C C15 S88 . . . I 2 -32.305 -39.32 -39.073 1 59.4 ? C15 S88 401 B 1 HETATM 14 C C14 S88 . . . I 2 -33.497 -38.824 -39.886 1 66.34 ? C14 S88 401 B 1 HETATM 15 N N13 S88 . . . I 2 -34.464 -39.899 -40.218 1 76.61 ? N13 S88 401 B 1 HETATM 16 C C18 S88 . . . I 2 -33.835 -41.085 -40.808 1 71.02 ? C18 S88 401 B 1 HETATM 17 C C17 S88 . . . I 2 -32.694 -41.609 -39.964 1 65.11 ? C17 S88 401 B 1 HETATM 18 C C11 S88 . . . I 2 -35.564 -39.469 -41.111 1 67.43 ? C11 S88 401 B 1 HETATM 19 C C12 S88 . . . I 2 -36.215 -38.224 -40.542 1 59.9 ? C12 S88 401 B 1 HETATM 20 C C10 S88 . . . I 2 -36.583 -40.522 -41.525 1 60.57 ? C10 S88 401 B 1 HETATM 21 C C2 S88 . . . I 2 -36.462 -41.143 -42.799 1 66.74 ? C2 S88 401 B 1 HETATM 22 C C1 S88 . . . I 2 -35.453 -40.797 -43.739 1 62.36 ? C1 S88 401 B 1 HETATM 23 C C6 S88 . . . I 2 -35.348 -41.429 -44.934 1 58.39 ? C6 S88 401 B 1 HETATM 24 C C5 S88 . . . I 2 -36.229 -42.434 -45.274 1 57.04 ? C5 S88 401 B 1 HETATM 25 C C4 S88 . . . I 2 -37.229 -42.806 -44.416 1 60.45 ? C4 S88 401 B 1 HETATM 26 C C3 S88 . . . I 2 -37.376 -42.173 -43.161 1 64.73 ? C3 S88 401 B 1 HETATM 27 C C7 S88 . . . I 2 -38.395 -42.533 -42.24 1 61.36 ? C7 S88 401 B 1 HETATM 28 C C8 S88 . . . I 2 -38.497 -41.899 -41.038 1 66.29 ? C8 S88 401 B 1 HETATM 29 C C9 S88 . . . I 2 -37.601 -40.902 -40.685 1 65.52 ? C9 S88 401 B 1 HETATM 30 H H1 S88 . . . I 2 -26 -45.984 -42.018 1 79.66 ? H1 S88 401 B 1 HETATM 31 H H2 S88 . . . I 2 -24.71 -43.953 -41.422 1 86.03 ? H2 S88 401 B 1 HETATM 32 H H3 S88 . . . I 2 -25.754 -42.156 -40.108 1 86.64 ? H3 S88 401 B 1 HETATM 33 H H4 S88 . . . I 2 -29.418 -44.398 -39.978 1 84.16 ? H4 S88 401 B 1 HETATM 34 H H5 S88 . . . I 2 -28.537 -42.543 -38.116 1 78.88 ? H5 S88 401 B 1 HETATM 35 H H6 S88 . . . I 2 -27.486 -41.366 -38.821 1 78.88 ? H6 S88 401 B 1 HETATM 36 H H7 S88 . . . I 2 -29.374 -41.312 -40.685 1 74.13 ? H7 S88 401 B 1 HETATM 37 H H8 S88 . . . I 2 -31.335 -40.185 -40.762 1 68.68 ? H8 S88 401 B 1 HETATM 38 H H9 S88 . . . I 2 -32.604 -39.604 -38.065 1 71.28 ? H9 S88 401 B 1 HETATM 39 H H10 S88 . . . I 2 -31.571 -38.53 -38.924 1 71.28 ? H10 S88 401 B 1 HETATM 40 H H11 S88 . . . I 2 -33.955 -38.02 -39.312 1 79.61 ? H11 S88 401 B 1 HETATM 41 H H12 S88 . . . I 2 -33.091 -38.346 -40.777 1 79.61 ? H12 S88 401 B 1 HETATM 42 H H14 S88 . . . I 2 -34.555 -41.889 -40.957 1 85.22 ? H14 S88 401 B 1 HETATM 43 H H15 S88 . . . I 2 -33.462 -40.884 -41.811 1 85.22 ? H15 S88 401 B 1 HETATM 44 H H16 S88 . . . I 2 -33.077 -41.963 -39.008 1 78.13 ? H16 S88 401 B 1 HETATM 45 H H17 S88 . . . I 2 -32.26 -42.488 -40.439 1 78.13 ? H17 S88 401 B 1 HETATM 46 H H18 S88 . . . I 2 -35.096 -39.282 -42.076 1 80.92 ? H18 S88 401 B 1 HETATM 47 H H19 S88 . . . I 2 -37.145 -38.008 -41.064 1 71.88 ? H19 S88 401 B 1 HETATM 48 H H20 S88 . . . I 2 -36.437 -38.36 -39.484 1 71.88 ? H20 S88 401 B 1 HETATM 49 H H21 S88 . . . I 2 -35.553 -37.366 -40.647 1 71.88 ? H21 S88 401 B 1 HETATM 50 H H22 S88 . . . I 2 -34.738 -40.008 -43.51 1 74.84 ? H22 S88 401 B 1 HETATM 51 H H23 S88 . . . I 2 -34.565 -41.146 -45.636 1 70.07 ? H23 S88 401 B 1 HETATM 52 H H24 S88 . . . I 2 -36.125 -42.934 -46.235 1 68.45 ? H24 S88 401 B 1 HETATM 53 H H25 S88 . . . I 2 -37.925 -43.596 -44.691 1 72.54 ? H25 S88 401 B 1 HETATM 54 H H26 S88 . . . I 2 -39.094 -43.323 -42.509 1 73.63 ? H26 S88 401 B 1 HETATM 55 H H27 S88 . . . I 2 -39.288 -42.173 -40.342 1 79.54 ? H27 S88 401 B 1 HETATM 56 H H28 S88 . . . I 2 -37.722 -40.421 -39.716 1 78.62 ? H28 S88 401 B 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 326 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 56 #