data_7TZJ # _model_server_result.job_id 6iTj1FOKuy0I8PlTj31GeA _model_server_result.datetime_utc '2025-07-08 06:03:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7tzj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":406}' # _entry.id 7TZJ # _exptl.entry_id 7TZJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7TZJ _cell.length_a 72.951 _cell.length_b 90.632 _cell.length_c 99.766 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7TZJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall 'P 2 2ab' _symmetry.space_group_name_H-M 'P 21 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,P 1 1 B,I,J,K,L,M,N,O,Q 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 H N N ? 4 O N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 18 A ASN 15 1_555 L ZN ZN . B ZN 404 3_455 ? ? ? ? ? ? ? ? ? ? ? ? 1.956 ? metalc ? metalc2 A NE2 HIS 20 A HIS 17 1_555 G ZN ZN . A ZN 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? metalc ? metalc3 A NE2 HIS 50 A HIS 47 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? metalc ? metalc4 A OE2 GLU 70 A GLU 67 1_555 G ZN ZN . A ZN 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.99 ? metalc ? metalc5 A NE2 HIS 76 A HIS 73 1_555 F ZN ZN . A ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.153 ? metalc ? metalc6 A ND1 HIS 92 A HIS 89 1_555 E ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? metalc ? metalc7 F ZN ZN . A ZN 404 1_555 P O HOH . A HOH 517 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.439 ? metalc ? metalc8 G ZN ZN . A ZN 405 1_555 P O HOH . A HOH 511 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.611 ? metalc ? metalc9 G ZN ZN . A ZN 405 3_445 B OD1 ASN 18 B ASN 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.829 ? metalc ? metalc10 B NE2 HIS 20 B HIS 17 1_555 L ZN ZN . B ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? metalc ? metalc11 B NE2 HIS 50 B HIS 47 1_555 M ZN ZN . B ZN 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.195 ? metalc ? metalc12 B OE2 GLU 70 B GLU 67 1_555 L ZN ZN . B ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.941 ? metalc ? metalc13 B NE2 HIS 76 B HIS 73 1_555 N ZN ZN . B ZN 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? metalc ? metalc14 B ND1 HIS 92 B HIS 89 1_555 J ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? metalc ? metalc15 B NE2 HIS 258 B HIS 255 1_555 K ZN ZN . B ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? metalc ? metalc16 M ZN ZN . B ZN 405 1_555 Q O HOH . B HOH 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.449 ? metalc ? metalc17 M ZN ZN . B ZN 405 1_555 Q O HOH . B HOH 511 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 83 n n S C1 DMS sing 84 n n S C2 DMS sing 85 n n C1 H11 DMS sing 86 n n C1 H12 DMS sing 87 n n C1 H13 DMS sing 88 n n C2 H21 DMS sing 89 n n C2 H22 DMS sing 90 n n C2 H23 DMS sing 91 n n # _atom_sites.entry_id 7TZJ _atom_sites.fract_transf_matrix[1][1] 0.013708 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011034 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010023 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 S88 A 1 401 401 S88 3K . D 3 ZN A 1 402 402 ZN ZN . E 3 ZN A 1 403 403 ZN ZN . F 3 ZN A 1 404 404 ZN ZN . G 3 ZN A 1 405 405 ZN ZN . H 4 DMS A 1 406 406 DMS DMS . I 2 S88 B 1 401 401 S88 3K . J 3 ZN B 1 402 402 ZN ZN . K 3 ZN B 1 403 403 ZN ZN . L 3 ZN B 1 404 404 ZN ZN . M 3 ZN B 1 405 405 ZN ZN . N 3 ZN B 1 406 406 ZN ZN . O 4 DMS B 1 407 407 DMS DMS . P 5 HOH A 1 501 11 HOH HOH . P 5 HOH A 2 502 29 HOH HOH . P 5 HOH A 3 503 20 HOH HOH . P 5 HOH A 4 504 18 HOH HOH . P 5 HOH A 5 505 22 HOH HOH . P 5 HOH A 6 506 1 HOH HOH . P 5 HOH A 7 507 25 HOH HOH . P 5 HOH A 8 508 19 HOH HOH . P 5 HOH A 9 509 31 HOH HOH . P 5 HOH A 10 510 9 HOH HOH . P 5 HOH A 11 511 26 HOH HOH . P 5 HOH A 12 512 5 HOH HOH . P 5 HOH A 13 513 21 HOH HOH . P 5 HOH A 14 514 8 HOH HOH . P 5 HOH A 15 515 4 HOH HOH . P 5 HOH A 16 516 10 HOH HOH . P 5 HOH A 17 517 30 HOH HOH . Q 5 HOH B 1 501 14 HOH HOH . Q 5 HOH B 2 502 6 HOH HOH . Q 5 HOH B 3 503 24 HOH HOH . Q 5 HOH B 4 504 12 HOH HOH . Q 5 HOH B 5 505 16 HOH HOH . Q 5 HOH B 6 506 28 HOH HOH . Q 5 HOH B 7 507 17 HOH HOH . Q 5 HOH B 8 508 13 HOH HOH . Q 5 HOH B 9 509 27 HOH HOH . Q 5 HOH B 10 510 15 HOH HOH . Q 5 HOH B 11 511 2 HOH HOH . Q 5 HOH B 12 512 23 HOH HOH . Q 5 HOH B 13 513 7 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . H 4 -2.204 5.637 -35.571 1 90.6 ? S DMS 406 A 1 HETATM 2 O O DMS . . . H 4 -1.259 6.407 -34.709 1 85.5 ? O DMS 406 A 1 HETATM 3 C C1 DMS . . . H 4 -1.485 4.016 -35.958 1 72.76 ? C1 DMS 406 A 1 HETATM 4 C C2 DMS . . . H 4 -3.636 5.127 -34.577 1 80.01 ? C2 DMS 406 A 1 HETATM 5 H H11 DMS . . . H 4 -2.173 3.452 -36.532 1 87.31 ? H11 DMS 406 A 1 HETATM 6 H H12 DMS . . . H 4 -1.27 3.501 -35.058 1 87.31 ? H12 DMS 406 A 1 HETATM 7 H H13 DMS . . . H 4 -0.591 4.15 -36.51 1 87.31 ? H13 DMS 406 A 1 HETATM 8 H H21 DMS . . . H 4 -4.192 4.397 -35.107 1 96.01 ? H21 DMS 406 A 1 HETATM 9 H H22 DMS . . . H 4 -4.251 5.967 -34.385 1 96.01 ? H22 DMS 406 A 1 HETATM 10 H H23 DMS . . . H 4 -3.302 4.717 -33.66 1 96.01 ? H23 DMS 406 A 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 340 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 10 #