data_7U04 # _model_server_result.job_id aaUIdrAt_WgLh59JlKLSRQ _model_server_result.datetime_utc '2024-11-09 23:22:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7u04 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 7U04 # _exptl.entry_id 7U04 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7U04 _cell.length_a 67.13 _cell.length_b 67.13 _cell.length_c 199.293 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7U04 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall 'P 32 2"' _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 24 L CYS 23 1_555 A SG CYS 90 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf2 A SG CYS 136 L CYS 134 1_555 A SG CYS 195 L CYS 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf3 B SG CYS 22 H CYS 22 1_555 B SG CYS 96 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf4 B SG CYS 153 H CYS 140 1_555 B SG CYS 209 H CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? covale ? covale1 B C PCA 1 H PCA 1 1_555 B N VAL 2 H VAL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 7U04 _atom_sites.fract_transf_matrix[1][1] 0.014896 _atom_sites.fract_transf_matrix[1][2] 0.0086 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017201 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005018 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GOL L 1 301 290 GOL GOL . D 3 GOL H 1 300 300 GOL GOL . E 3 GOL H 1 301 301 GOL GOL . F 4 HOH L 1 401 103 HOH HOH . F 4 HOH L 2 402 44 HOH HOH . F 4 HOH L 3 403 13 HOH HOH . F 4 HOH L 4 404 69 HOH HOH . F 4 HOH L 5 405 37 HOH HOH . F 4 HOH L 6 406 61 HOH HOH . F 4 HOH L 7 407 2 HOH HOH . F 4 HOH L 8 408 101 HOH HOH . F 4 HOH L 9 409 41 HOH HOH . F 4 HOH L 10 410 65 HOH HOH . F 4 HOH L 11 411 12 HOH HOH . F 4 HOH L 12 412 39 HOH HOH . F 4 HOH L 13 413 100 HOH HOH . F 4 HOH L 14 414 46 HOH HOH . F 4 HOH L 15 415 87 HOH HOH . F 4 HOH L 16 416 68 HOH HOH . F 4 HOH L 17 417 32 HOH HOH . F 4 HOH L 18 418 19 HOH HOH . F 4 HOH L 19 419 72 HOH HOH . F 4 HOH L 20 420 6 HOH HOH . F 4 HOH L 21 421 42 HOH HOH . F 4 HOH L 22 422 60 HOH HOH . F 4 HOH L 23 423 47 HOH HOH . F 4 HOH L 24 424 34 HOH HOH . F 4 HOH L 25 425 16 HOH HOH . F 4 HOH L 26 426 59 HOH HOH . F 4 HOH L 27 427 38 HOH HOH . F 4 HOH L 28 428 93 HOH HOH . G 4 HOH H 1 401 97 HOH HOH . G 4 HOH H 2 402 31 HOH HOH . G 4 HOH H 3 403 15 HOH HOH . G 4 HOH H 4 404 22 HOH HOH . G 4 HOH H 5 405 26 HOH HOH . G 4 HOH H 6 406 28 HOH HOH . G 4 HOH H 7 407 95 HOH HOH . G 4 HOH H 8 408 11 HOH HOH . G 4 HOH H 9 409 30 HOH HOH . G 4 HOH H 10 410 79 HOH HOH . G 4 HOH H 11 411 62 HOH HOH . G 4 HOH H 12 412 4 HOH HOH . G 4 HOH H 13 413 5 HOH HOH . G 4 HOH H 14 414 83 HOH HOH . G 4 HOH H 15 415 54 HOH HOH . G 4 HOH H 16 416 17 HOH HOH . G 4 HOH H 17 417 53 HOH HOH . G 4 HOH H 18 418 27 HOH HOH . G 4 HOH H 19 419 25 HOH HOH . G 4 HOH H 20 420 84 HOH HOH . G 4 HOH H 21 421 64 HOH HOH . G 4 HOH H 22 422 23 HOH HOH . G 4 HOH H 23 423 82 HOH HOH . G 4 HOH H 24 424 9 HOH HOH . G 4 HOH H 25 425 94 HOH HOH . G 4 HOH H 26 426 57 HOH HOH . G 4 HOH H 27 427 76 HOH HOH . G 4 HOH H 28 428 66 HOH HOH . G 4 HOH H 29 429 81 HOH HOH . G 4 HOH H 30 430 77 HOH HOH . G 4 HOH H 31 431 20 HOH HOH . G 4 HOH H 32 432 91 HOH HOH . G 4 HOH H 33 433 86 HOH HOH . G 4 HOH H 34 434 43 HOH HOH . G 4 HOH H 35 435 45 HOH HOH . G 4 HOH H 36 436 67 HOH HOH . G 4 HOH H 37 437 98 HOH HOH . G 4 HOH H 38 438 75 HOH HOH . G 4 HOH H 39 439 21 HOH HOH . G 4 HOH H 40 440 85 HOH HOH . G 4 HOH H 41 441 74 HOH HOH . G 4 HOH H 42 442 56 HOH HOH . G 4 HOH H 43 444 58 HOH HOH . G 4 HOH H 44 445 51 HOH HOH . G 4 HOH H 45 446 49 HOH HOH . G 4 HOH H 46 447 63 HOH HOH . G 4 HOH H 47 448 102 HOH HOH . G 4 HOH H 48 449 78 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 3 -7.434 -33.826 -105.861 1 56.22 ? C1 GOL 301 L 1 HETATM 2 O O1 GOL . . . C 3 -8.05 -33.025 -106.829 1 57.17 ? O1 GOL 301 L 1 HETATM 3 C C2 GOL . . . C 3 -8.543 -34.377 -104.919 1 57.67 ? C2 GOL 301 L 1 HETATM 4 O O2 GOL . . . C 3 -8.07 -35.398 -104.112 1 69.33 ? O2 GOL 301 L 1 HETATM 5 C C3 GOL . . . C 3 -9.013 -33.17 -104.086 1 60.23 ? C3 GOL 301 L 1 HETATM 6 O O3 GOL . . . C 3 -9.991 -33.642 -103.205 1 55.53 ? O3 GOL 301 L 1 HETATM 7 H H11 GOL . . . C 3 -6.785 -33.336 -105.333 1 59.56 ? H11 GOL 301 L 1 HETATM 8 H H12 GOL . . . C 3 -6.951 -34.572 -106.25 1 59.56 ? H12 GOL 301 L 1 HETATM 9 H HO1 GOL . . . C 3 -7.964 -32.219 -106.568 1 60.7 ? HO1 GOL 301 L 1 HETATM 10 H H2 GOL . . . C 3 -9.273 -34.744 -105.441 1 61.3 ? H2 GOL 301 L 1 HETATM 11 H HO2 GOL . . . C 3 -8.472 -35.35 -103.367 1 75.29 ? HO2 GOL 301 L 1 HETATM 12 H H31 GOL . . . C 3 -9.336 -32.48 -104.686 1 64.37 ? H31 GOL 301 L 1 HETATM 13 H H32 GOL . . . C 3 -8.246 -32.78 -103.637 1 64.37 ? H32 GOL 301 L 1 HETATM 14 H HO3 GOL . . . C 3 -10.25 -32.973 -102.745 1 58.74 ? HO3 GOL 301 L 1 # _model_server_stats.io_time_ms 31 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 14 #