data_7U0P # _model_server_result.job_id PA2nVc8P_FXk3MCuwoVejw _model_server_result.datetime_utc '2024-10-19 09:37:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7u0p # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"X","auth_seq_id":1304}' # _entry.id 7U0P # _exptl.entry_id 7U0P _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 221.208 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 22 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7U0P _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7U0P _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details heptameric _pdbx_struct_assembly.oligomeric_count 7 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 M N N ? 5 N N N ? 5 O N N ? 5 P N N ? 5 Q N N ? 5 R N N ? 5 S N N ? 5 T N N ? 5 U N N ? 5 V N N ? 5 W N N ? 5 X N N ? 5 Y N N ? 5 Z N N ? 5 AA N N ? 5 BA N N ? 5 CA N N ? 5 DA N N ? 5 EA N N ? 5 FA N N ? 5 GA N N ? 5 HA N N # _pdbx_entity_branch.entity_id 4 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 4 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 4 n H NAG 1 B1 1 NAG B1 1308 NAG 4 n H NAG 2 B1 2 NAG B1 1309 NAG 4 n I NAG 1 G 1 NAG B1 1310 NAG 4 n I NAG 2 G 2 NAG B1 1311 NAG 4 n J NAG 1 H 1 NAG B1 1312 NAG 4 n J NAG 2 H 2 NAG B1 1313 NAG 4 n K NAG 1 J 1 NAG B1 1314 NAG 4 n K NAG 2 J 2 NAG B1 1315 NAG 4 n L NAG 1 K 1 NAG B1 1402 NAG 4 n L NAG 2 K 2 NAG B1 1403 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 538 A CYS 538 1_555 A SG CYS 590 A CYS 590 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf2 A SG CYS 617 A CYS 617 1_555 A SG CYS 649 A CYS 649 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf3 A SG CYS 662 A CYS 662 1_555 A SG CYS 671 A CYS 671 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 A SG CYS 738 A CYS 738 1_555 A SG CYS 760 A CYS 760 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf5 A SG CYS 743 A CYS 743 1_555 A SG CYS 749 A CYS 749 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf6 A SG CYS 1032 A CYS 1032 1_555 A SG CYS 1043 A CYS 1043 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf7 A SG CYS 1082 A CYS 1082 1_555 A SG CYS 1126 A CYS 1126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf8 B SG CYS 336 B CYS 336 1_555 B SG CYS 361 B CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf9 C SG CYS 291 C CYS 291 1_555 C SG CYS 301 C CYS 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf10 C SG CYS 391 C CYS 391 1_555 C SG CYS 525 C CYS 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf11 C SG CYS 538 C CYS 538 1_555 C SG CYS 590 C CYS 590 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf12 C SG CYS 617 C CYS 617 1_555 C SG CYS 649 C CYS 649 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf13 C SG CYS 662 C CYS 662 1_555 C SG CYS 671 C CYS 671 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf14 C SG CYS 738 C CYS 738 1_555 C SG CYS 760 C CYS 760 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf15 C SG CYS 743 C CYS 743 1_555 C SG CYS 749 C CYS 749 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf16 C SG CYS 1032 C CYS 1032 1_555 C SG CYS 1043 C CYS 1043 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf17 C SG CYS 1082 C CYS 1082 1_555 C SG CYS 1126 C CYS 1126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf18 D SG CYS 22 E CYS 22 1_555 D SG CYS 96 E CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf19 E SG CYS 22 D CYS 22 1_555 E SG CYS 96 D CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf20 F SG CYS 23 I CYS 23 1_555 F SG CYS 88 I CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf21 F SG CYS 135 I CYS 135 1_555 F SG CYS 195 I CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf22 G SG CYS 23 F CYS 23 1_555 G SG CYS 88 F CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf23 G SG CYS 135 F CYS 135 1_555 G SG CYS 195 F CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? covale ? covale1 A ND2 ASN 282 A ASN 282 1_555 M C1 NAG . A NAG 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale2 A ND2 ASN 331 A ASN 331 1_555 N C1 NAG . A NAG 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale3 A ND2 ASN 603 A ASN 603 1_555 O C1 NAG . A NAG 1303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale4 A ND2 ASN 616 A ASN 616 1_555 P C1 NAG . A NAG 1304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale5 A ND2 ASN 709 A ASN 709 1_555 Q C1 NAG . A NAG 1305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale6 A ND2 ASN 717 A ASN 717 1_555 R C1 NAG . A NAG 1306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale7 A ND2 ASN 1098 A ASN 1098 1_555 S C1 NAG . A NAG 1307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? covale ? covale8 A ND2 ASN 1134 A ASN 1134 1_555 T C1 NAG . A NAG 1308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale9 B ND2 ASN 282 B ASN 282 1_555 U C1 NAG . B NAG 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale10 B ND2 ASN 343 B ASN 343 1_555 L C1 NAG . K NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale11 B ND2 ASN 603 B ASN 603 1_555 Z C1 NAG . B NAG 1306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale12 B ND2 ASN 616 B ASN 616 1_555 W C1 NAG . B NAG 1303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale13 B ND2 ASN 657 B ASN 657 1_555 V C1 NAG . B NAG 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale14 B ND2 ASN 709 B ASN 709 1_555 X C1 NAG . B NAG 1304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale15 B ND2 ASN 717 B ASN 717 1_555 J C1 NAG . H NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale16 B ND2 ASN 801 B ASN 801 1_555 K C1 NAG . J NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale17 B ND2 ASN 1074 B ASN 1074 1_555 Y C1 NAG . B NAG 1305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale18 B ND2 ASN 1098 B ASN 1098 1_555 I C1 NAG . G NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale19 B ND2 ASN 1134 B ASN 1134 1_555 H C1 NAG . B1 NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale20 C ND2 ASN 331 C ASN 331 1_555 AA C1 NAG . C NAG 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale21 C ND2 ASN 343 C ASN 343 1_555 HA C1 NAG . C NAG 1308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale22 C ND2 ASN 603 C ASN 603 1_555 BA C1 NAG . C NAG 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale23 C ND2 ASN 616 C ASN 616 1_555 CA C1 NAG . C NAG 1303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale24 C ND2 ASN 657 C ASN 657 1_555 DA C1 NAG . C NAG 1304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale25 C ND2 ASN 709 C ASN 709 1_555 EA C1 NAG . C NAG 1305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale26 C ND2 ASN 717 C ASN 717 1_555 FA C1 NAG . C NAG 1306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale27 C ND2 ASN 1134 C ASN 1134 1_555 GA C1 NAG . C NAG 1307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale28 H O4 NAG . B1 NAG 1 1_555 H C1 NAG . B1 NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale29 I O4 NAG . G NAG 1 1_555 I C1 NAG . G NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale30 J O4 NAG . H NAG 1 1_555 J C1 NAG . H NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale31 K O4 NAG . J NAG 1 1_555 K C1 NAG . J NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale32 L O4 NAG . K NAG 1 1_555 L C1 NAG . K NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 7U0P _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code M 5 NAG A 1 1301 1303 NAG NAG . N 5 NAG A 1 1302 1304 NAG NAG . O 5 NAG A 1 1303 1305 NAG NAG . P 5 NAG A 1 1304 1306 NAG NAG . Q 5 NAG A 1 1305 1308 NAG NAG . R 5 NAG A 1 1306 1309 NAG NAG . S 5 NAG A 1 1307 1310 NAG NAG . T 5 NAG A 1 1308 1311 NAG NAG . U 5 NAG B 1 1301 1301 NAG NAG . V 5 NAG B 1 1302 1302 NAG NAG . W 5 NAG B 1 1303 1303 NAG NAG . X 5 NAG B 1 1304 1304 NAG NAG . Y 5 NAG B 1 1305 1305 NAG NAG . Z 5 NAG B 1 1306 1306 NAG NAG . AA 5 NAG C 1 1301 1304 NAG NAG . BA 5 NAG C 1 1302 1305 NAG NAG . CA 5 NAG C 1 1303 1306 NAG NAG . DA 5 NAG C 1 1304 1307 NAG NAG . EA 5 NAG C 1 1305 1308 NAG NAG . FA 5 NAG C 1 1306 1309 NAG NAG . GA 5 NAG C 1 1307 1311 NAG NAG . HA 5 NAG C 1 1308 1401 NAG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . X 5 201.075 250.283 292.341 1 104.19 ? C1 NAG 1304 B 1 HETATM 2 C C2 NAG . . . X 5 199.586 250.245 292.704 1 104.19 ? C2 NAG 1304 B 1 HETATM 3 C C3 NAG . . . X 5 199.197 251.511 293.468 1 104.19 ? C3 NAG 1304 B 1 HETATM 4 C C4 NAG . . . X 5 200.125 251.727 294.656 1 104.19 ? C4 NAG 1304 B 1 HETATM 5 C C5 NAG . . . X 5 201.581 251.704 294.2 1 104.19 ? C5 NAG 1304 B 1 HETATM 6 C C6 NAG . . . X 5 202.564 251.808 295.342 1 104.19 ? C6 NAG 1304 B 1 HETATM 7 C C7 NAG . . . X 5 197.519 249.602 291.543 1 104.19 ? C7 NAG 1304 B 1 HETATM 8 C C8 NAG . . . X 5 196.816 249.518 290.222 1 104.19 ? C8 NAG 1304 B 1 HETATM 9 N N2 NAG . . . X 5 198.763 250.093 291.515 1 104.19 ? N2 NAG 1304 B 1 HETATM 10 O O3 NAG . . . X 5 197.852 251.406 293.919 1 104.19 ? O3 NAG 1304 B 1 HETATM 11 O O4 NAG . . . X 5 199.847 252.981 295.269 1 104.19 ? O4 NAG 1304 B 1 HETATM 12 O O5 NAG . . . X 5 201.855 250.467 293.527 1 104.19 ? O5 NAG 1304 B 1 HETATM 13 O O6 NAG . . . X 5 203.9 251.9 294.868 1 104.19 ? O6 NAG 1304 B 1 HETATM 14 O O7 NAG . . . X 5 196.985 249.243 292.588 1 104.19 ? O7 NAG 1304 B 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #