data_7U1D
#
_model_server_result.job_id            yH_ynemb7iNbT7kVZLcXmw 
_model_server_result.datetime_utc      '2024-11-02 21:30:29' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7u1d 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":702}' 
#
_entry.id    7U1D 
#
_exptl.entry_id    7U1D 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              785.55 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN-ADENINE DINUCLEOTIDE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            7U1D 
_cell.length_a            178.479 
_cell.length_b            178.479 
_cell.length_c            184.169 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7U1D 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        181 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 64 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 12_544 x,x-y-1,-z-1/3 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 89.2395 -154.567348 -61.389667 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C PRO 254 A PRO 339 1_555 A N CSD 255 A CSD 340 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale2 A C CSD 255 A CSD 340 1_555 A N ASP 256 A ASP 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
metalc ? metalc1 A O ILE 316 A ILE 401 1_555 I MG MG . A MG 708 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.599 ? 
metalc ? metalc2 A O ILE 316 A ILE 401 1_555 I MG MG . A MG 708 4_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.599 ? 
metalc ? metalc3 A OD1 ASP 453 A ASP 538 1_555 B MG MG . A MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.153 ? 
metalc ? metalc4 A O MET 458 A MET 543 1_555 H MG MG . A MG 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.492 ? 
metalc ? metalc5 A O MET 458 A MET 543 1_555 H MG MG . A MG 707 12_544 ? ? ? ? ? ? ? ? ? ? ? ? 2.491 ? 
metalc ? metalc6 A OE1 GLN 461 A GLN 546 1_555 H MG MG . A MG 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.48 ? 
metalc ? metalc7 A OE1 GLN 461 A GLN 546 1_555 H MG MG . A MG 707 12_544 ? ? ? ? ? ? ? ? ? ? ? ? 2.48 ? 
metalc ? metalc8 A OD1 ASN 480 A ASN 565 1_555 B MG MG . A MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? 
metalc ? metalc9 A O HIS 482 A HIS 567 1_555 B MG MG . A MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? 
metalc ? metalc10 B MG MG . A MG 701 1_555 G O1A TP9 . A TP9 706 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.009 ? 
metalc ? metalc11 B MG MG . A MG 701 1_555 G O3B TP9 . A TP9 706 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.218 ? 
#
_chem_comp.formula           'C27 H33 N9 O15 P2' 
_chem_comp.formula_weight    785.55 
_chem_comp.id                FAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN-ADENINE DINUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A FAD doub 149 n n 
PA O2A FAD sing 150 n n 
PA O5B FAD sing 151 n n 
PA O3P FAD sing 152 n n 
O2A HOA2 FAD sing 153 n n 
O5B C5B FAD sing 154 n n 
C5B C4B FAD sing 155 n n 
C5B H51A FAD sing 156 n n 
C5B H52A FAD sing 157 n n 
C4B O4B FAD sing 158 n n 
C4B C3B FAD sing 159 n n 
C4B H4B FAD sing 160 n n 
O4B C1B FAD sing 161 n n 
C3B O3B FAD sing 162 n n 
C3B C2B FAD sing 163 n n 
C3B H3B FAD sing 164 n n 
O3B HO3A FAD sing 165 n n 
C2B O2B FAD sing 166 n n 
C2B C1B FAD sing 167 n n 
C2B H2B FAD sing 168 n n 
O2B HO2A FAD sing 169 n n 
C1B N9A FAD sing 170 n n 
C1B H1B FAD sing 171 n n 
N9A C8A FAD sing 172 n y 
N9A C4A FAD sing 173 n y 
C8A N7A FAD doub 174 n y 
C8A H8A FAD sing 175 n n 
N7A C5A FAD sing 176 n y 
C5A C6A FAD sing 177 n y 
C5A C4A FAD doub 178 n y 
C6A N6A FAD sing 179 n n 
C6A N1A FAD doub 180 n y 
N6A H61A FAD sing 181 n n 
N6A H62A FAD sing 182 n n 
N1A C2A FAD sing 183 n y 
C2A N3A FAD doub 184 n y 
C2A H2A FAD sing 185 n n 
N3A C4A FAD sing 186 n y 
N1 C2 FAD sing 187 n n 
N1 C10 FAD doub 188 n n 
C2 O2 FAD doub 189 n n 
C2 N3 FAD sing 190 n n 
N3 C4 FAD sing 191 n n 
N3 HN3 FAD sing 192 n n 
C4 O4 FAD doub 193 n n 
C4 C4X FAD sing 194 n n 
C4X N5 FAD doub 195 n n 
C4X C10 FAD sing 196 n n 
N5 C5X FAD sing 197 n n 
C5X C6 FAD doub 198 n y 
C5X C9A FAD sing 199 n y 
C6 C7 FAD sing 200 n y 
C6 H6 FAD sing 201 n n 
C7 C7M FAD sing 202 n n 
C7 C8 FAD doub 203 n y 
C7M HM71 FAD sing 204 n n 
C7M HM72 FAD sing 205 n n 
C7M HM73 FAD sing 206 n n 
C8 C8M FAD sing 207 n n 
C8 C9 FAD sing 208 n y 
C8M HM81 FAD sing 209 n n 
C8M HM82 FAD sing 210 n n 
C8M HM83 FAD sing 211 n n 
C9 C9A FAD doub 212 n y 
C9 H9 FAD sing 213 n n 
C9A N10 FAD sing 214 n n 
N10 C10 FAD sing 215 n n 
N10 C1' FAD sing 216 n n 
C1' C2' FAD sing 217 n n 
C1' "H1'1" FAD sing 218 n n 
C1' "H1'2" FAD sing 219 n n 
C2' O2' FAD sing 220 n n 
C2' C3' FAD sing 221 n n 
C2' H2' FAD sing 222 n n 
O2' HO2' FAD sing 223 n n 
C3' O3' FAD sing 224 n n 
C3' C4' FAD sing 225 n n 
C3' H3' FAD sing 226 n n 
O3' HO3' FAD sing 227 n n 
C4' O4' FAD sing 228 n n 
C4' C5' FAD sing 229 n n 
C4' H4' FAD sing 230 n n 
O4' HO4' FAD sing 231 n n 
C5' O5' FAD sing 232 n n 
C5' "H5'1" FAD sing 233 n n 
C5' "H5'2" FAD sing 234 n n 
O5' P FAD sing 235 n n 
P O1P FAD doub 236 n n 
P O2P FAD sing 237 n n 
P O3P FAD sing 238 n n 
O2P HOP2 FAD sing 239 n n 
#
_atom_sites.entry_id                     7U1D 
_atom_sites.fract_transf_matrix[1][1]    0.005603 
_atom_sites.fract_transf_matrix[1][2]    0.003235 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00647 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00543 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MG A 1 701 701 MG MG . 
C 3 FAD A 1 702 702 FAD FAD . 
D 4 CIE A 1 703 801 CIE CIE . 
E 5 NHE A 1 704 901 NHE NHE . 
F 6 F50 A 1 705 1001 F50 PER . 
G 7 TP9 A 1 706 1101 TP9 TP9 . 
H 2 MG A 1 707 1 MG MG . 
I 2 MG A 1 708 2 MG MG . 
J 8 SO4 A 1 709 1 SO4 SO4 . 
K 8 SO4 A 1 710 2 SO4 SO4 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA FAD . . . C 3 57.891 -67.868 -8.646 1 62.1 ? PA FAD 702 A 1 
HETATM 2 O O1A FAD . . . C 3 58.626 -66.582 -8.251 1 45.01 ? O1A FAD 702 A 1 
HETATM 3 O O2A FAD . . . C 3 58.364 -68.336 -10.004 1 82.3 ? O2A FAD 702 A 1 
HETATM 4 O O5B FAD . . . C 3 56.298 -67.588 -8.705 1 79.67 ? O5B FAD 702 A 1 
HETATM 5 C C5B FAD . . . C 3 55.662 -66.837 -7.636 1 64.74 ? C5B FAD 702 A 1 
HETATM 6 C C4B FAD . . . C 3 54.641 -67.751 -6.959 1 60.34 ? C4B FAD 702 A 1 
HETATM 7 O O4B FAD . . . C 3 53.928 -67.064 -5.922 1 76.76 ? O4B FAD 702 A 1 
HETATM 8 C C3B FAD . . . C 3 53.623 -68.203 -7.949 1 72.84 ? C3B FAD 702 A 1 
HETATM 9 O O3B FAD . . . C 3 53.167 -69.519 -7.616 1 57.12 ? O3B FAD 702 A 1 
HETATM 10 C C2B FAD . . . C 3 52.524 -67.235 -7.801 1 66.46 ? C2B FAD 702 A 1 
HETATM 11 O O2B FAD . . . C 3 51.257 -67.864 -8.06 1 70.81 ? O2B FAD 702 A 1 
HETATM 12 C C1B FAD . . . C 3 52.582 -66.806 -6.398 1 75.35 ? C1B FAD 702 A 1 
HETATM 13 N N9A FAD . . . C 3 52.294 -65.432 -6.268 1 67.31 ? N9A FAD 702 A 1 
HETATM 14 C C8A FAD . . . C 3 52.677 -64.472 -7.095 1 71.75 ? C8A FAD 702 A 1 
HETATM 15 N N7A FAD . . . C 3 52.223 -63.292 -6.656 1 62.46 ? N7A FAD 702 A 1 
HETATM 16 C C5A FAD . . . C 3 51.522 -63.496 -5.499 1 69.63 ? C5A FAD 702 A 1 
HETATM 17 C C6A FAD . . . C 3 50.812 -62.687 -4.566 1 73.36 ? C6A FAD 702 A 1 
HETATM 18 N N6A FAD . . . C 3 50.729 -61.314 -4.76 1 79.41 ? N6A FAD 702 A 1 
HETATM 19 N N1A FAD . . . C 3 50.223 -63.266 -3.495 1 74.45 ? N1A FAD 702 A 1 
HETATM 20 C C2A FAD . . . C 3 50.3 -64.561 -3.312 1 70.69 ? C2A FAD 702 A 1 
HETATM 21 N N3A FAD . . . C 3 50.955 -65.366 -4.157 1 68.1 ? N3A FAD 702 A 1 
HETATM 22 C C4A FAD . . . C 3 51.569 -64.871 -5.248 1 71.51 ? C4A FAD 702 A 1 
HETATM 23 N N1 FAD . . . C 3 65.777 -71.1 -7.245 1 74.92 ? N1 FAD 702 A 1 
HETATM 24 C C2 FAD . . . C 3 65.99 -71.309 -5.85 1 76.16 ? C2 FAD 702 A 1 
HETATM 25 O O2 FAD . . . C 3 65.195 -70.863 -5.041 1 70.52 ? O2 FAD 702 A 1 
HETATM 26 N N3 FAD . . . C 3 67.09 -72.016 -5.418 1 81.3 ? N3 FAD 702 A 1 
HETATM 27 C C4 FAD . . . C 3 67.994 -72.524 -6.328 1 69.65 ? C4 FAD 702 A 1 
HETATM 28 O O4 FAD . . . C 3 68.958 -73.145 -5.924 1 76.71 ? O4 FAD 702 A 1 
HETATM 29 C C4X FAD . . . C 3 67.79 -72.312 -7.817 1 79.35 ? C4X FAD 702 A 1 
HETATM 30 N N5 FAD . . . C 3 68.683 -72.812 -8.762 1 83.75 ? N5 FAD 702 A 1 
HETATM 31 C C5X FAD . . . C 3 68.665 -72.268 -10.016 1 77.35 ? C5X FAD 702 A 1 
HETATM 32 C C6 FAD . . . C 3 69.766 -72.438 -10.87 1 77.6 ? C6 FAD 702 A 1 
HETATM 33 C C7 FAD . . . C 3 69.75 -71.88 -12.157 1 71.71 ? C7 FAD 702 A 1 
HETATM 34 C C7M FAD . . . C 3 70.962 -72.065 -13.094 1 75.16 ? C7M FAD 702 A 1 
HETATM 35 C C8 FAD . . . C 3 68.633 -71.156 -12.591 1 67.64 ? C8 FAD 702 A 1 
HETATM 36 C C8M FAD . . . C 3 68.607 -70.543 -13.996 1 53.16 ? C8M FAD 702 A 1 
HETATM 37 C C9 FAD . . . C 3 67.537 -70.988 -11.74 1 88.17 ? C9 FAD 702 A 1 
HETATM 38 C C9A FAD . . . C 3 67.553 -71.548 -10.445 1 80.12 ? C9A FAD 702 A 1 
HETATM 39 N N10 FAD . . . C 3 66.48 -71.395 -9.589 1 82.47 ? N10 FAD 702 A 1 
HETATM 40 C C10 FAD . . . C 3 66.685 -71.603 -8.234 1 81.32 ? C10 FAD 702 A 1 
HETATM 41 C C1' FAD . . . C 3 65.317 -70.714 -10.017 1 80.68 ? C1' FAD 702 A 1 
HETATM 42 C C2' FAD . . . C 3 64.106 -71.684 -10.043 1 67.34 ? C2' FAD 702 A 1 
HETATM 43 O O2' FAD . . . C 3 64.037 -72.289 -11.321 1 62.81 ? O2' FAD 702 A 1 
HETATM 44 C C3' FAD . . . C 3 62.767 -70.903 -9.77 1 78.73 ? C3' FAD 702 A 1 
HETATM 45 O O3' FAD . . . C 3 62.828 -69.675 -10.354 1 76.04 ? O3' FAD 702 A 1 
HETATM 46 C C4' FAD . . . C 3 62.543 -70.765 -8.289 1 73.01 ? C4' FAD 702 A 1 
HETATM 47 O O4' FAD . . . C 3 63.064 -71.926 -7.638 1 92.25 ? O4' FAD 702 A 1 
HETATM 48 C C5' FAD . . . C 3 61.071 -70.669 -8.001 1 78.5 ? C5' FAD 702 A 1 
HETATM 49 O O5' FAD . . . C 3 60.742 -69.348 -7.635 1 62.3 ? O5' FAD 702 A 1 
HETATM 50 P P FAD . . . C 3 59.443 -69.131 -6.702 1 69.87 ? P FAD 702 A 1 
HETATM 51 O O1P FAD . . . C 3 59.27 -70.35 -5.789 1 63.42 ? O1P FAD 702 A 1 
HETATM 52 O O2P FAD . . . C 3 59.611 -67.872 -5.858 1 60.54 ? O2P FAD 702 A 1 
HETATM 53 O O3P FAD . . . C 3 58.156 -68.995 -7.591 1 75.43 ? O3P FAD 702 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           352 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           53 
#