data_7U1O # _model_server_result.job_id hz5JxHVC2ihUXRcqZgPuGw _model_server_result.datetime_utc '2024-11-29 21:45:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7u1o # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":401}' # _entry.id 7U1O # _exptl.entry_id 7U1O _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 102.046 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MALONATE ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7U1O _cell.length_a 105.663 _cell.length_b 105.663 _cell.length_c 157.742 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7U1O _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,H 1 1 B,E,F,G,I 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # _chem_comp.formula 'C3 H2 O4 -2' _chem_comp.formula_weight 102.046 _chem_comp.id MLI _chem_comp.mon_nstd_flag . _chem_comp.name 'MALONATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MLI sing 237 n n C1 C3 MLI sing 238 n n C1 H11 MLI sing 239 n n C1 H12 MLI sing 240 n n C2 O6 MLI doub 241 n n C2 O7 MLI sing 242 n n C3 O8 MLI doub 243 n n C3 O9 MLI sing 244 n n # _atom_sites.entry_id 7U1O _atom_sites.fract_transf_matrix[1][1] 0.009464 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009464 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006339 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 QEO A 1 400 400 QEO QEZ . D 3 MLI A 1 401 401 MLI MLI . E 2 QEO B 1 400 400 QEO QEZ . F 3 MLI B 1 401 401 MLI MLI . G 4 PEG B 1 402 402 PEG PEG . H 5 HOH A 1 501 59 HOH HOH . H 5 HOH A 2 502 25 HOH HOH . H 5 HOH A 3 503 123 HOH HOH . H 5 HOH A 4 504 257 HOH HOH . H 5 HOH A 5 505 242 HOH HOH . H 5 HOH A 6 506 243 HOH HOH . H 5 HOH A 7 507 137 HOH HOH . H 5 HOH A 8 508 139 HOH HOH . H 5 HOH A 9 509 20 HOH HOH . H 5 HOH A 10 510 148 HOH HOH . H 5 HOH A 11 511 149 HOH HOH . H 5 HOH A 12 512 266 HOH HOH . H 5 HOH A 13 513 236 HOH HOH . H 5 HOH A 14 514 114 HOH HOH . H 5 HOH A 15 515 95 HOH HOH . H 5 HOH A 16 516 265 HOH HOH . H 5 HOH A 17 517 150 HOH HOH . H 5 HOH A 18 518 40 HOH HOH . H 5 HOH A 19 519 60 HOH HOH . H 5 HOH A 20 520 262 HOH HOH . H 5 HOH A 21 521 22 HOH HOH . H 5 HOH A 22 522 259 HOH HOH . H 5 HOH A 23 523 57 HOH HOH . H 5 HOH A 24 524 179 HOH HOH . H 5 HOH A 25 525 85 HOH HOH . H 5 HOH A 26 526 96 HOH HOH . H 5 HOH A 27 527 138 HOH HOH . H 5 HOH A 28 528 108 HOH HOH . H 5 HOH A 29 529 41 HOH HOH . H 5 HOH A 30 530 88 HOH HOH . H 5 HOH A 31 531 44 HOH HOH . H 5 HOH A 32 532 264 HOH HOH . H 5 HOH A 33 533 188 HOH HOH . H 5 HOH A 34 534 176 HOH HOH . H 5 HOH A 35 535 39 HOH HOH . H 5 HOH A 36 536 229 HOH HOH . H 5 HOH A 37 537 146 HOH HOH . H 5 HOH A 38 538 45 HOH HOH . H 5 HOH A 39 539 87 HOH HOH . H 5 HOH A 40 540 43 HOH HOH . H 5 HOH A 41 541 141 HOH HOH . H 5 HOH A 42 542 222 HOH HOH . H 5 HOH A 43 543 50 HOH HOH . H 5 HOH A 44 544 202 HOH HOH . H 5 HOH A 45 545 23 HOH HOH . H 5 HOH A 46 546 93 HOH HOH . H 5 HOH A 47 547 174 HOH HOH . H 5 HOH A 48 548 55 HOH HOH . H 5 HOH A 49 549 210 HOH HOH . H 5 HOH A 50 550 197 HOH HOH . H 5 HOH A 51 551 177 HOH HOH . H 5 HOH A 52 552 80 HOH HOH . H 5 HOH A 53 553 97 HOH HOH . H 5 HOH A 54 554 201 HOH HOH . H 5 HOH A 55 555 61 HOH HOH . H 5 HOH A 56 556 193 HOH HOH . H 5 HOH A 57 557 153 HOH HOH . H 5 HOH A 58 558 86 HOH HOH . H 5 HOH A 59 559 21 HOH HOH . H 5 HOH A 60 560 51 HOH HOH . H 5 HOH A 61 561 16 HOH HOH . H 5 HOH A 62 562 109 HOH HOH . H 5 HOH A 63 563 53 HOH HOH . H 5 HOH A 64 564 194 HOH HOH . H 5 HOH A 65 565 211 HOH HOH . H 5 HOH A 66 566 173 HOH HOH . H 5 HOH A 67 567 94 HOH HOH . H 5 HOH A 68 568 170 HOH HOH . H 5 HOH A 69 569 250 HOH HOH . H 5 HOH A 70 570 105 HOH HOH . H 5 HOH A 71 571 213 HOH HOH . H 5 HOH A 72 572 56 HOH HOH . H 5 HOH A 73 573 166 HOH HOH . H 5 HOH A 74 574 42 HOH HOH . H 5 HOH A 75 575 159 HOH HOH . H 5 HOH A 76 576 145 HOH HOH . H 5 HOH A 77 577 66 HOH HOH . H 5 HOH A 78 578 226 HOH HOH . H 5 HOH A 79 579 52 HOH HOH . H 5 HOH A 80 580 167 HOH HOH . H 5 HOH A 81 581 84 HOH HOH . H 5 HOH A 82 582 142 HOH HOH . H 5 HOH A 83 583 129 HOH HOH . H 5 HOH A 84 584 58 HOH HOH . H 5 HOH A 85 585 260 HOH HOH . H 5 HOH A 86 586 151 HOH HOH . H 5 HOH A 87 587 158 HOH HOH . H 5 HOH A 88 588 143 HOH HOH . H 5 HOH A 89 589 161 HOH HOH . H 5 HOH A 90 590 200 HOH HOH . H 5 HOH A 91 591 67 HOH HOH . H 5 HOH A 92 592 225 HOH HOH . H 5 HOH A 93 593 154 HOH HOH . H 5 HOH A 94 594 13 HOH HOH . H 5 HOH A 95 595 221 HOH HOH . H 5 HOH A 96 596 175 HOH HOH . H 5 HOH A 97 597 214 HOH HOH . H 5 HOH A 98 598 54 HOH HOH . H 5 HOH A 99 599 228 HOH HOH . H 5 HOH A 100 600 152 HOH HOH . H 5 HOH A 101 601 15 HOH HOH . H 5 HOH A 102 602 230 HOH HOH . H 5 HOH A 103 603 24 HOH HOH . H 5 HOH A 104 604 172 HOH HOH . H 5 HOH A 105 605 208 HOH HOH . H 5 HOH A 106 606 223 HOH HOH . H 5 HOH A 107 607 261 HOH HOH . H 5 HOH A 108 608 258 HOH HOH . H 5 HOH A 109 609 209 HOH HOH . H 5 HOH A 110 610 140 HOH HOH . H 5 HOH A 111 611 92 HOH HOH . H 5 HOH A 112 612 144 HOH HOH . H 5 HOH A 113 613 178 HOH HOH . H 5 HOH A 114 614 224 HOH HOH . H 5 HOH A 115 615 19 HOH HOH . H 5 HOH A 116 616 268 HOH HOH . H 5 HOH A 117 617 251 HOH HOH . H 5 HOH A 118 618 122 HOH HOH . I 5 HOH B 1 501 237 HOH HOH . I 5 HOH B 2 502 116 HOH HOH . I 5 HOH B 3 503 235 HOH HOH . I 5 HOH B 4 504 181 HOH HOH . I 5 HOH B 5 505 101 HOH HOH . I 5 HOH B 6 506 104 HOH HOH . I 5 HOH B 7 507 227 HOH HOH . I 5 HOH B 8 508 206 HOH HOH . I 5 HOH B 9 509 91 HOH HOH . I 5 HOH B 10 510 79 HOH HOH . I 5 HOH B 11 511 75 HOH HOH . I 5 HOH B 12 512 180 HOH HOH . I 5 HOH B 13 513 160 HOH HOH . I 5 HOH B 14 514 234 HOH HOH . I 5 HOH B 15 515 72 HOH HOH . I 5 HOH B 16 516 204 HOH HOH . I 5 HOH B 17 517 47 HOH HOH . I 5 HOH B 18 518 76 HOH HOH . I 5 HOH B 19 519 190 HOH HOH . I 5 HOH B 20 520 83 HOH HOH . I 5 HOH B 21 521 219 HOH HOH . I 5 HOH B 22 522 107 HOH HOH . I 5 HOH B 23 523 215 HOH HOH . I 5 HOH B 24 524 111 HOH HOH . I 5 HOH B 25 525 2 HOH HOH . I 5 HOH B 26 526 247 HOH HOH . I 5 HOH B 27 527 33 HOH HOH . I 5 HOH B 28 528 90 HOH HOH . I 5 HOH B 29 529 185 HOH HOH . I 5 HOH B 30 530 27 HOH HOH . I 5 HOH B 31 531 231 HOH HOH . I 5 HOH B 32 532 162 HOH HOH . I 5 HOH B 33 533 34 HOH HOH . I 5 HOH B 34 534 169 HOH HOH . I 5 HOH B 35 535 102 HOH HOH . I 5 HOH B 36 536 239 HOH HOH . I 5 HOH B 37 537 191 HOH HOH . I 5 HOH B 38 538 38 HOH HOH . I 5 HOH B 39 539 115 HOH HOH . I 5 HOH B 40 540 127 HOH HOH . I 5 HOH B 41 541 156 HOH HOH . I 5 HOH B 42 542 46 HOH HOH . I 5 HOH B 43 543 6 HOH HOH . I 5 HOH B 44 544 198 HOH HOH . I 5 HOH B 45 545 192 HOH HOH . I 5 HOH B 46 546 131 HOH HOH . I 5 HOH B 47 547 69 HOH HOH . I 5 HOH B 48 548 82 HOH HOH . I 5 HOH B 49 549 28 HOH HOH . I 5 HOH B 50 550 11 HOH HOH . I 5 HOH B 51 551 168 HOH HOH . I 5 HOH B 52 552 132 HOH HOH . I 5 HOH B 53 553 29 HOH HOH . I 5 HOH B 54 554 98 HOH HOH . I 5 HOH B 55 555 3 HOH HOH . I 5 HOH B 56 556 9 HOH HOH . I 5 HOH B 57 557 62 HOH HOH . I 5 HOH B 58 558 241 HOH HOH . I 5 HOH B 59 559 32 HOH HOH . I 5 HOH B 60 560 216 HOH HOH . I 5 HOH B 61 561 1 HOH HOH . I 5 HOH B 62 562 164 HOH HOH . I 5 HOH B 63 563 35 HOH HOH . I 5 HOH B 64 564 165 HOH HOH . I 5 HOH B 65 565 74 HOH HOH . I 5 HOH B 66 566 254 HOH HOH . I 5 HOH B 67 567 155 HOH HOH . I 5 HOH B 68 568 7 HOH HOH . I 5 HOH B 69 569 99 HOH HOH . I 5 HOH B 70 570 63 HOH HOH . I 5 HOH B 71 571 30 HOH HOH . I 5 HOH B 72 572 81 HOH HOH . I 5 HOH B 73 573 89 HOH HOH . I 5 HOH B 74 574 113 HOH HOH . I 5 HOH B 75 575 182 HOH HOH . I 5 HOH B 76 576 212 HOH HOH . I 5 HOH B 77 577 157 HOH HOH . I 5 HOH B 78 578 64 HOH HOH . I 5 HOH B 79 579 267 HOH HOH . I 5 HOH B 80 580 253 HOH HOH . I 5 HOH B 81 581 12 HOH HOH . I 5 HOH B 82 582 134 HOH HOH . I 5 HOH B 83 583 126 HOH HOH . I 5 HOH B 84 584 117 HOH HOH . I 5 HOH B 85 585 77 HOH HOH . I 5 HOH B 86 586 100 HOH HOH . I 5 HOH B 87 587 240 HOH HOH . I 5 HOH B 88 588 255 HOH HOH . I 5 HOH B 89 589 4 HOH HOH . I 5 HOH B 90 590 205 HOH HOH . I 5 HOH B 91 591 37 HOH HOH . I 5 HOH B 92 592 189 HOH HOH . I 5 HOH B 93 593 218 HOH HOH . I 5 HOH B 94 594 10 HOH HOH . I 5 HOH B 95 595 36 HOH HOH . I 5 HOH B 96 596 70 HOH HOH . I 5 HOH B 97 597 186 HOH HOH . I 5 HOH B 98 598 130 HOH HOH . I 5 HOH B 99 599 103 HOH HOH . I 5 HOH B 100 600 147 HOH HOH . I 5 HOH B 101 601 256 HOH HOH . I 5 HOH B 102 602 65 HOH HOH . I 5 HOH B 103 603 120 HOH HOH . I 5 HOH B 104 604 73 HOH HOH . I 5 HOH B 105 605 5 HOH HOH . I 5 HOH B 106 606 8 HOH HOH . I 5 HOH B 107 607 18 HOH HOH . I 5 HOH B 108 608 171 HOH HOH . I 5 HOH B 109 609 133 HOH HOH . I 5 HOH B 110 610 78 HOH HOH . I 5 HOH B 111 611 68 HOH HOH . I 5 HOH B 112 612 71 HOH HOH . I 5 HOH B 113 613 121 HOH HOH . I 5 HOH B 114 614 31 HOH HOH . I 5 HOH B 115 615 217 HOH HOH . I 5 HOH B 116 616 26 HOH HOH . I 5 HOH B 117 617 183 HOH HOH . I 5 HOH B 118 618 238 HOH HOH . I 5 HOH B 119 619 128 HOH HOH . I 5 HOH B 120 620 110 HOH HOH . I 5 HOH B 121 621 119 HOH HOH . I 5 HOH B 122 622 249 HOH HOH . I 5 HOH B 123 623 49 HOH HOH . I 5 HOH B 124 624 248 HOH HOH . I 5 HOH B 125 625 124 HOH HOH . I 5 HOH B 126 626 184 HOH HOH . I 5 HOH B 127 627 118 HOH HOH . I 5 HOH B 128 628 252 HOH HOH . I 5 HOH B 129 629 195 HOH HOH . I 5 HOH B 130 630 135 HOH HOH . I 5 HOH B 131 631 136 HOH HOH . I 5 HOH B 132 632 196 HOH HOH . I 5 HOH B 133 633 17 HOH HOH . I 5 HOH B 134 634 48 HOH HOH . I 5 HOH B 135 635 245 HOH HOH . I 5 HOH B 136 636 106 HOH HOH . I 5 HOH B 137 637 112 HOH HOH . I 5 HOH B 138 638 125 HOH HOH . I 5 HOH B 139 639 246 HOH HOH . I 5 HOH B 140 640 263 HOH HOH . I 5 HOH B 141 641 163 HOH HOH . I 5 HOH B 142 642 233 HOH HOH . I 5 HOH B 143 643 203 HOH HOH . I 5 HOH B 144 644 232 HOH HOH . I 5 HOH B 145 645 187 HOH HOH . I 5 HOH B 146 646 14 HOH HOH . I 5 HOH B 147 647 199 HOH HOH . I 5 HOH B 148 648 220 HOH HOH . I 5 HOH B 149 649 244 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MLI . . . D 3 78.044 11.571 69.813 1 85.38 ? C1 MLI 401 A 1 HETATM 2 C C2 MLI . . . D 3 78.479 10.346 69.004 1 87.53 ? C2 MLI 401 A 1 HETATM 3 C C3 MLI . . . D 3 77.287 12.666 69.061 1 72.38 ? C3 MLI 401 A 1 HETATM 4 O O6 MLI . . . D 3 77.993 10.164 67.869 1 76.55 ? O6 MLI 401 A 1 HETATM 5 O O7 MLI . . . D 3 79.316 9.579 69.519 1 88.66 ? O7 MLI 401 A 1 HETATM 6 O O8 MLI . . . D 3 76.727 12.374 68.005 1 73.33 ? O8 MLI 401 A 1 HETATM 7 O O9 MLI . . . D 3 77.255 13.802 69.556 1 74.87 ? O9 MLI 401 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 7 #