data_7U1Q # _model_server_result.job_id mIx3NVs3LaGJK7rTMlbm6w _model_server_result.datetime_utc '2024-11-05 16:22:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7u1q # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":403}' # _entry.id 7U1Q # _exptl.entry_id 7U1Q _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 792.075 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description O-[(R)-{[(2R)-2,3-bis(octadecanoyloxy)propyl]oxy}(hydroxy)phosphoryl]-L-serine _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7U1Q _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7U1Q _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 I N N ? 6 M N N ? 6 O N N ? 6 R N N ? 6 U N N ? 6 CA N N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 3 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n F NAG 1 F 1 NAG E 2101 NAG 3 n F NAG 2 F 2 NAG E 2102 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 110 A CYS 110 1_555 A SG CYS 142 A CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 B SG CYS 110 B CYS 110 1_555 B SG CYS 142 B CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf3 C SG CYS 110 C CYS 110 1_555 C SG CYS 142 C CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf4 D SG CYS 110 D CYS 110 1_555 D SG CYS 142 D CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf5 E SG CYS 6 E CYS 6 1_555 E SG CYS 26 E CYS 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? covale ? covale1 E ND2 ASN 10 E ASN 10 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale2 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? metalc ? metalc1 A O THR 130 A THR 130 1_555 H K K . A K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.686 ? metalc ? metalc2 A OG1 THR 130 A THR 130 1_555 H K K . A K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.2 ? metalc ? metalc3 H K K . A K 402 1_555 B O THR 130 B THR 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.728 ? metalc ? metalc4 H K K . A K 402 1_555 B OG1 THR 130 B THR 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.851 ? metalc ? metalc5 H K K . A K 402 1_555 C O THR 130 C THR 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.7 ? metalc ? metalc6 H K K . A K 402 1_555 C OG1 THR 130 C THR 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.247 ? metalc ? metalc7 H K K . A K 402 1_555 D O THR 130 D THR 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.731 ? metalc ? metalc8 H K K . A K 402 1_555 D OG1 THR 130 D THR 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.232 ? # _chem_comp.formula 'C42 H82 N O10 P' _chem_comp.formula_weight 792.075 _chem_comp.id P5S _chem_comp.mon_nstd_flag . _chem_comp.name O-[(R)-{[(2R)-2,3-bis(octadecanoyloxy)propyl]oxy}(hydroxy)phosphoryl]-L-serine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'phosphatidyl serine' # _atom_sites.entry_id 7U1Q _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 ATP A 1 401 401 ATP ATP . H 5 K A 1 402 504 K K . I 6 P5S A 1 403 508 P5S P5S . J 7 POV A 1 404 505 POV POV . K 4 ATP B 1 401 401 ATP ATP . L 7 POV B 1 402 505 POV POV . M 6 P5S B 1 403 506 P5S P5S . N 4 ATP C 1 401 401 ATP ATP . O 6 P5S C 1 402 506 P5S P5S . P 7 POV C 1 403 505 POV POV . Q 4 ATP D 1 401 401 ATP ATP . R 6 P5S D 1 402 505 P5S P5S . S 7 POV D 1 403 506 POV POV . T 8 PTY E 1 1601 506 PTY PTY . U 6 P5S E 1 1602 507 P5S P5S . V 9 BJX E 1 1603 2001 BJX BJX . W 4 ATP E 1 1604 2002 ATP ATP . X 8 PTY E 1 1605 2011 PTY PTY . Y 7 POV E 1 1606 2003 POV POV . Z 8 PTY E 1 1607 2009 PTY PTY . AA 8 PTY E 1 1608 2005 PTY PTY . BA 8 PTY E 1 1609 2010 PTY PTY . CA 6 P5S E 1 1610 2007 P5S P5S . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C P5S . . . I 6 174.722 149.792 161.034 1 52.75 ? C P5S 403 A 1 HETATM 2 N N P5S . . . I 6 177.235 149.564 161.28 1 52.75 ? N P5S 403 A 1 HETATM 3 O O P5S . . . I 6 173.618 149.214 161.024 1 52.75 ? O P5S 403 A 1 HETATM 4 C C1 P5S . . . I 6 173.468 145.841 167.907 1 52.75 ? C1 P5S 403 A 1 HETATM 5 C C2 P5S . . . I 6 172.54 146.361 166.834 1 52.75 ? C2 P5S 403 A 1 HETATM 6 C C3 P5S . . . I 6 173.225 146.888 165.586 1 52.75 ? C3 P5S 403 A 1 HETATM 7 C CA P5S . . . I 6 175.935 149.013 161.608 1 52.75 ? CA P5S 403 A 1 HETATM 8 C CB P5S . . . I 6 175.773 148.931 163.122 1 52.75 ? CB P5S 403 A 1 HETATM 9 O OG P5S . . . I 6 175.314 147.66 163.538 1 52.75 ? OG P5S 403 A 1 HETATM 10 P P12 P5S . . . I 6 175.798 146.969 164.94 1 52.75 ? P12 P5S 403 A 1 HETATM 11 O O13 P5S . . . I 6 175.963 147.972 166.036 1 52.75 ? O13 P5S 403 A 1 HETATM 12 O O15 P5S . . . I 6 176.893 145.985 164.643 1 52.75 ? O15 P5S 403 A 1 HETATM 13 O O16 P5S . . . I 6 174.408 146.182 165.314 1 52.75 ? O16 P5S 403 A 1 HETATM 14 C C17 P5S . . . I 6 174.88 146.69 169.577 1 52.75 ? C17 P5S 403 A 1 HETATM 15 O O18 P5S . . . I 6 174.266 146.511 170.602 1 52.75 ? O18 P5S 403 A 1 HETATM 16 O O19 P5S . . . I 6 174.286 146.891 168.407 1 52.75 ? O19 P5S 403 A 1 HETATM 17 C C20 P5S . . . I 6 176.378 146.707 169.469 1 52.75 ? C20 P5S 403 A 1 HETATM 18 C C21 P5S . . . I 6 177.064 146.554 170.815 1 52.75 ? C21 P5S 403 A 1 HETATM 19 C C22 P5S . . . I 6 178.581 146.476 170.693 1 52.75 ? C22 P5S 403 A 1 HETATM 20 C C23 P5S . . . I 6 179.148 147.731 170.045 1 52.75 ? C23 P5S 403 A 1 HETATM 21 C C24 P5S . . . I 6 180.47 147.548 169.31 1 52.75 ? C24 P5S 403 A 1 HETATM 22 C C25 P5S . . . I 6 180.736 148.725 168.379 1 52.75 ? C25 P5S 403 A 1 HETATM 23 C C26 P5S . . . I 6 181.708 148.453 167.239 1 52.75 ? C26 P5S 403 A 1 HETATM 24 C C27 P5S . . . I 6 181.608 149.514 166.149 1 52.75 ? C27 P5S 403 A 1 HETATM 25 C C28 P5S . . . I 6 181.869 150.942 166.612 1 52.75 ? C28 P5S 403 A 1 HETATM 26 C C29 P5S . . . I 6 181.807 151.937 165.459 1 52.75 ? C29 P5S 403 A 1 HETATM 27 C C30 P5S . . . I 6 182.906 152.991 165.49 1 52.75 ? C30 P5S 403 A 1 HETATM 28 C C31 P5S . . . I 6 183.258 153.517 164.104 1 52.75 ? C31 P5S 403 A 1 HETATM 29 C C32 P5S . . . I 6 184.737 153.375 163.765 1 52.75 ? C32 P5S 403 A 1 HETATM 30 C C33 P5S . . . I 6 185.641 153.577 164.975 1 52.75 ? C33 P5S 403 A 1 HETATM 31 C C34 P5S . . . I 6 186.605 152.422 165.214 1 52.75 ? C34 P5S 403 A 1 HETATM 32 C C35 P5S . . . I 6 187.17 152.405 166.629 1 52.75 ? C35 P5S 403 A 1 HETATM 33 C C36 P5S . . . I 6 187.846 151.088 166.982 1 52.75 ? C36 P5S 403 A 1 HETATM 34 O O37 P5S . . . I 6 171.705 147.355 167.441 1 52.75 ? O37 P5S 403 A 1 HETATM 35 C C38 P5S . . . I 6 170.423 147.427 167.092 1 52.75 ? C38 P5S 403 A 1 HETATM 36 C C39 P5S . . . I 6 169.609 148.131 168.142 1 52.75 ? C39 P5S 403 A 1 HETATM 37 C C40 P5S . . . I 6 169.071 147.184 169.203 1 52.75 ? C40 P5S 403 A 1 HETATM 38 C C41 P5S . . . I 6 168.957 147.847 170.569 1 52.75 ? C41 P5S 403 A 1 HETATM 39 C C42 P5S . . . I 6 168.189 146.986 171.565 1 52.75 ? C42 P5S 403 A 1 HETATM 40 C C43 P5S . . . I 6 168.569 147.211 173.023 1 52.75 ? C43 P5S 403 A 1 HETATM 41 C C44 P5S . . . I 6 169.292 148.532 173.263 1 52.75 ? C44 P5S 403 A 1 HETATM 42 C C45 P5S . . . I 6 170.73 148.364 173.737 1 52.75 ? C45 P5S 403 A 1 HETATM 43 C C46 P5S . . . I 6 171.454 149.692 173.916 1 52.75 ? C46 P5S 403 A 1 HETATM 44 O O47 P5S . . . I 6 169.982 146.973 166.066 1 52.75 ? O47 P5S 403 A 1 HETATM 45 C C48 P5S . . . I 6 170.676 150.706 174.744 1 52.75 ? C48 P5S 403 A 1 HETATM 46 C C49 P5S . . . I 6 171.529 151.886 175.194 1 52.75 ? C49 P5S 403 A 1 HETATM 47 C C50 P5S . . . I 6 172.493 151.55 176.324 1 52.75 ? C50 P5S 403 A 1 HETATM 48 C C51 P5S . . . I 6 173.395 152.718 176.703 1 52.75 ? C51 P5S 403 A 1 HETATM 49 C C52 P5S . . . I 6 174.086 152.549 178.05 1 52.75 ? C52 P5S 403 A 1 HETATM 50 C C53 P5S . . . I 6 174.907 153.768 178.453 1 52.75 ? C53 P5S 403 A 1 HETATM 51 C C54 P5S . . . I 6 175.414 153.716 179.888 1 52.75 ? C54 P5S 403 A 1 HETATM 52 C C55 P5S . . . I 6 176.148 154.984 180.309 1 52.75 ? C55 P5S 403 A 1 HETATM 53 C C56 P5S . . . I 6 176.607 154.953 181.759 1 52.75 ? C56 P5S 403 A 1 HETATM 54 O OXT P5S . . . I 6 174.957 150.948 160.626 1 52.75 ? OXT P5S 403 A 1 # _model_server_stats.io_time_ms 31 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 54 #