data_7U1Q
#
_model_server_result.job_id            m4jo1oUUwjWhw16ZIzPYaw 
_model_server_result.datetime_utc      '2024-11-05 16:24:21' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7u1q 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":403}' 
#
_entry.id    7U1Q 
#
_exptl.entry_id    7U1Q 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              792.075 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            O-[(R)-{[(2R)-2,3-bis(octadecanoyloxy)propyl]oxy}(hydroxy)phosphoryl]-L-serine 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7U1Q 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7U1Q 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 I N N 
? 6 M N N 
? 6 O N N 
? 6 R N N 
? 6 U N N 
? 6 CA N N 
#
_pdbx_entity_branch.entity_id    3 
_pdbx_entity_branch.type         oligosaccharide 
#
_pdbx_entity_branch_link.link_id                     1 
_pdbx_entity_branch_link.details                     ? 
_pdbx_entity_branch_link.entity_id                   3 
_pdbx_entity_branch_link.entity_branch_list_num_1    2 
_pdbx_entity_branch_link.entity_branch_list_num_2    1 
_pdbx_entity_branch_link.comp_id_1                   NAG 
_pdbx_entity_branch_link.comp_id_2                   NAG 
_pdbx_entity_branch_link.atom_id_1                   C1 
_pdbx_entity_branch_link.leaving_atom_id_1           O1 
_pdbx_entity_branch_link.atom_stereo_config_1        . 
_pdbx_entity_branch_link.atom_id_2                   O4 
_pdbx_entity_branch_link.leaving_atom_id_2           HO4 
_pdbx_entity_branch_link.atom_stereo_config_2        . 
_pdbx_entity_branch_link.value_order                 sing 
#
loop_
_pdbx_branch_scheme.entity_id
_pdbx_branch_scheme.hetero
_pdbx_branch_scheme.asym_id
_pdbx_branch_scheme.mon_id
_pdbx_branch_scheme.num
_pdbx_branch_scheme.pdb_asym_id
_pdbx_branch_scheme.pdb_seq_num
_pdbx_branch_scheme.pdb_mon_id
_pdbx_branch_scheme.auth_asym_id
_pdbx_branch_scheme.auth_seq_num
_pdbx_branch_scheme.auth_mon_id
3 n F NAG 1 F 1 NAG E 2101 NAG 
3 n F NAG 2 F 2 NAG E 2102 NAG 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 110 A CYS 110 1_555 A SG CYS 142 A CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf2 B SG CYS 110 B CYS 110 1_555 B SG CYS 142 B CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf3 C SG CYS 110 C CYS 110 1_555 C SG CYS 142 C CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf4 D SG CYS 110 D CYS 110 1_555 D SG CYS 142 D CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf5 E SG CYS 6 E CYS 6 1_555 E SG CYS 26 E CYS 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
covale ? covale1 E ND2 ASN 10 E ASN 10 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? 
covale ? covale2 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? 
metalc ? metalc1 A O THR 130 A THR 130 1_555 H K K . A K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.686 ? 
metalc ? metalc2 A OG1 THR 130 A THR 130 1_555 H K K . A K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.2 ? 
metalc ? metalc3 H K K . A K 402 1_555 B O THR 130 B THR 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.728 ? 
metalc ? metalc4 H K K . A K 402 1_555 B OG1 THR 130 B THR 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.851 ? 
metalc ? metalc5 H K K . A K 402 1_555 C O THR 130 C THR 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.7 ? 
metalc ? metalc6 H K K . A K 402 1_555 C OG1 THR 130 C THR 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.247 ? 
metalc ? metalc7 H K K . A K 402 1_555 D O THR 130 D THR 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.731 ? 
metalc ? metalc8 H K K . A K 402 1_555 D OG1 THR 130 D THR 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.232 ? 
#
_chem_comp.formula           'C42 H82 N O10 P' 
_chem_comp.formula_weight    792.075 
_chem_comp.id                P5S 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              O-[(R)-{[(2R)-2,3-bis(octadecanoyloxy)propyl]oxy}(hydroxy)phosphoryl]-L-serine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'phosphatidyl serine' 
#
_atom_sites.entry_id                     7U1Q 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 4 ATP A 1 401 401 ATP ATP . 
H 5 K A 1 402 504 K K . 
I 6 P5S A 1 403 508 P5S P5S . 
J 7 POV A 1 404 505 POV POV . 
K 4 ATP B 1 401 401 ATP ATP . 
L 7 POV B 1 402 505 POV POV . 
M 6 P5S B 1 403 506 P5S P5S . 
N 4 ATP C 1 401 401 ATP ATP . 
O 6 P5S C 1 402 506 P5S P5S . 
P 7 POV C 1 403 505 POV POV . 
Q 4 ATP D 1 401 401 ATP ATP . 
R 6 P5S D 1 402 505 P5S P5S . 
S 7 POV D 1 403 506 POV POV . 
T 8 PTY E 1 1601 506 PTY PTY . 
U 6 P5S E 1 1602 507 P5S P5S . 
V 9 BJX E 1 1603 2001 BJX BJX . 
W 4 ATP E 1 1604 2002 ATP ATP . 
X 8 PTY E 1 1605 2011 PTY PTY . 
Y 7 POV E 1 1606 2003 POV POV . 
Z 8 PTY E 1 1607 2009 PTY PTY . 
AA 8 PTY E 1 1608 2005 PTY PTY . 
BA 8 PTY E 1 1609 2010 PTY PTY . 
CA 6 P5S E 1 1610 2007 P5S P5S . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C P5S . . . M 6 160.302 172.691 158.072 1 58.19 ? C P5S 403 B 1 
HETATM 2 N N P5S . . . M 6 160.064 174.143 156.005 1 58.19 ? N P5S 403 B 1 
HETATM 3 O O P5S . . . M 6 160.824 172.522 159.192 1 58.19 ? O P5S 403 B 1 
HETATM 4 C C1 P5S . . . M 6 166.327 175.721 161.889 1 58.19 ? C1 P5S 403 B 1 
HETATM 5 C C2 P5S . . . M 6 164.933 176.308 161.88 1 58.19 ? C2 P5S 403 B 1 
HETATM 6 C C3 P5S . . . M 6 164.585 177.189 160.691 1 58.19 ? C3 P5S 403 B 1 
HETATM 7 C CA P5S . . . M 6 160.836 173.857 157.199 1 58.19 ? CA P5S 403 B 1 
HETATM 8 C CB P5S . . . M 6 160.915 175.103 158.072 1 58.19 ? CB P5S 403 B 1 
HETATM 9 O OG P5S . . . M 6 162.251 175.514 158.285 1 58.19 ? OG P5S 403 B 1 
HETATM 10 P P12 P5S . . . M 6 163.016 175.259 159.707 1 58.19 ? P12 P5S 403 B 1 
HETATM 11 O O13 P5S . . . M 6 163.797 173.985 159.698 1 58.19 ? O13 P5S 403 B 1 
HETATM 12 O O15 P5S . . . M 6 162.046 175.546 160.817 1 58.19 ? O15 P5S 403 B 1 
HETATM 13 O O16 P5S . . . M 6 164.154 176.439 159.582 1 58.19 ? O16 P5S 403 B 1 
HETATM 14 C C17 P5S . . . M 6 167.084 173.476 161.772 1 58.19 ? C17 P5S 403 B 1 
HETATM 15 O O18 P5S . . . M 6 167.538 172.594 161.087 1 58.19 ? O18 P5S 403 B 1 
HETATM 16 O O19 P5S . . . M 6 166.315 174.438 161.274 1 58.19 ? O19 P5S 403 B 1 
HETATM 17 C C20 P5S . . . M 6 167.291 173.596 163.254 1 58.19 ? C20 P5S 403 B 1 
HETATM 18 C C21 P5S . . . M 6 166.975 172.32 164.012 1 58.19 ? C21 P5S 403 B 1 
HETATM 19 C C22 P5S . . . M 6 166.987 172.529 165.523 1 58.19 ? C22 P5S 403 B 1 
HETATM 20 C C23 P5S . . . M 6 166.686 171.248 166.291 1 58.19 ? C23 P5S 403 B 1 
HETATM 21 C C24 P5S . . . M 6 167.186 171.268 167.73 1 58.19 ? C24 P5S 403 B 1 
HETATM 22 C C25 P5S . . . M 6 166.419 170.303 168.627 1 58.19 ? C25 P5S 403 B 1 
HETATM 23 C C26 P5S . . . M 6 166.738 170.429 170.112 1 58.19 ? C26 P5S 403 B 1 
HETATM 24 C C27 P5S . . . M 6 165.51 170.174 170.974 1 58.19 ? C27 P5S 403 B 1 
HETATM 25 C C28 P5S . . . M 6 165.734 170.224 172.478 1 58.19 ? C28 P5S 403 B 1 
HETATM 26 C C29 P5S . . . M 6 165.56 171.634 173.028 1 58.19 ? C29 P5S 403 B 1 
HETATM 27 C C30 P5S . . . M 6 164.151 171.922 173.525 1 58.19 ? C30 P5S 403 B 1 
HETATM 28 C C31 P5S . . . M 6 163.923 173.403 173.802 1 58.19 ? C31 P5S 403 B 1 
HETATM 29 C C32 P5S . . . M 6 162.489 173.871 173.583 1 58.19 ? C32 P5S 403 B 1 
HETATM 30 C C33 P5S . . . M 6 161.582 173.635 174.785 1 58.19 ? C33 P5S 403 B 1 
HETATM 31 C C34 P5S . . . M 6 160.707 174.834 175.124 1 58.19 ? C34 P5S 403 B 1 
HETATM 32 C C35 P5S . . . M 6 161.129 175.536 176.409 1 58.19 ? C35 P5S 403 B 1 
HETATM 33 C C36 P5S . . . M 6 160.334 176.805 176.682 1 58.19 ? C36 P5S 403 B 1 
HETATM 34 O O37 P5S . . . M 6 164.703 176.973 163.134 1 58.19 ? O37 P5S 403 B 1 
HETATM 35 C C38 P5S . . . M 6 165.59 177.829 163.64 1 58.19 ? C38 P5S 403 B 1 
HETATM 36 C C39 P5S . . . M 6 165.674 177.684 165.135 1 58.19 ? C39 P5S 403 B 1 
HETATM 37 C C40 P5S . . . M 6 166.467 176.469 165.591 1 58.19 ? C40 P5S 403 B 1 
HETATM 38 C C41 P5S . . . M 6 166.082 176.047 167.002 1 58.19 ? C41 P5S 403 B 1 
HETATM 39 C C42 P5S . . . M 6 166.867 176.821 168.054 1 58.19 ? C42 P5S 403 B 1 
HETATM 40 C C43 P5S . . . M 6 166.002 177.349 169.191 1 58.19 ? C43 P5S 403 B 1 
HETATM 41 C C44 P5S . . . M 6 166.371 178.774 169.587 1 58.19 ? C44 P5S 403 B 1 
HETATM 42 C C45 P5S . . . M 6 165.278 179.506 170.355 1 58.19 ? C45 P5S 403 B 1 
HETATM 43 C C46 P5S . . . M 6 164.826 180.788 169.667 1 58.19 ? C46 P5S 403 B 1 
HETATM 44 O O47 P5S . . . M 6 166.234 178.617 162.991 1 58.19 ? O47 P5S 403 B 1 
HETATM 45 C C48 P5S . . . M 6 163.881 181.633 170.512 1 58.19 ? C48 P5S 403 B 1 
HETATM 46 C C49 P5S . . . M 6 163.333 182.845 169.768 1 58.19 ? C49 P5S 403 B 1 
HETATM 47 C C50 P5S . . . M 6 162.368 182.485 168.647 1 58.19 ? C50 P5S 403 B 1 
HETATM 48 C C51 P5S . . . M 6 161.943 183.684 167.807 1 58.19 ? C51 P5S 403 B 1 
HETATM 49 C C52 P5S . . . M 6 161.111 183.297 166.592 1 58.19 ? C52 P5S 403 B 1 
HETATM 50 C C53 P5S . . . M 6 161.041 184.389 165.531 1 58.19 ? C53 P5S 403 B 1 
HETATM 51 C C54 P5S . . . M 6 160.582 183.873 164.174 1 58.19 ? C54 P5S 403 B 1 
HETATM 52 C C55 P5S . . . M 6 161.427 182.714 163.659 1 58.19 ? C55 P5S 403 B 1 
HETATM 53 C C56 P5S . . . M 6 160.985 182.222 162.289 1 58.19 ? C56 P5S 403 B 1 
HETATM 54 O OXT P5S . . . M 6 159.382 172.01 157.573 1 58.19 ? OXT P5S 403 B 1 
#
_model_server_stats.io_time_ms              31 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    27 
_model_server_stats.query_time_ms           313 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           54 
#