data_7U1Q # _model_server_result.job_id zB940FPhRXOYQizdVaqh7Q _model_server_result.datetime_utc '2024-11-05 16:21:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7u1q # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"S","auth_seq_id":403}' # _entry.id 7U1Q # _exptl.entry_id 7U1Q _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 760.076 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7U1Q _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7U1Q _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 J N N ? 7 L N N ? 7 P N N ? 7 S N N ? 7 Y N N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 3 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n F NAG 1 F 1 NAG E 2101 NAG 3 n F NAG 2 F 2 NAG E 2102 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 110 A CYS 110 1_555 A SG CYS 142 A CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 B SG CYS 110 B CYS 110 1_555 B SG CYS 142 B CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf3 C SG CYS 110 C CYS 110 1_555 C SG CYS 142 C CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf4 D SG CYS 110 D CYS 110 1_555 D SG CYS 142 D CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf5 E SG CYS 6 E CYS 6 1_555 E SG CYS 26 E CYS 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? covale ? covale1 E ND2 ASN 10 E ASN 10 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale2 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? metalc ? metalc1 A O THR 130 A THR 130 1_555 H K K . A K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.686 ? metalc ? metalc2 A OG1 THR 130 A THR 130 1_555 H K K . A K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.2 ? metalc ? metalc3 H K K . A K 402 1_555 B O THR 130 B THR 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.728 ? metalc ? metalc4 H K K . A K 402 1_555 B OG1 THR 130 B THR 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.851 ? metalc ? metalc5 H K K . A K 402 1_555 C O THR 130 C THR 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.7 ? metalc ? metalc6 H K K . A K 402 1_555 C OG1 THR 130 C THR 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.247 ? metalc ? metalc7 H K K . A K 402 1_555 D O THR 130 D THR 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.731 ? metalc ? metalc8 H K K . A K 402 1_555 D OG1 THR 130 D THR 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.232 ? # _chem_comp.formula 'C42 H82 N O8 P' _chem_comp.formula_weight 760.076 _chem_comp.id POV _chem_comp.mon_nstd_flag . _chem_comp.name '(2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms POPC # _atom_sites.entry_id 7U1Q _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 ATP A 1 401 401 ATP ATP . H 5 K A 1 402 504 K K . I 6 P5S A 1 403 508 P5S P5S . J 7 POV A 1 404 505 POV POV . K 4 ATP B 1 401 401 ATP ATP . L 7 POV B 1 402 505 POV POV . M 6 P5S B 1 403 506 P5S P5S . N 4 ATP C 1 401 401 ATP ATP . O 6 P5S C 1 402 506 P5S P5S . P 7 POV C 1 403 505 POV POV . Q 4 ATP D 1 401 401 ATP ATP . R 6 P5S D 1 402 505 P5S P5S . S 7 POV D 1 403 506 POV POV . T 8 PTY E 1 1601 506 PTY PTY . U 6 P5S E 1 1602 507 P5S P5S . V 9 BJX E 1 1603 2001 BJX BJX . W 4 ATP E 1 1604 2002 ATP ATP . X 8 PTY E 1 1605 2011 PTY PTY . Y 7 POV E 1 1606 2003 POV POV . Z 8 PTY E 1 1607 2009 PTY PTY . AA 8 PTY E 1 1608 2005 PTY PTY . BA 8 PTY E 1 1609 2010 PTY PTY . CA 6 P5S E 1 1610 2007 P5S P5S . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N POV . . . S 7 163.022 136.588 202.557 1 43.63 ? N POV 403 D 1 HETATM 2 P P POV . . . S 7 165.513 135.862 198.422 1 43.63 ? P POV 403 D 1 HETATM 3 C C1 POV . . . S 7 163.713 135.4 196.536 1 43.63 ? C1 POV 403 D 1 HETATM 4 C C2 POV . . . S 7 163.166 134.075 195.993 1 43.63 ? C2 POV 403 D 1 HETATM 5 C C3 POV . . . S 7 164.253 133.081 195.66 1 43.63 ? C3 POV 403 D 1 HETATM 6 C C210 POV . . . S 7 154.377 130.512 190.953 1 43.63 ? C210 POV 403 D 1 HETATM 7 C C11 POV . . . S 7 164.861 136.875 200.757 1 43.63 ? C11 POV 403 D 1 HETATM 8 O O11 POV . . . S 7 164.155 135.173 197.854 1 43.63 ? O11 POV 403 D 1 HETATM 9 C C12 POV . . . S 7 164.485 136.577 202.191 1 43.63 ? C12 POV 403 D 1 HETATM 10 O O12 POV . . . S 7 165.15 135.706 200.029 1 43.63 ? O12 POV 403 D 1 HETATM 11 C C13 POV . . . S 7 162.188 135.969 201.49 1 43.63 ? C13 POV 403 D 1 HETATM 12 O O13 POV . . . S 7 166.64 134.928 198.099 1 43.63 ? O13 POV 403 D 1 HETATM 13 C C14 POV . . . S 7 162.62 138.013 202.715 1 43.63 ? C14 POV 403 D 1 HETATM 14 O O14 POV . . . S 7 165.587 137.313 198.071 1 43.63 ? O14 POV 403 D 1 HETATM 15 C C15 POV . . . S 7 162.76 135.889 203.846 1 43.63 ? C15 POV 403 D 1 HETATM 16 C C21 POV . . . S 7 161.229 133.61 194.701 1 43.63 ? C21 POV 403 D 1 HETATM 17 O O21 POV . . . S 7 162.39 134.249 194.807 1 43.63 ? O21 POV 403 D 1 HETATM 18 C C22 POV . . . S 7 160.903 133.314 193.263 1 43.63 ? C22 POV 403 D 1 HETATM 19 O O22 POV . . . S 7 160.546 133.314 195.649 1 43.63 ? O22 POV 403 D 1 HETATM 20 C C23 POV . . . S 7 160.427 134.513 192.458 1 43.63 ? C23 POV 403 D 1 HETATM 21 C C24 POV . . . S 7 158.93 134.445 192.189 1 43.63 ? C24 POV 403 D 1 HETATM 22 C C25 POV . . . S 7 158.098 134.493 193.464 1 43.63 ? C25 POV 403 D 1 HETATM 23 C C26 POV . . . S 7 156.603 134.325 193.223 1 43.63 ? C26 POV 403 D 1 HETATM 24 C C27 POV . . . S 7 156.171 132.871 193.081 1 43.63 ? C27 POV 403 D 1 HETATM 25 C C28 POV . . . S 7 155.8 132.501 191.645 1 43.63 ? C28 POV 403 D 1 HETATM 26 C C29 POV . . . S 7 155.466 131.049 191.501 1 43.63 ? C29 POV 403 D 1 HETATM 27 C C31 POV . . . S 7 165.081 133.486 193.479 1 43.63 ? C31 POV 403 D 1 HETATM 28 O O31 POV . . . S 7 164.232 132.83 194.26 1 43.63 ? O31 POV 403 D 1 HETATM 29 C C32 POV . . . S 7 165.47 132.643 192.299 1 43.63 ? C32 POV 403 D 1 HETATM 30 O O32 POV . . . S 7 165.471 134.605 193.705 1 43.63 ? O32 POV 403 D 1 HETATM 31 C C33 POV . . . S 7 166.557 133.239 191.424 1 43.63 ? C33 POV 403 D 1 HETATM 32 C C34 POV . . . S 7 165.968 134.227 190.427 1 43.63 ? C34 POV 403 D 1 HETATM 33 C C35 POV . . . S 7 165.808 133.664 189.022 1 43.63 ? C35 POV 403 D 1 HETATM 34 C C36 POV . . . S 7 165.191 134.671 188.059 1 43.63 ? C36 POV 403 D 1 HETATM 35 C C37 POV . . . S 7 165.286 134.262 186.595 1 43.63 ? C37 POV 403 D 1 HETATM 36 C C38 POV . . . S 7 166.722 134.237 186.088 1 43.63 ? C38 POV 403 D 1 # _model_server_stats.io_time_ms 33 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 36 #