data_7U1S # _model_server_result.job_id p6Ig5a6ZomztYiJ15hlVHQ _model_server_result.datetime_utc '2024-12-24 01:31:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7u1s # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":401}' # _entry.id 7U1S # _exptl.entry_id 7U1S _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7U1S _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7U1S _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 K N N ? 4 O N N ? 4 R N N ? 4 DA N N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 3 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n F NAG 1 F 1 NAG E 2101 NAG 3 n F NAG 2 F 2 NAG E 2102 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 110 A CYS 110 1_555 A SG CYS 142 A CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf2 B SG CYS 110 B CYS 110 1_555 B SG CYS 142 B CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf3 C SG CYS 110 C CYS 110 1_555 C SG CYS 142 C CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf4 D SG CYS 110 D CYS 110 1_555 D SG CYS 142 D CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf5 E SG CYS 6 E CYS 6 1_555 E SG CYS 26 E CYS 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? covale ? covale1 E ND2 ASN 10 E ASN 10 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale2 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? metalc ? metalc1 A O THR 130 A THR 130 1_555 H K K . A K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.708 ? metalc ? metalc2 A O ILE 131 A ILE 131 1_555 H K K . A K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.279 ? metalc ? metalc3 H K K . A K 402 1_555 B O THR 130 B THR 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.741 ? metalc ? metalc4 H K K . A K 402 1_555 B O ILE 131 B ILE 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.987 ? metalc ? metalc5 H K K . A K 402 1_555 C O THR 130 C THR 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.694 ? metalc ? metalc6 H K K . A K 402 1_555 C O ILE 131 C ILE 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.081 ? metalc ? metalc7 H K K . A K 402 1_555 D O THR 130 D THR 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.766 ? metalc ? metalc8 H K K . A K 402 1_555 D O ILE 131 D ILE 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.154 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 7U1S _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 ATP A 1 401 401 ATP ATP . H 5 K A 1 402 503 K K . I 6 POV A 1 403 505 POV POV . J 7 P5S A 1 404 508 P5S P5S . K 4 ATP A 1 405 401 ATP ATP . L 7 P5S A 1 406 507 P5S P5S . M 6 POV B 1 401 505 POV POV . N 7 P5S B 1 402 506 P5S P5S . O 4 ATP C 1 401 401 ATP ATP . P 6 POV C 1 402 505 POV POV . Q 7 P5S C 1 403 506 P5S P5S . R 4 ATP C 1 404 401 ATP ATP . S 6 POV D 1 401 506 POV POV . T 7 P5S D 1 402 505 P5S P5S . U 8 PTY E 1 1601 506 PTY PTY . V 9 BJX E 1 1602 2001 BJX BJX . W 8 PTY E 1 1603 2009 PTY PTY . X 6 POV E 1 1604 2007 POV POV . Y 8 PTY E 1 1605 2003 PTY PTY . Z 8 PTY E 1 1606 2004 PTY PTY . AA 8 PTY E 1 1607 2005 PTY PTY . BA 8 PTY E 1 1608 2008 PTY PTY . CA 7 P5S E 1 1609 2006 P5S P5S . DA 4 ATP E 1 1610 2002 ATP ATP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . O 4 131.601 178.588 142.454 1 44.52 ? PG ATP 401 C 1 HETATM 2 O O1G ATP . . . O 4 130.191 179.044 142.294 1 44.52 ? O1G ATP 401 C 1 HETATM 3 O O2G ATP . . . O 4 131.752 177.064 142.514 1 44.52 ? O2G ATP 401 C 1 HETATM 4 O O3G ATP . . . O 4 132.316 179.209 143.659 1 44.52 ? O3G ATP 401 C 1 HETATM 5 P PB ATP . . . O 4 132.953 180.348 140.442 1 44.52 ? PB ATP 401 C 1 HETATM 6 O O1B ATP . . . O 4 131.811 181.144 139.951 1 44.52 ? O1B ATP 401 C 1 HETATM 7 O O2B ATP . . . O 4 133.922 181.078 141.372 1 44.52 ? O2B ATP 401 C 1 HETATM 8 O O3B ATP . . . O 4 132.481 179.029 141.195 1 44.52 ? O3B ATP 401 C 1 HETATM 9 P PA ATP . . . O 4 135.301 179.88 138.709 1 44.52 ? PA ATP 401 C 1 HETATM 10 O O1A ATP . . . O 4 135.386 179.546 137.272 1 44.52 ? O1A ATP 401 C 1 HETATM 11 O O2A ATP . . . O 4 135.781 181.284 139.074 1 44.52 ? O2A ATP 401 C 1 HETATM 12 O O3A ATP . . . O 4 133.814 179.743 139.249 1 44.52 ? O3A ATP 401 C 1 HETATM 13 O O5' ATP . . . O 4 136.09 178.838 139.596 1 44.52 ? O5' ATP 401 C 1 HETATM 14 C C5' ATP . . . O 4 135.417 177.722 140.216 1 44.52 ? C5' ATP 401 C 1 HETATM 15 C C4' ATP . . . O 4 136.372 177.028 141.154 1 44.52 ? C4' ATP 401 C 1 HETATM 16 O O4' ATP . . . O 4 137.55 177.845 141.337 1 44.52 ? O4' ATP 401 C 1 HETATM 17 C C3' ATP . . . O 4 135.827 176.761 142.555 1 44.52 ? C3' ATP 401 C 1 HETATM 18 O O3' ATP . . . O 4 136.357 175.554 143.09 1 44.52 ? O3' ATP 401 C 1 HETATM 19 C C2' ATP . . . O 4 136.302 177.988 143.336 1 44.52 ? C2' ATP 401 C 1 HETATM 20 O O2' ATP . . . O 4 136.456 177.703 144.722 1 44.52 ? O2' ATP 401 C 1 HETATM 21 C C1' ATP . . . O 4 137.664 178.245 142.691 1 44.52 ? C1' ATP 401 C 1 HETATM 22 N N9 ATP . . . O 4 138.088 179.64 142.723 1 44.52 ? N9 ATP 401 C 1 HETATM 23 C C8 ATP . . . O 4 137.806 180.612 141.799 1 44.52 ? C8 ATP 401 C 1 HETATM 24 N N7 ATP . . . O 4 138.321 181.784 142.08 1 44.52 ? N7 ATP 401 C 1 HETATM 25 C C5 ATP . . . O 4 138.992 181.569 143.274 1 44.52 ? C5 ATP 401 C 1 HETATM 26 C C6 ATP . . . O 4 139.75 182.416 144.104 1 44.52 ? C6 ATP 401 C 1 HETATM 27 N N6 ATP . . . O 4 139.969 183.71 143.846 1 44.52 ? N6 ATP 401 C 1 HETATM 28 N N1 ATP . . . O 4 140.284 181.885 145.226 1 44.52 ? N1 ATP 401 C 1 HETATM 29 C C2 ATP . . . O 4 140.069 180.594 145.491 1 44.52 ? C2 ATP 401 C 1 HETATM 30 N N3 ATP . . . O 4 139.374 179.699 144.785 1 44.52 ? N3 ATP 401 C 1 HETATM 31 C C4 ATP . . . O 4 138.858 180.251 143.682 1 44.52 ? C4 ATP 401 C 1 # _model_server_stats.io_time_ms 29 _model_server_stats.parse_time_ms 29 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #