data_7U1U # _model_server_result.job_id GRpoRXkbunEGhyhyqv2fyA _model_server_result.datetime_utc '2024-11-05 07:58:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7u1u # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":702}' # _entry.id 7U1U # _exptl.entry_id 7U1U _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7U1U _cell.length_a 177.953 _cell.length_b 177.953 _cell.length_c 184.727 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7U1U _symmetry.cell_setting ? _symmetry.Int_Tables_number 181 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 64 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_666 -y+1,-x+1,-z+4/3 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 88.9765 154.111819 246.302667 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C PRO 254 A PRO 339 1_555 A N CSD 255 A CSD 340 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale2 A C CSD 255 A CSD 340 1_555 A N ASP 256 A ASP 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? metalc ? metalc1 A OD1 ASP 453 A ASP 538 1_555 B MG MG . A MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? metalc ? metalc2 A OD1 ASN 480 A ASN 565 1_555 B MG MG . A MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.442 ? metalc ? metalc3 B MG MG . A MG 701 1_555 D O1A TPP . A TPP 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.222 ? metalc ? metalc4 B MG MG . A MG 701 1_555 D O3B TPP . A TPP 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 98 n n PA O2A FAD sing 99 n n PA O5B FAD sing 100 n n PA O3P FAD sing 101 n n O2A HOA2 FAD sing 102 n n O5B C5B FAD sing 103 n n C5B C4B FAD sing 104 n n C5B H51A FAD sing 105 n n C5B H52A FAD sing 106 n n C4B O4B FAD sing 107 n n C4B C3B FAD sing 108 n n C4B H4B FAD sing 109 n n O4B C1B FAD sing 110 n n C3B O3B FAD sing 111 n n C3B C2B FAD sing 112 n n C3B H3B FAD sing 113 n n O3B HO3A FAD sing 114 n n C2B O2B FAD sing 115 n n C2B C1B FAD sing 116 n n C2B H2B FAD sing 117 n n O2B HO2A FAD sing 118 n n C1B N9A FAD sing 119 n n C1B H1B FAD sing 120 n n N9A C8A FAD sing 121 n y N9A C4A FAD sing 122 n y C8A N7A FAD doub 123 n y C8A H8A FAD sing 124 n n N7A C5A FAD sing 125 n y C5A C6A FAD sing 126 n y C5A C4A FAD doub 127 n y C6A N6A FAD sing 128 n n C6A N1A FAD doub 129 n y N6A H61A FAD sing 130 n n N6A H62A FAD sing 131 n n N1A C2A FAD sing 132 n y C2A N3A FAD doub 133 n y C2A H2A FAD sing 134 n n N3A C4A FAD sing 135 n y N1 C2 FAD sing 136 n n N1 C10 FAD doub 137 n n C2 O2 FAD doub 138 n n C2 N3 FAD sing 139 n n N3 C4 FAD sing 140 n n N3 HN3 FAD sing 141 n n C4 O4 FAD doub 142 n n C4 C4X FAD sing 143 n n C4X N5 FAD doub 144 n n C4X C10 FAD sing 145 n n N5 C5X FAD sing 146 n n C5X C6 FAD doub 147 n y C5X C9A FAD sing 148 n y C6 C7 FAD sing 149 n y C6 H6 FAD sing 150 n n C7 C7M FAD sing 151 n n C7 C8 FAD doub 152 n y C7M HM71 FAD sing 153 n n C7M HM72 FAD sing 154 n n C7M HM73 FAD sing 155 n n C8 C8M FAD sing 156 n n C8 C9 FAD sing 157 n y C8M HM81 FAD sing 158 n n C8M HM82 FAD sing 159 n n C8M HM83 FAD sing 160 n n C9 C9A FAD doub 161 n y C9 H9 FAD sing 162 n n C9A N10 FAD sing 163 n n N10 C10 FAD sing 164 n n N10 C1' FAD sing 165 n n C1' C2' FAD sing 166 n n C1' "H1'1" FAD sing 167 n n C1' "H1'2" FAD sing 168 n n C2' O2' FAD sing 169 n n C2' C3' FAD sing 170 n n C2' H2' FAD sing 171 n n O2' HO2' FAD sing 172 n n C3' O3' FAD sing 173 n n C3' C4' FAD sing 174 n n C3' H3' FAD sing 175 n n O3' HO3' FAD sing 176 n n C4' O4' FAD sing 177 n n C4' C5' FAD sing 178 n n C4' H4' FAD sing 179 n n O4' HO4' FAD sing 180 n n C5' O5' FAD sing 181 n n C5' "H5'1" FAD sing 182 n n C5' "H5'2" FAD sing 183 n n O5' P FAD sing 184 n n P O1P FAD doub 185 n n P O2P FAD sing 186 n n P O3P FAD sing 187 n n O2P HOP2 FAD sing 188 n n # _atom_sites.entry_id 7U1U _atom_sites.fract_transf_matrix[1][1] 0.005619 _atom_sites.fract_transf_matrix[1][2] 0.003244 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006489 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005413 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 701 699 MG MG . C 3 FAD A 1 702 701 FAD FAD . D 4 TPP A 1 703 801 TPP TPP . E 5 NHE A 1 704 901 NHE NHE . F 6 SO4 A 1 705 1001 SO4 SO4 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . C 3 58 67.191 101.115 1 62.17 ? PA FAD 702 A 1 HETATM 2 O O1A FAD . . . C 3 58.162 65.752 101.62 1 59.67 ? O1A FAD 702 A 1 HETATM 3 O O2A FAD . . . C 3 57.841 68.126 102.29 1 74.57 ? O2A FAD 702 A 1 HETATM 4 O O5B FAD . . . C 3 56.694 67.261 100.177 1 67.35 ? O5B FAD 702 A 1 HETATM 5 C C5B FAD . . . C 3 55.388 67.228 100.799 1 71.59 ? C5B FAD 702 A 1 HETATM 6 C C4B FAD . . . C 3 54.393 67.63 99.721 1 60.94 ? C4B FAD 702 A 1 HETATM 7 O O4B FAD . . . C 3 54.049 66.488 98.928 1 69.98 ? O4B FAD 702 A 1 HETATM 8 C C3B FAD . . . C 3 53.125 68.112 100.344 1 69.43 ? C3B FAD 702 A 1 HETATM 9 O O3B FAD . . . C 3 52.591 69.19 99.568 1 68.41 ? O3B FAD 702 A 1 HETATM 10 C C2B FAD . . . C 3 52.234 66.945 100.276 1 62.76 ? C2B FAD 702 A 1 HETATM 11 O O2B FAD . . . C 3 50.86 67.366 100.295 1 72.07 ? O2B FAD 702 A 1 HETATM 12 C C1B FAD . . . C 3 52.606 66.394 98.972 1 75.96 ? C1B FAD 702 A 1 HETATM 13 N N9A FAD . . . C 3 52.179 65.065 98.798 1 70.42 ? N9A FAD 702 A 1 HETATM 14 C C8A FAD . . . C 3 52.417 64.015 99.571 1 67.42 ? C8A FAD 702 A 1 HETATM 15 N N7A FAD . . . C 3 51.834 62.934 99.039 1 61.2 ? N7A FAD 702 A 1 HETATM 16 C C5A FAD . . . C 3 51.201 63.302 97.882 1 62.35 ? C5A FAD 702 A 1 HETATM 17 C C6A FAD . . . C 3 50.427 62.662 96.876 1 63.08 ? C6A FAD 702 A 1 HETATM 18 N N6A FAD . . . C 3 50.164 61.302 96.965 1 63.4 ? N6A FAD 702 A 1 HETATM 19 N N1A FAD . . . C 3 49.949 63.383 95.838 1 63.39 ? N1A FAD 702 A 1 HETATM 20 C C2A FAD . . . C 3 50.196 64.666 95.751 1 71.33 ? C2A FAD 702 A 1 HETATM 21 N N3A FAD . . . C 3 50.918 65.318 96.669 1 73.61 ? N3A FAD 702 A 1 HETATM 22 C C4A FAD . . . C 3 51.426 64.669 97.73 1 63.76 ? C4A FAD 702 A 1 HETATM 23 N N1 FAD . . . C 3 65.475 70.793 99.662 1 72.62 ? N1 FAD 702 A 1 HETATM 24 C C2 FAD . . . C 3 65.672 70.983 98.264 1 68.77 ? C2 FAD 702 A 1 HETATM 25 O O2 FAD . . . C 3 64.863 70.536 97.476 1 68.77 ? O2 FAD 702 A 1 HETATM 26 N N3 FAD . . . C 3 66.769 71.674 97.803 1 75.67 ? N3 FAD 702 A 1 HETATM 27 C C4 FAD . . . C 3 67.692 72.186 98.693 1 69.01 ? C4 FAD 702 A 1 HETATM 28 O O4 FAD . . . C 3 68.653 72.794 98.263 1 70.92 ? O4 FAD 702 A 1 HETATM 29 C C4X FAD . . . C 3 67.508 71.996 100.189 1 70.99 ? C4X FAD 702 A 1 HETATM 30 N N5 FAD . . . C 3 68.412 72.5 101.122 1 76.64 ? N5 FAD 702 A 1 HETATM 31 C C5X FAD . . . C 3 68.409 71.966 102.378 1 73.29 ? C5X FAD 702 A 1 HETATM 32 C C6 FAD . . . C 3 69.525 72.125 103.215 1 75.32 ? C6 FAD 702 A 1 HETATM 33 C C7 FAD . . . C 3 69.526 71.573 104.503 1 71.31 ? C7 FAD 702 A 1 HETATM 34 C C7M FAD . . . C 3 70.754 71.748 105.422 1 53.08 ? C7M FAD 702 A 1 HETATM 35 C C8 FAD . . . C 3 68.412 70.862 104.957 1 72.35 ? C8 FAD 702 A 1 HETATM 36 C C8M FAD . . . C 3 68.407 70.251 106.365 1 56.54 ? C8M FAD 702 A 1 HETATM 37 C C9 FAD . . . C 3 67.301 70.703 104.123 1 91.84 ? C9 FAD 702 A 1 HETATM 38 C C9A FAD . . . C 3 67.3 71.259 102.826 1 80 ? C9A FAD 702 A 1 HETATM 39 N N10 FAD . . . C 3 66.215 71.113 101.99 1 76.36 ? N10 FAD 702 A 1 HETATM 40 C C10 FAD . . . C 3 66.403 71.302 100.628 1 72.71 ? C10 FAD 702 A 1 HETATM 41 C C1' FAD . . . C 3 65.06 70.449 102.454 1 80.5 ? C1' FAD 702 A 1 HETATM 42 C C2' FAD . . . C 3 63.842 71.408 102.458 1 72.92 ? C2' FAD 702 A 1 HETATM 43 O O2' FAD . . . C 3 63.761 72.084 103.702 1 76.68 ? O2' FAD 702 A 1 HETATM 44 C C3' FAD . . . C 3 62.532 70.581 102.216 1 74.09 ? C3' FAD 702 A 1 HETATM 45 O O3' FAD . . . C 3 62.637 69.387 102.859 1 69.32 ? O3' FAD 702 A 1 HETATM 46 C C4' FAD . . . C 3 62.372 70.331 100.746 1 68.35 ? C4' FAD 702 A 1 HETATM 47 O O4' FAD . . . C 3 62.083 71.546 100.052 1 79.64 ? O4' FAD 702 A 1 HETATM 48 C C5' FAD . . . C 3 61.235 69.376 100.574 1 77.83 ? C5' FAD 702 A 1 HETATM 49 O O5' FAD . . . C 3 60.48 69.691 99.432 1 68.25 ? O5' FAD 702 A 1 HETATM 50 P P FAD . . . C 3 59.271 68.675 99.135 1 61.09 ? P FAD 702 A 1 HETATM 51 O O1P FAD . . . C 3 57.956 69.463 99.094 1 76.5 ? O1P FAD 702 A 1 HETATM 52 O O2P FAD . . . C 3 59.507 67.987 97.798 1 64.44 ? O2P FAD 702 A 1 HETATM 53 O O3P FAD . . . C 3 59.251 67.586 100.266 1 82.39 ? O3P FAD 702 A 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 53 #