data_7U24
#
_model_server_result.job_id            qBVoTwVX793Jqx1RD6vU2g 
_model_server_result.datetime_utc      '2024-11-05 19:51:15' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7u24 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"DA","auth_seq_id":2008}' 
#
_entry.id    7U24 
#
_exptl.entry_id    7U24 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              792.075 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            O-[(R)-{[(2R)-2,3-bis(octadecanoyloxy)propyl]oxy}(hydroxy)phosphoryl]-L-serine 
_entity.pdbx_number_of_molecules    9 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7U24 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7U24 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 I N N 
? 6 J N N 
? 6 M N N 
? 6 N N N 
? 6 Q N N 
? 6 R N N 
? 6 U N N 
? 6 V N N 
? 6 DA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 110 A CYS 110 1_555 A SG CYS 142 A CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf2 B SG CYS 110 B CYS 110 1_555 B SG CYS 142 B CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf3 C SG CYS 110 C CYS 110 1_555 C SG CYS 142 C CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf4 D SG CYS 110 D CYS 110 1_555 D SG CYS 142 D CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf5 E SG CYS 6 E CYS 6 1_555 E SG CYS 26 E CYS 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
covale ? covale1 E ND2 ASN 10 E ASN 10 1_555 Y C1 NAG . E NAG 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? 
#
_chem_comp.formula           'C42 H82 N O10 P' 
_chem_comp.formula_weight    792.075 
_chem_comp.id                P5S 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              O-[(R)-{[(2R)-2,3-bis(octadecanoyloxy)propyl]oxy}(hydroxy)phosphoryl]-L-serine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'phosphatidyl serine' 
#
_atom_sites.entry_id                     7U24 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 3 ATP A 1 401 401 ATP ATP . 
G 4 PTY A 1 402 506 PTY PTY . 
H 5 POV A 1 403 505 POV POV . 
I 6 P5S A 1 404 508 P5S P5S . 
J 6 P5S A 1 405 507 P5S P5S . 
K 3 ATP B 1 401 401 ATP ATP . 
L 5 POV B 1 402 505 POV POV . 
M 6 P5S B 1 403 506 P5S P5S . 
N 6 P5S B 1 404 507 P5S P5S . 
O 3 ATP C 1 401 401 ATP ATP . 
P 5 POV C 1 402 505 POV POV . 
Q 6 P5S C 1 403 506 P5S P5S . 
R 6 P5S D 1 401 507 P5S P5S . 
S 3 ATP D 1 402 401 ATP ATP . 
T 5 POV D 1 403 506 POV POV . 
U 6 P5S D 1 404 505 P5S P5S . 
V 6 P5S D 1 405 507 P5S P5S . 
W 7 GBM E 1 2001 2001 GBM GBM . 
X 3 ATP E 1 2002 2002 ATP ATP . 
Y 8 NAG E 1 2003 2101 NAG NAG . 
Z 4 PTY E 1 2004 2009 PTY PTY . 
AA 4 PTY E 1 2005 2003 PTY PTY . 
BA 4 PTY E 1 2006 2004 PTY PTY . 
CA 4 PTY E 1 2007 2008 PTY PTY . 
DA 6 P5S E 1 2008 2006 P5S P5S . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C P5S . . . DA 6 197.969 182.372 148.127 1 36.44 ? C P5S 2008 E 1 
HETATM 2 N N P5S . . . DA 6 195.99 181.873 149.631 1 36.44 ? N P5S 2008 E 1 
HETATM 3 O O P5S . . . DA 6 199.171 182.101 147.932 1 36.44 ? O P5S 2008 E 1 
HETATM 4 C C1 P5S . . . DA 6 199.828 181.871 156.42 1 36.44 ? C1 P5S 2008 E 1 
HETATM 5 C C2 P5S . . . DA 6 200.247 180.9 155.338 1 36.44 ? C2 P5S 2008 E 1 
HETATM 6 C C3 P5S . . . DA 6 199.692 181.163 153.947 1 36.44 ? C3 P5S 2008 E 1 
HETATM 7 C CA P5S . . . DA 6 197.409 182.157 149.558 1 36.44 ? CA P5S 2008 E 1 
HETATM 8 C CB P5S . . . DA 6 198.2 181.029 150.21 1 36.44 ? CB P5S 2008 E 1 
HETATM 9 O OG P5S . . . DA 6 198.598 181.361 151.525 1 36.44 ? OG P5S 2008 E 1 
HETATM 10 P P12 P5S . . . DA 6 197.583 182.053 152.604 1 36.44 ? P12 P5S 2008 E 1 
HETATM 11 O O13 P5S . . . DA 6 197.678 183.545 152.589 1 36.44 ? O13 P5S 2008 E 1 
HETATM 12 O O15 P5S . . . DA 6 196.246 181.374 152.521 1 36.44 ? O15 P5S 2008 E 1 
HETATM 13 O O16 P5S . . . DA 6 198.36 181.607 153.979 1 36.44 ? O16 P5S 2008 E 1 
HETATM 14 C C17 P5S . . . DA 6 197.905 182.581 157.613 1 36.44 ? C17 P5S 2008 E 1 
HETATM 15 O O18 P5S . . . DA 6 196.969 182.283 158.316 1 36.44 ? O18 P5S 2008 E 1 
HETATM 16 O O19 P5S . . . DA 6 198.454 181.721 156.758 1 36.44 ? O19 P5S 2008 E 1 
HETATM 17 C C20 P5S . . . DA 6 198.542 183.943 157.569 1 36.44 ? C20 P5S 2008 E 1 
HETATM 18 C C21 P5S . . . DA 6 198.71 184.601 158.93 1 36.44 ? C21 P5S 2008 E 1 
HETATM 19 C C22 P5S . . . DA 6 199.453 183.758 159.961 1 36.44 ? C22 P5S 2008 E 1 
HETATM 20 C C23 P5S . . . DA 6 198.483 183.234 161.011 1 36.44 ? C23 P5S 2008 E 1 
HETATM 21 C C24 P5S . . . DA 6 198.636 181.766 161.393 1 36.44 ? C24 P5S 2008 E 1 
HETATM 22 C C25 P5S . . . DA 6 198.34 181.561 162.874 1 36.44 ? C25 P5S 2008 E 1 
HETATM 23 C C26 P5S . . . DA 6 199.038 182.513 163.838 1 36.44 ? C26 P5S 2008 E 1 
HETATM 24 C C27 P5S . . . DA 6 198.735 182.293 165.323 1 36.44 ? C27 P5S 2008 E 1 
HETATM 25 C C28 P5S . . . DA 6 197.945 181.065 165.777 1 36.44 ? C28 P5S 2008 E 1 
HETATM 26 C C29 P5S . . . DA 6 198.691 179.736 165.676 1 36.44 ? C29 P5S 2008 E 1 
HETATM 27 C C30 P5S . . . DA 6 198.079 178.597 166.484 1 36.44 ? C30 P5S 2008 E 1 
HETATM 28 C C31 P5S . . . DA 6 197.706 178.895 167.938 1 36.44 ? C31 P5S 2008 E 1 
HETATM 29 C C32 P5S . . . DA 6 198.803 179.189 168.964 1 36.44 ? C32 P5S 2008 E 1 
HETATM 30 C C33 P5S . . . DA 6 199.463 180.566 168.933 1 36.44 ? C33 P5S 2008 E 1 
HETATM 31 C C34 P5S . . . DA 6 200.863 180.567 168.332 1 36.44 ? C34 P5S 2008 E 1 
HETATM 32 C C35 P5S . . . DA 6 201.528 181.938 168.351 1 36.44 ? C35 P5S 2008 E 1 
HETATM 33 C C36 P5S . . . DA 6 202.401 182.155 169.579 1 36.44 ? C36 P5S 2008 E 1 
HETATM 34 O O37 P5S . . . DA 6 199.941 179.574 155.793 1 36.44 ? O37 P5S 2008 E 1 
HETATM 35 C C38 P5S . . . DA 6 200.76 178.588 155.437 1 36.44 ? C38 P5S 2008 E 1 
HETATM 36 C C39 P5S . . . DA 6 200.331 177.25 155.977 1 36.44 ? C39 P5S 2008 E 1 
HETATM 37 C C40 P5S . . . DA 6 200.754 176.982 157.415 1 36.44 ? C40 P5S 2008 E 1 
HETATM 38 C C41 P5S . . . DA 6 200.05 177.852 158.448 1 36.44 ? C41 P5S 2008 E 1 
HETATM 39 C C42 P5S . . . DA 6 200.555 177.556 159.855 1 36.44 ? C42 P5S 2008 E 1 
HETATM 40 C C43 P5S . . . DA 6 200.003 176.271 160.458 1 36.44 ? C43 P5S 2008 E 1 
HETATM 41 C C44 P5S . . . DA 6 198.592 176.41 161.017 1 36.44 ? C44 P5S 2008 E 1 
HETATM 42 C C45 P5S . . . DA 6 198.447 175.84 162.423 1 36.44 ? C45 P5S 2008 E 1 
HETATM 43 C C46 P5S . . . DA 6 198.837 174.368 162.489 1 36.44 ? C46 P5S 2008 E 1 
HETATM 44 O O47 P5S . . . DA 6 201.739 178.759 154.754 1 36.44 ? O47 P5S 2008 E 1 
HETATM 45 C C48 P5S . . . DA 6 199.235 173.885 163.879 1 36.44 ? C48 P5S 2008 E 1 
HETATM 46 C C49 P5S . . . DA 6 198.671 172.509 164.215 1 36.44 ? C49 P5S 2008 E 1 
HETATM 47 C C50 P5S . . . DA 6 198.599 172.199 165.705 1 36.44 ? C50 P5S 2008 E 1 
HETATM 48 C C51 P5S . . . DA 6 198.483 173.436 166.586 1 36.44 ? C51 P5S 2008 E 1 
HETATM 49 C C52 P5S . . . DA 6 197.867 173.149 167.949 1 36.44 ? C52 P5S 2008 E 1 
HETATM 50 C C53 P5S . . . DA 6 196.395 173.538 168.027 1 36.44 ? C53 P5S 2008 E 1 
HETATM 51 C C54 P5S . . . DA 6 195.677 172.998 169.256 1 36.44 ? C54 P5S 2008 E 1 
HETATM 52 C C55 P5S . . . DA 6 196.438 173.224 170.556 1 36.44 ? C55 P5S 2008 E 1 
HETATM 53 C C56 P5S . . . DA 6 195.833 172.467 171.73 1 36.44 ? C56 P5S 2008 E 1 
HETATM 54 O OXT P5S . . . DA 6 197.159 182.803 147.281 1 36.44 ? OXT P5S 2008 E 1 
#
_model_server_stats.io_time_ms              28 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    25 
_model_server_stats.query_time_ms           290 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           54 
#