data_7U24 # _model_server_result.job_id KsBrpJXljB1osJ41j-8C3g _model_server_result.datetime_utc '2024-11-05 19:48:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7u24 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":404}' # _entry.id 7U24 # _exptl.entry_id 7U24 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 792.075 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description O-[(R)-{[(2R)-2,3-bis(octadecanoyloxy)propyl]oxy}(hydroxy)phosphoryl]-L-serine _entity.pdbx_number_of_molecules 9 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7U24 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7U24 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 I N N ? 6 J N N ? 6 M N N ? 6 N N N ? 6 Q N N ? 6 R N N ? 6 U N N ? 6 V N N ? 6 DA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 110 A CYS 110 1_555 A SG CYS 142 A CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 B SG CYS 110 B CYS 110 1_555 B SG CYS 142 B CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf3 C SG CYS 110 C CYS 110 1_555 C SG CYS 142 C CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf4 D SG CYS 110 D CYS 110 1_555 D SG CYS 142 D CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf5 E SG CYS 6 E CYS 6 1_555 E SG CYS 26 E CYS 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? covale ? covale1 E ND2 ASN 10 E ASN 10 1_555 Y C1 NAG . E NAG 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? # _chem_comp.formula 'C42 H82 N O10 P' _chem_comp.formula_weight 792.075 _chem_comp.id P5S _chem_comp.mon_nstd_flag . _chem_comp.name O-[(R)-{[(2R)-2,3-bis(octadecanoyloxy)propyl]oxy}(hydroxy)phosphoryl]-L-serine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'phosphatidyl serine' # _atom_sites.entry_id 7U24 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 3 ATP A 1 401 401 ATP ATP . G 4 PTY A 1 402 506 PTY PTY . H 5 POV A 1 403 505 POV POV . I 6 P5S A 1 404 508 P5S P5S . J 6 P5S A 1 405 507 P5S P5S . K 3 ATP B 1 401 401 ATP ATP . L 5 POV B 1 402 505 POV POV . M 6 P5S B 1 403 506 P5S P5S . N 6 P5S B 1 404 507 P5S P5S . O 3 ATP C 1 401 401 ATP ATP . P 5 POV C 1 402 505 POV POV . Q 6 P5S C 1 403 506 P5S P5S . R 6 P5S D 1 401 507 P5S P5S . S 3 ATP D 1 402 401 ATP ATP . T 5 POV D 1 403 506 POV POV . U 6 P5S D 1 404 505 P5S P5S . V 6 P5S D 1 405 507 P5S P5S . W 7 GBM E 1 2001 2001 GBM GBM . X 3 ATP E 1 2002 2002 ATP ATP . Y 8 NAG E 1 2003 2101 NAG NAG . Z 4 PTY E 1 2004 2009 PTY PTY . AA 4 PTY E 1 2005 2003 PTY PTY . BA 4 PTY E 1 2006 2004 PTY PTY . CA 4 PTY E 1 2007 2008 PTY PTY . DA 6 P5S E 1 2008 2006 P5S P5S . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C P5S . . . N 6 132.111 167.541 147.341 1 56.9 ? C P5S 404 B 1 HETATM 2 N N P5S . . . N 6 132.234 165.011 147.47 1 56.9 ? N P5S 404 B 1 HETATM 3 O O P5S . . . N 6 132.777 167.557 146.287 1 56.9 ? O P5S 404 B 1 HETATM 4 C C1 P5S . . . N 6 132.823 168.737 154.617 1 56.9 ? C1 P5S 404 B 1 HETATM 5 C C2 P5S . . . N 6 134.063 168.289 153.876 1 56.9 ? C2 P5S 404 B 1 HETATM 6 C C3 P5S . . . N 6 134.029 166.86 153.357 1 56.9 ? C3 P5S 404 B 1 HETATM 7 C CA P5S . . . N 6 131.451 166.197 147.751 1 56.9 ? CA P5S 404 B 1 HETATM 8 C CB P5S . . . N 6 131.125 166.263 149.239 1 56.9 ? CB P5S 404 B 1 HETATM 9 O OG P5S . . . N 6 132.291 166.354 150.034 1 56.9 ? OG P5S 404 B 1 HETATM 10 P P12 P5S . . . N 6 132.375 167.344 151.332 1 56.9 ? P12 P5S 404 B 1 HETATM 11 O O13 P5S . . . N 6 132.648 168.758 150.934 1 56.9 ? O13 P5S 404 B 1 HETATM 12 O O15 P5S . . . N 6 131.237 167.021 152.257 1 56.9 ? O15 P5S 404 B 1 HETATM 13 O O16 P5S . . . N 6 133.793 166.816 151.971 1 56.9 ? O16 P5S 404 B 1 HETATM 14 C C17 P5S . . . N 6 132.249 168.367 156.851 1 56.9 ? C17 P5S 404 B 1 HETATM 15 O O18 P5S . . . N 6 131.407 167.577 156.494 1 56.9 ? O18 P5S 404 B 1 HETATM 16 O O19 P5S . . . N 6 133.066 168.974 155.998 1 56.9 ? O19 P5S 404 B 1 HETATM 17 C C20 P5S . . . N 6 132.492 168.769 158.277 1 56.9 ? C20 P5S 404 B 1 HETATM 18 C C21 P5S . . . N 6 133.71 169.655 158.481 1 56.9 ? C21 P5S 404 B 1 HETATM 19 C C22 P5S . . . N 6 133.88 170.094 159.933 1 56.9 ? C22 P5S 404 B 1 HETATM 20 C C23 P5S . . . N 6 133.505 168.998 160.923 1 56.9 ? C23 P5S 404 B 1 HETATM 21 C C24 P5S . . . N 6 132.301 169.319 161.802 1 56.9 ? C24 P5S 404 B 1 HETATM 22 C C25 P5S . . . N 6 131.518 168.06 162.156 1 56.9 ? C25 P5S 404 B 1 HETATM 23 C C26 P5S . . . N 6 130.351 167.765 161.221 1 56.9 ? C26 P5S 404 B 1 HETATM 24 C C27 P5S . . . N 6 129.196 167.06 161.922 1 56.9 ? C27 P5S 404 B 1 HETATM 25 C C28 P5S . . . N 6 127.969 166.86 161.043 1 56.9 ? C28 P5S 404 B 1 HETATM 26 C C29 P5S . . . N 6 128.294 166.031 159.805 1 56.9 ? C29 P5S 404 B 1 HETATM 27 C C30 P5S . . . N 6 127.137 165.852 158.831 1 56.9 ? C30 P5S 404 B 1 HETATM 28 C C31 P5S . . . N 6 127.583 165.219 157.518 1 56.9 ? C31 P5S 404 B 1 HETATM 29 C C32 P5S . . . N 6 126.749 165.624 156.31 1 56.9 ? C32 P5S 404 B 1 HETATM 30 C C33 P5S . . . N 6 126.873 164.64 155.152 1 56.9 ? C33 P5S 404 B 1 HETATM 31 C C34 P5S . . . N 6 126.289 165.156 153.844 1 56.9 ? C34 P5S 404 B 1 HETATM 32 C C35 P5S . . . N 6 124.793 165.439 153.92 1 56.9 ? C35 P5S 404 B 1 HETATM 33 C C36 P5S . . . N 6 123.954 164.171 153.972 1 56.9 ? C36 P5S 404 B 1 HETATM 34 O O37 P5S . . . N 6 135.213 168.538 154.7 1 56.9 ? O37 P5S 404 B 1 HETATM 35 C C38 P5S . . . N 6 136.385 168.709 154.09 1 56.9 ? C38 P5S 404 B 1 HETATM 36 C C39 P5S . . . N 6 137.555 168.583 155.028 1 56.9 ? C39 P5S 404 B 1 HETATM 37 C C40 P5S . . . N 6 138.186 169.931 155.349 1 56.9 ? C40 P5S 404 B 1 HETATM 38 C C41 P5S . . . N 6 139.232 169.876 156.457 1 56.9 ? C41 P5S 404 B 1 HETATM 39 C C42 P5S . . . N 6 138.943 168.824 157.52 1 56.9 ? C42 P5S 404 B 1 HETATM 40 C C43 P5S . . . N 6 139.856 168.935 158.734 1 56.9 ? C43 P5S 404 B 1 HETATM 41 C C44 P5S . . . N 6 139.406 168.081 159.914 1 56.9 ? C44 P5S 404 B 1 HETATM 42 C C45 P5S . . . N 6 138.488 168.799 160.894 1 56.9 ? C45 P5S 404 B 1 HETATM 43 C C46 P5S . . . N 6 138.486 168.139 162.268 1 56.9 ? C46 P5S 404 B 1 HETATM 44 O O47 P5S . . . N 6 136.486 168.951 152.913 1 56.9 ? O47 P5S 404 B 1 HETATM 45 C C48 P5S . . . N 6 139.85 168.164 162.945 1 56.9 ? C48 P5S 404 B 1 HETATM 46 C C49 P5S . . . N 6 139.815 167.718 164.402 1 56.9 ? C49 P5S 404 B 1 HETATM 47 C C50 P5S . . . N 6 140.701 168.559 165.313 1 56.9 ? C50 P5S 404 B 1 HETATM 48 C C51 P5S . . . N 6 141.018 167.951 166.679 1 56.9 ? C51 P5S 404 B 1 HETATM 49 C C52 P5S . . . N 6 139.829 167.745 167.613 1 56.9 ? C52 P5S 404 B 1 HETATM 50 C C53 P5S . . . N 6 139.154 166.38 167.515 1 56.9 ? C53 P5S 404 B 1 HETATM 51 C C54 P5S . . . N 6 137.916 166.256 168.394 1 56.9 ? C54 P5S 404 B 1 HETATM 52 C C55 P5S . . . N 6 137.008 165.096 168.004 1 56.9 ? C55 P5S 404 B 1 HETATM 53 C C56 P5S . . . N 6 135.928 164.817 169.039 1 56.9 ? C56 P5S 404 B 1 HETATM 54 O OXT P5S . . . N 6 131.916 168.506 148.109 1 56.9 ? OXT P5S 404 B 1 # _model_server_stats.io_time_ms 27 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 54 #