data_7U24
#
_model_server_result.job_id            ShnEUUYqzl58km47FSQgxA 
_model_server_result.datetime_utc      '2024-11-05 19:54:31' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7u24 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"V","auth_seq_id":405}' 
#
_entry.id    7U24 
#
_exptl.entry_id    7U24 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              792.075 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            O-[(R)-{[(2R)-2,3-bis(octadecanoyloxy)propyl]oxy}(hydroxy)phosphoryl]-L-serine 
_entity.pdbx_number_of_molecules    9 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7U24 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7U24 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 I N N 
? 6 J N N 
? 6 M N N 
? 6 N N N 
? 6 Q N N 
? 6 R N N 
? 6 U N N 
? 6 V N N 
? 6 DA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 110 A CYS 110 1_555 A SG CYS 142 A CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf2 B SG CYS 110 B CYS 110 1_555 B SG CYS 142 B CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf3 C SG CYS 110 C CYS 110 1_555 C SG CYS 142 C CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf4 D SG CYS 110 D CYS 110 1_555 D SG CYS 142 D CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf5 E SG CYS 6 E CYS 6 1_555 E SG CYS 26 E CYS 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
covale ? covale1 E ND2 ASN 10 E ASN 10 1_555 Y C1 NAG . E NAG 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? 
#
_chem_comp.formula           'C42 H82 N O10 P' 
_chem_comp.formula_weight    792.075 
_chem_comp.id                P5S 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              O-[(R)-{[(2R)-2,3-bis(octadecanoyloxy)propyl]oxy}(hydroxy)phosphoryl]-L-serine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'phosphatidyl serine' 
#
_atom_sites.entry_id                     7U24 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 3 ATP A 1 401 401 ATP ATP . 
G 4 PTY A 1 402 506 PTY PTY . 
H 5 POV A 1 403 505 POV POV . 
I 6 P5S A 1 404 508 P5S P5S . 
J 6 P5S A 1 405 507 P5S P5S . 
K 3 ATP B 1 401 401 ATP ATP . 
L 5 POV B 1 402 505 POV POV . 
M 6 P5S B 1 403 506 P5S P5S . 
N 6 P5S B 1 404 507 P5S P5S . 
O 3 ATP C 1 401 401 ATP ATP . 
P 5 POV C 1 402 505 POV POV . 
Q 6 P5S C 1 403 506 P5S P5S . 
R 6 P5S D 1 401 507 P5S P5S . 
S 3 ATP D 1 402 401 ATP ATP . 
T 5 POV D 1 403 506 POV POV . 
U 6 P5S D 1 404 505 P5S P5S . 
V 6 P5S D 1 405 507 P5S P5S . 
W 7 GBM E 1 2001 2001 GBM GBM . 
X 3 ATP E 1 2002 2002 ATP ATP . 
Y 8 NAG E 1 2003 2101 NAG NAG . 
Z 4 PTY E 1 2004 2009 PTY PTY . 
AA 4 PTY E 1 2005 2003 PTY PTY . 
BA 4 PTY E 1 2006 2004 PTY PTY . 
CA 4 PTY E 1 2007 2008 PTY PTY . 
DA 6 P5S E 1 2008 2006 P5S P5S . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C P5S . . . V 6 144.764 130.205 150.765 1 48 ? C P5S 405 D 1 
HETATM 2 N N P5S . . . V 6 143.347 128.987 152.48 1 48 ? N P5S 405 D 1 
HETATM 3 O O P5S . . . V 6 145.779 129.661 151.243 1 48 ? O P5S 405 D 1 
HETATM 4 C C1 P5S . . . V 6 138.642 134.056 155.846 1 48 ? C1 P5S 405 D 1 
HETATM 5 C C2 P5S . . . V 6 139.369 134.582 154.629 1 48 ? C2 P5S 405 D 1 
HETATM 6 C C3 P5S . . . V 6 140.374 133.633 153.999 1 48 ? C3 P5S 405 D 1 
HETATM 7 C CA P5S . . . V 6 143.453 130.127 151.591 1 48 ? CA P5S 405 D 1 
HETATM 8 C CB P5S . . . V 6 143.32 131.421 152.385 1 48 ? CB P5S 405 D 1 
HETATM 9 O OG P5S . . . V 6 141.967 131.773 152.592 1 48 ? OG P5S 405 D 1 
HETATM 10 P P12 P5S . . . V 6 141.168 132.801 151.604 1 48 ? P12 P5S 405 D 1 
HETATM 11 O O13 P5S . . . V 6 141.975 134.02 151.289 1 48 ? O13 P5S 405 D 1 
HETATM 12 O O15 P5S . . . V 6 140.523 132.012 150.501 1 48 ? O15 P5S 405 D 1 
HETATM 13 O O16 P5S . . . V 6 140.035 133.325 152.67 1 48 ? O16 P5S 405 D 1 
HETATM 14 C C17 P5S . . . V 6 139.31 132.095 156.944 1 48 ? C17 P5S 405 D 1 
HETATM 15 O O18 P5S . . . V 6 138.895 131.347 156.091 1 48 ? O18 P5S 405 D 1 
HETATM 16 O O19 P5S . . . V 6 139.539 133.383 156.72 1 48 ? O19 P5S 405 D 1 
HETATM 17 C C20 P5S . . . V 6 139.624 131.696 158.357 1 48 ? C20 P5S 405 D 1 
HETATM 18 C C21 P5S . . . V 6 140.577 130.516 158.436 1 48 ? C21 P5S 405 D 1 
HETATM 19 C C22 P5S . . . V 6 141.003 130.196 159.863 1 48 ? C22 P5S 405 D 1 
HETATM 20 C C23 P5S . . . V 6 141.943 128.999 159.903 1 48 ? C23 P5S 405 D 1 
HETATM 21 C C24 P5S . . . V 6 142.626 128.757 161.243 1 48 ? C24 P5S 405 D 1 
HETATM 22 C C25 P5S . . . V 6 143.826 127.829 161.092 1 48 ? C25 P5S 405 D 1 
HETATM 23 C C26 P5S . . . V 6 144.728 128.159 159.908 1 48 ? C26 P5S 405 D 1 
HETATM 24 C C27 P5S . . . V 6 145.876 127.171 159.718 1 48 ? C27 P5S 405 D 1 
HETATM 25 C C28 P5S . . . V 6 146.891 127.038 160.85 1 48 ? C28 P5S 405 D 1 
HETATM 26 C C29 P5S . . . V 6 147.198 128.342 161.58 1 48 ? C29 P5S 405 D 1 
HETATM 27 C C30 P5S . . . V 6 148.605 128.402 162.158 1 48 ? C30 P5S 405 D 1 
HETATM 28 C C31 P5S . . . V 6 149.653 128.648 161.081 1 48 ? C31 P5S 405 D 1 
HETATM 29 C C32 P5S . . . V 6 150.937 127.851 161.268 1 48 ? C32 P5S 405 D 1 
HETATM 30 C C33 P5S . . . V 6 151.714 127.643 159.972 1 48 ? C33 P5S 405 D 1 
HETATM 31 C C34 P5S . . . V 6 150.852 127.667 158.716 1 48 ? C34 P5S 405 D 1 
HETATM 32 C C35 P5S . . . V 6 150.251 126.312 158.363 1 48 ? C35 P5S 405 D 1 
HETATM 33 C C36 P5S . . . V 6 149.16 126.41 157.307 1 48 ? C36 P5S 405 D 1 
HETATM 34 O O37 P5S . . . V 6 139.979 135.824 155.001 1 48 ? O37 P5S 405 D 1 
HETATM 35 C C38 P5S . . . V 6 139.627 136.928 154.348 1 48 ? C38 P5S 405 D 1 
HETATM 36 C C39 P5S . . . V 6 139.5 138.106 155.276 1 48 ? C39 P5S 405 D 1 
HETATM 37 C C40 P5S . . . V 6 138.243 138.067 156.132 1 48 ? C40 P5S 405 D 1 
HETATM 38 C C41 P5S . . . V 6 138.034 139.337 156.952 1 48 ? C41 P5S 405 D 1 
HETATM 39 C C42 P5S . . . V 6 138.509 139.302 158.406 1 48 ? C42 P5S 405 D 1 
HETATM 40 C C43 P5S . . . V 6 139.921 138.799 158.692 1 48 ? C43 P5S 405 D 1 
HETATM 41 C C44 P5S . . . V 6 140.002 137.306 158.997 1 48 ? C44 P5S 405 D 1 
HETATM 42 C C45 P5S . . . V 6 140.868 136.974 160.205 1 48 ? C45 P5S 405 D 1 
HETATM 43 C C46 P5S . . . V 6 140.163 137.239 161.53 1 48 ? C46 P5S 405 D 1 
HETATM 44 O O47 P5S . . . V 6 139.433 136.966 153.158 1 48 ? O47 P5S 405 D 1 
HETATM 45 C C48 P5S . . . V 6 140.689 138.465 162.264 1 48 ? C48 P5S 405 D 1 
HETATM 46 C C49 P5S . . . V 6 139.586 139.295 162.909 1 48 ? C49 P5S 405 D 1 
HETATM 47 C C50 P5S . . . V 6 140.114 140.413 163.797 1 48 ? C50 P5S 405 D 1 
HETATM 48 C C51 P5S . . . V 6 139.316 141.707 163.682 1 48 ? C51 P5S 405 D 1 
HETATM 49 C C52 P5S . . . V 6 139.481 142.645 164.873 1 48 ? C52 P5S 405 D 1 
HETATM 50 C C53 P5S . . . V 6 138.443 142.448 165.974 1 48 ? C53 P5S 405 D 1 
HETATM 51 C C54 P5S . . . V 6 138.766 141.31 166.934 1 48 ? C54 P5S 405 D 1 
HETATM 52 C C55 P5S . . . V 6 140.125 141.457 167.606 1 48 ? C55 P5S 405 D 1 
HETATM 53 C C56 P5S . . . V 6 140.503 140.248 168.45 1 48 ? C56 P5S 405 D 1 
HETATM 54 O OXT P5S . . . V 6 144.691 130.815 149.677 1 48 ? OXT P5S 405 D 1 
#
_model_server_stats.io_time_ms              37 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    51 
_model_server_stats.query_time_ms           349 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           54 
#