data_7U25 # _model_server_result.job_id oRwMUDEkwN_Pknh1dxqRLA _model_server_result.datetime_utc '2024-11-24 05:10:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7u25 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":702}' # _entry.id 7U25 # _exptl.entry_id 7U25 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 430.368 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2,6-bis[(4,6-dimethoxypyrimidin-2-yl)oxy]benzoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7U25 _cell.length_a 179.952 _cell.length_b 179.952 _cell.length_c 185.472 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7U25 _symmetry.cell_setting ? _symmetry.Int_Tables_number 181 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 64 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 12_544 x,x-y-1,-z-1/3 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 89.976 -155.843003 -61.824 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 453 A ASP 538 1_555 B MG MG . A MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? metalc ? metalc2 A OD1 ASN 480 A ASN 565 1_555 B MG MG . A MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? metalc ? metalc3 A O HIS 482 A HIS 567 1_555 B MG MG . A MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.153 ? metalc ? metalc4 B MG MG . A MG 701 1_555 E O13 TZD . A TZD 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? metalc ? metalc5 B MG MG . A MG 701 1_555 E O23 TZD . A TZD 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? # _chem_comp.formula 'C19 H18 N4 O8' _chem_comp.formula_weight 430.368 _chem_comp.id 6QL _chem_comp.mon_nstd_flag . _chem_comp.name '2,6-bis[(4,6-dimethoxypyrimidin-2-yl)oxy]benzoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C14 O13 6QL sing 1 n n O13 C12 6QL sing 2 n n C25 O24 6QL sing 3 n n O24 C23 6QL sing 4 n n C12 N15 6QL doub 5 n y C12 C11 6QL sing 6 n y N15 C06 6QL sing 7 n y O31 C02 6QL doub 8 n n C11 C08 6QL doub 9 n y C23 C26 6QL doub 10 n y C23 N22 6QL sing 11 n y C26 C27 6QL sing 12 n y C06 O05 6QL sing 13 n n C06 N07 6QL doub 14 n y C02 O01 6QL sing 15 n n C02 C03 6QL sing 16 n n O05 C04 6QL sing 17 n n N22 C21 6QL doub 18 n y C08 N07 6QL sing 19 n y C08 O09 6QL sing 20 n n C27 O28 6QL sing 21 n n C27 N30 6QL doub 22 n y O28 C29 6QL sing 23 n n C04 C03 6QL doub 24 n y C04 C16 6QL sing 25 n y C03 C19 6QL sing 26 n y C10 O09 6QL sing 27 n n C21 N30 6QL sing 28 n y C21 O20 6QL sing 29 n n C16 C17 6QL doub 30 n y C19 O20 6QL sing 31 n n C19 C18 6QL doub 32 n y C17 C18 6QL sing 33 n y O01 H1 6QL sing 34 n n C10 H2 6QL sing 35 n n C10 H3 6QL sing 36 n n C10 H4 6QL sing 37 n n C11 H5 6QL sing 38 n n C14 H6 6QL sing 39 n n C14 H7 6QL sing 40 n n C14 H8 6QL sing 41 n n C16 H9 6QL sing 42 n n C17 H10 6QL sing 43 n n C18 H11 6QL sing 44 n n C25 H12 6QL sing 45 n n C25 H13 6QL sing 46 n n C25 H14 6QL sing 47 n n C26 H15 6QL sing 48 n n C29 H16 6QL sing 49 n n C29 H17 6QL sing 50 n n C29 H18 6QL sing 51 n n # _atom_sites.entry_id 7U25 _atom_sites.fract_transf_matrix[1][1] 0.005557 _atom_sites.fract_transf_matrix[1][2] 0.003208 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006417 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005392 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 701 701 MG MG . C 3 6QL A 1 702 801 6QL 6QL . D 4 FAD A 1 703 1201 FAD FAD . E 5 TZD A 1 704 1301 TZD TZD . F 6 NHE A 1 705 1701 NHE NHE . G 7 SO4 A 1 706 1801 SO4 SO4 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O01 6QL . . . C 3 70.183 -82.94 -14.465 0.88 88.93 ? O01 6QL 702 A 1 HETATM 2 C C02 6QL . . . C 3 69.401 -81.977 -14.246 0.88 91.64 ? C02 6QL 702 A 1 HETATM 3 C C03 6QL . . . C 3 68.713 -81.281 -15.416 0.88 96.29 ? C03 6QL 702 A 1 HETATM 4 C C04 6QL . . . C 3 67.33 -81.296 -15.573 0.88 96.68 ? C04 6QL 702 A 1 HETATM 5 O O05 6QL . . . C 3 66.465 -81.92 -14.659 0.88 86.3 ? O05 6QL 702 A 1 HETATM 6 C C06 6QL . . . C 3 66.647 -83.296 -14.443 0.88 90.04 ? C06 6QL 702 A 1 HETATM 7 N N07 6QL . . . C 3 67.333 -84.061 -15.277 0.88 84.36 ? N07 6QL 702 A 1 HETATM 8 C C08 6QL . . . C 3 67.494 -85.357 -15.047 0.88 88.38 ? C08 6QL 702 A 1 HETATM 9 O O09 6QL . . . C 3 68.219 -86.162 -15.937 0.88 92.93 ? O09 6QL 702 A 1 HETATM 10 C C10 6QL . . . C 3 68.149 -87.538 -15.682 0.88 74.93 ? C10 6QL 702 A 1 HETATM 11 C C11 6QL . . . C 3 66.923 -85.907 -13.906 0.88 94.43 ? C11 6QL 702 A 1 HETATM 12 C C12 6QL . . . C 3 66.209 -85.085 -13.049 0.88 94.48 ? C12 6QL 702 A 1 HETATM 13 O O13 6QL . . . C 3 65.618 -85.589 -11.886 0.88 89.35 ? O13 6QL 702 A 1 HETATM 14 C C14 6QL . . . C 3 65.105 -84.598 -11.04 0.88 93.14 ? C14 6QL 702 A 1 HETATM 15 N N15 6QL . . . C 3 66.103 -83.805 -13.355 0.88 94.28 ? N15 6QL 702 A 1 HETATM 16 C C16 6QL . . . C 3 66.764 -80.634 -16.652 0.88 82.35 ? C16 6QL 702 A 1 HETATM 17 C C17 6QL . . . C 3 67.56 -79.984 -17.58 0.88 77.08 ? C17 6QL 702 A 1 HETATM 18 C C18 6QL . . . C 3 68.936 -79.981 -17.426 0.88 72.51 ? C18 6QL 702 A 1 HETATM 19 C C19 6QL . . . C 3 69.508 -80.628 -16.344 0.88 88.62 ? C19 6QL 702 A 1 HETATM 20 O O20 6QL . . . C 3 70.898 -80.633 -16.186 0.88 96 ? O20 6QL 702 A 1 HETATM 21 C C21 6QL . . . C 3 71.338 -79.451 -15.577 0.88 90.16 ? C21 6QL 702 A 1 HETATM 22 N N22 6QL . . . C 3 70.786 -79.049 -14.447 0.88 86.82 ? N22 6QL 702 A 1 HETATM 23 C C23 6QL . . . C 3 71.18 -77.937 -13.848 0.88 83.03 ? C23 6QL 702 A 1 HETATM 24 O O24 6QL . . . C 3 70.591 -77.518 -12.648 0.88 88.15 ? O24 6QL 702 A 1 HETATM 25 C C25 6QL . . . C 3 71.322 -76.551 -11.947 0.88 85.55 ? C25 6QL 702 A 1 HETATM 26 C C26 6QL . . . C 3 72.198 -77.201 -14.439 0.88 93.12 ? C26 6QL 702 A 1 HETATM 27 C C27 6QL . . . C 3 72.757 -77.651 -15.626 0.88 92.58 ? C27 6QL 702 A 1 HETATM 28 O O28 6QL . . . C 3 73.779 -76.928 -16.249 0.88 105.18 ? O28 6QL 702 A 1 HETATM 29 C C29 6QL . . . C 3 73.54 -76.663 -17.601 0.88 101.82 ? C29 6QL 702 A 1 HETATM 30 N N30 6QL . . . C 3 72.304 -78.77 -16.161 0.88 88.64 ? N30 6QL 702 A 1 HETATM 31 O O31 6QL . . . C 3 69.183 -81.592 -13.07 0.88 109.99 ? O31 6QL 702 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 435 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #